Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0003070

Physical Location & Seq

Genomic Coordinates Reverse (-)

64968050 .. 64973012

Gene Structure 4963 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG379800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGTGCTTTGTGGCCAACGAGGAGAAGATGAACGATGGTGTGGCTCTGGAGAAAATTAATGATGTGAAAAGACTTAGAGATTTGAGAGGTGCAATTGACACAATATTTTCTAGCAACTTAGCTGAAAGATGCTTCATCAAAGTGAGTAGCCAAAGAGGAGGCAAAGGAGGAGGTTTTGGACCTGAAAATGTGCTAGAGAGTGACCATTTGTGGACATATTGGGCTCCAAAGGATGGTGACAAAGAGGAGCATTGGATTGAATTTAGAGGCAGAGATAAAGATAAAGGATTGAGGTTCAATGTGATTAGGATTCAAGAGGCAATCGGGCTTGGCCAAAGAATCAAAAGGCATGAAATTTATGTGGATGGTAAGAGGGTTGCAAATGGAACCACTGTGGGGTACAAGAGGCTTCACAGACTTGAAGGGGAAGTAGTCTATGGCCAAATTGTCAGAATTAGAATTAAAGACTCAAAAGGGCTGCCTTTGATTTCTTCCGTTGGTCTGCATTTTGATCCCTATTGGCACCCAAGTGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004560 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006516 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009100 GO:0009987 GO:0015928 GO:0016787 GO:0016798 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901135 GO:1901136 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00511 map00511

Pfam Domains

Protein Families

Alpha_L_fucos F5_F8_type_C

Protein Analysis

178

Amino Acids

20.28

Weight (kDa)

9.22

Isoelectric Point (pI)

29.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003070)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g28480 FvH4_7g28490
malus_domestica	MD01G1188500.v1.1 MD01G1188600.v1.1
prunus_persica	Prupe.2G285300_v2.0.a1
pyrus_communis	pycom01g20020 pycom01g20030
rosa_chinensis	RchiOBHm_Chr1g0375771 RchiOBHm_Chr1g0375821 RchiOBHm_Chr1g0375841 RchiOBHm_Chr1g0375871
rosa_laevigata	RLG00000026648 RLG00000026649 RLG00000026652 RLG00000026654
rosa_multiflora	Rmu_sc0000487.1_g000052 Rmu_sc0001943.1_g000004 Rmu_sc0001943.1_g000006 Rmu_sc0001943.1_g000007
rosa_roxburghii	Rroxscaffold_4G00282570 Rroxscaffold_4G00282610 Rroxscaffold_4G00282640
rosa_rugosa	Rorug01G0391800 Rorug01G0391900 Rorug01G0392000
rosa_samantha	Rh1AG403600 Rh1AG403700 Rh1AG403800 Rh1BG367200 Rh1BG367300 Rh1CG379800 Rh1CG380000 Rh1CG380100 Rh1DG397200 Rh1DG397300
rosa_wichuraiana	Rw0G000980 Rw0G023580 Rw4G005900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	522
AccB7I	CCANNNNNTGG	1 cut(s)	233
AclWI	GGATC	1 cut(s)	506
AcoI	YGGCCR	3 cut(s)	12, 331, 439
AcsI	RAATTY	2 cut(s)	260, 354
AfaI	GTAC	1 cut(s)	401
AfiI	CCNNNNNNNGG	2 cut(s)	233, 396
AgsI	TTSAA	4 cut(s)	260, 298, 314, 422
AleI	CACNNNNGTG	1 cut(s)	528
AluBI	AGCT	1 cut(s)	122
AluI	AGCT	1 cut(s)	122
AlwI	GGATC	1 cut(s)	506
AoxI	GGCC	3 cut(s)	12, 331, 439
ApeKI	GCWGC	1 cut(s)	478
ApoI	RAATTY	2 cut(s)	260, 354
AseI	ATTAAT	1 cut(s)	57
AspS9I	GGNCC	1 cut(s)	179
AsuHPI	GGTGA	1 cut(s)	248
AvaII	GGWCC	1 cut(s)	179
BalI	TGGCCA	3 cut(s)	14, 333, 441
BanI	GGYRCC	1 cut(s)	522
BanII	GRGCYC	1 cut(s)	226
BbvI	GCAGC	1 cut(s)	465
BccI	CCATC	3 cut(s)	29, 227, 359
BfaI	CTAG	2 cut(s)	111, 194
BisI	GCNGC	1 cut(s)	479
BlsI	GCNGC	1 cut(s)	480
Bme18I	GGWCC	1 cut(s)	179
BmgT120I	GGNCC	1 cut(s)	179
BmiI	GGNNCC	3 cut(s)	225, 388, 524
BmsI	GCATC	1 cut(s)	119
BpmI	CTGGAG	1 cut(s)	68
Bsc4I	CCNNNNNNNGG	2 cut(s)	233, 396
BseGI	GGATG	2 cut(s)	238, 370
BseLI	CCNNNNNNNGG	2 cut(s)	233, 396
BseRI	GAGGAG	4 cut(s)	35, 171, 183, 260
BseXI	GCAGC	1 cut(s)	465
BshFI	GGCC	3 cut(s)	14, 333, 441
BshNI	GGYRCC	1 cut(s)	522
BslI	CCNNNNNNNGG	2 cut(s)	233, 396
BsnI	GGCC	3 cut(s)	14, 333, 441
Bsp1286I	GDGCHC	1 cut(s)	226
Bsp143I	GATC	1 cut(s)	511
BspANI	GGCC	3 cut(s)	14, 333, 441
BspLI	GGNNCC	3 cut(s)	225, 388, 524
BspPI	GGATC	1 cut(s)	506
BspT107I	GGYRCC	1 cut(s)	522
BssMI	GATC	1 cut(s)	511
Bst4CI	ACNGT	1 cut(s)	394
BstDEI	CTNAG	2 cut(s)	74, 118
BstF5I	GGATG	2 cut(s)	238, 370
BstKTI	GATC	1 cut(s)	514
BstMBI	GATC	1 cut(s)	511
BstV1I	GCAGC	1 cut(s)	465
BsuRI	GGCC	3 cut(s)	14, 333, 441
BtsCI	GGATG	2 cut(s)	238, 370
BtsIMutI	CAGTG	1 cut(s)	390
Cfr13I	GGNCC	1 cut(s)	179
Csp6I	GTAC	1 cut(s)	400
CviAII	CATG	1 cut(s)	350
CviQI	GTAC	1 cut(s)	400
DdeI	CTNAG	2 cut(s)	74, 118
DpnI	GATC	1 cut(s)	513
DpnII	GATC	1 cut(s)	511
EaeI	YGGCCR	3 cut(s)	12, 331, 439
Eco24I	GRGCYC	1 cut(s)	226
Eco47I	GGWCC	1 cut(s)	179
EcoT38I	GRGCYC	1 cut(s)	226
FaeI	CATG	1 cut(s)	353
FaiI	YATR	4 cut(s)	217, 351, 360, 438
FatI	CATG	1 cut(s)	349
Fnu4HI	GCNGC	1 cut(s)	479
FokI	GGATG	2 cut(s)	245, 377
FriOI	GRGCYC	1 cut(s)	226
Fsp4HI	GCNGC	1 cut(s)	479
FspBI	CTAG	2 cut(s)	111, 194
GluI	GCNGC	1 cut(s)	479
GsuI	CTGGAG	1 cut(s)	68
HaeIII	GGCC	3 cut(s)	14, 333, 441
Hin1II	CATG	1 cut(s)	353
HinfI	GANTC	3 cut(s)	310, 339, 467
HphI	GGTGA	1 cut(s)	248
Hpy166II	GTNNAC	1 cut(s)	213
Hpy188I	TCNGA	1 cut(s)	452
Hpy188III	TCNNGA	2 cut(s)	47, 314
Hpy8I	GTNNAC	1 cut(s)	213
HpyAV	CCTTC	1 cut(s)	416
HpyCH4III	ACNGT	1 cut(s)	394
HpyCH4V	TGCA	3 cut(s)	92, 380, 505
HpyF3I	CTNAG	2 cut(s)	74, 118
Hsp92II	CATG	1 cut(s)	353
Kzo9I	GATC	1 cut(s)	511
LmnI	GCTCC	2 cut(s)	229, 247
LpnPI	CCDG	2 cut(s)	32, 195
Lsp1109I	GCAGC	1 cut(s)	465
LweI	GCATC	1 cut(s)	119
MaeI	CTAG	2 cut(s)	111, 194
MaeIII	GTNAC	2 cut(s)	200, 236
MalI	GATC	1 cut(s)	513
MboI	GATC	1 cut(s)	511
MboII	GAAGA	2 cut(s)	37, 483
MfeI	CAATTG	1 cut(s)	93
MhlI	GDGCHC	1 cut(s)	226
MlsI	TGGCCA	3 cut(s)	14, 333, 441
MluCI	AATT	7 cut(s)	54, 93, 260, 354, 444, 453, 459
MluNI	TGGCCA	3 cut(s)	14, 333, 441
MlyI	GAGTC	1 cut(s)	461
Mox20I	TGGCCA	3 cut(s)	14, 333, 441
MscI	TGGCCA	3 cut(s)	14, 333, 441
MseI	TTAA	2 cut(s)	57, 462
MslI	CAYNNNNRTG	2 cut(s)	140, 528
Msp20I	TGGCCA	3 cut(s)	14, 333, 441
MunI	CAATTG	1 cut(s)	93
NdeII	GATC	1 cut(s)	511
NlaIII	CATG	1 cut(s)	353
NlaIV	GGNNCC	3 cut(s)	225, 388, 524
NmuCI	GTSAC	2 cut(s)	200, 236
OliI	CACNNNNGTG	1 cut(s)	528
PfeI	GAWTC	2 cut(s)	310, 339
PflMI	CCANNNNNTGG	1 cut(s)	233
PkrI	GCNGC	1 cut(s)	480
PleI	GAGTC	1 cut(s)	461
PpsI	GAGTC	1 cut(s)	461
PshBI	ATTAAT	1 cut(s)	57
PspN4I	GGNNCC	3 cut(s)	225, 388, 524
PspPI	GGNCC	1 cut(s)	179
RsaI	GTAC	1 cut(s)	401
RsaNI	GTAC	1 cut(s)	400
RseI	CAYNNNNRTG	2 cut(s)	140, 528
SaqAI	TTAA	2 cut(s)	57, 462
SatI	GCNGC	1 cut(s)	479
Sau3AI	GATC	1 cut(s)	511
Sau96I	GGNCC	1 cut(s)	179
SchI	GAGTC	1 cut(s)	461
SduI	GDGCHC	1 cut(s)	226
SetI	ASST	5 cut(s)	91, 124, 175, 184, 296
SfaNI	GCATC	1 cut(s)	119
SinI	GGWCC	1 cut(s)	179
SmiMI	CAYNNNNRTG	2 cut(s)	140, 528
Sse9I	AATT	7 cut(s)	54, 93, 260, 354, 444, 453, 459
SspI	AATATT	1 cut(s)	105
SspMI	CTAG	2 cut(s)	111, 194
TaaI	ACNGT	1 cut(s)	394
TasI	AATT	7 cut(s)	54, 93, 260, 354, 444, 453, 459
TfiI	GAWTC	2 cut(s)	310, 339
Tru1I	TTAA	2 cut(s)	57, 462
Tru9I	TTAA	2 cut(s)	57, 462
TscAI	CASTG	1 cut(s)	397
TseFI	GTSAC	2 cut(s)	200, 236
TseI	GCWGC	1 cut(s)	478
Tsp45I	GTSAC	2 cut(s)	200, 236
TspDTI	ATGAA	3 cut(s)	44, 124, 366
TspGWI	ACGGA	1 cut(s)	484
TspRI	CASTG	1 cut(s)	397
Van91I	CCANNNNNTGG	1 cut(s)	233
VpaK11BI	GGWCC	1 cut(s)	179
VspI	ATTAAT	1 cut(s)	57
XapI	RAATTY	2 cut(s)	260, 354
XspI	CTAG	2 cut(s)	111, 194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.