Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0003007

Physical Location & Seq

Genomic Coordinates Reverse (-)

25258534 .. 25260515

Gene Structure 1982 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1118300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGATATTTTGCAAAAATTTAAATCTGGCATTTACCATGTTCTTGTTGCAACTGATGTTGCTGCTCGTGGTCTTGACATCAAGTCAATTAAGTCAGTTGTCGGGGCTGGTGATAAGGATGGCACTGCGTACACTCTTATTACACAGAAAGAGGCACGTTTTGCTGGTGAGTTGGTTAATAGCTTGGTTGCTGCTGGTCAGATTGTCTCCACGGAGCTCATGGACCTTGCGATGAAGTTATTTTGGGTGCACCTTGTCTGTGGAAAGAAAGGTAGAGGGAGGGGCGGCGGTGGTCGAGGTGTGCGTGGGGTGGATTTTGGTCTGGGTATTGGATATAATACGGAGTCCAATAGTTCTTCATCGAATACTGTTCCTAGTCGATCTGTTGCAGTAACTCCTCAGAGGACAGGAATGATGTCTCAGTTCAAGACTAAATTTGTTGCCGCTTCATCTAACTCTCCAAGTCAAGGTTCAGCTAACAGCTCTAGTGTGCCCAACAGACAGGCATTACGAGGATTTGTATCCGGTGGTTCAATAGGTGGTGATGTATATAGAACTCAGGCAACCAGTACAATTACTCCTGCTCCTGCTCCAACATCAATGGTAAATAAAACTGCTACTCCGAACACTGGACAAAATTCAAGTCAGAAACCCTCCGAAAGGTTAATTAAACTGATGCTTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

229

Amino Acids

23.73

Weight (kDa)

10.18

Isoelectric Point (pI)

29.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Helicase_C	PF00271	2 - 34	3.2e-06	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003007)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47330
fragaria_vesca	FvH4_1g27100 FvH4_1g27100 FvH4_1g27100
malus_domestica	MD00G1118300.v1.1 MD00G1118400.v1.1 MD09G1283400.v1.1 MD17G1274100.v1.1 MD17G1274800.v1.1 MD17G1275300.v1.1 MD17G1276500.v1.1
prunus_persica	Prupe.3G010900_v2.0.a1 Prupe.3G010900_v2.0.a1 Prupe.3G010900_v2.0.a1 Prupe.3G010900_v2.0.a1 Prupe.3G010900_v2.0.a1
pyrus_communis	pycom09g19130 pycom09g19140 pycom17g27210 pycom17g27330
rosa_chinensis	RchiOBHm_Chr3g0487421
rosa_laevigata	RLG00000023004
rosa_multiflora	Rmu_sc0008232.1_g000009 Rmu_sc0022533.1_g000001 Rmu_sc0031316.1_g000001
rosa_roxburghii	Rroxscaffold_6G00394790
rosa_rugosa	Rorug03G0234000
rosa_samantha	Rh2AG395100 Rh2CG381700 Rh3AG282000 Rh3BG317600 Rh3CG315700 Rh3DG313600 Rh4CG235900 Rh7AG337700 Rh7AG476200 Rh7CG355800
rosa_wichuraiana	Rw3G024970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	285, 288, 444
AcsI	RAATTY	3 cut(s)	17, 434, 637
AfaI	GTAC	2 cut(s)	131, 571
AfiI	CCNNNNNNNGG	3 cut(s)	467, 629, 660
AgsI	TTSAA	3 cut(s)	427, 534, 642
AhdI	GACNNNNNGTC	1 cut(s)	82
AjuI	GAANNNNNNNTTGG	2 cut(s)	454, 486
AluBI	AGCT	4 cut(s)	183, 217, 476, 483
AluI	AGCT	4 cut(s)	183, 217, 476, 483
Alw21I	GWGCWC	2 cut(s)	219, 252
Alw26I	GTCTC	2 cut(s)	211, 423
Alw44I	GTGCAC	1 cut(s)	248
ApaLI	GTGCAC	1 cut(s)	248
ApeKI	GCWGC	2 cut(s)	62, 191
ApoI	RAATTY	3 cut(s)	17, 434, 637
ArsI	GACNNNNNNTTYG	2 cut(s)	628, 660
AspS9I	GGNCC	1 cut(s)	223
AsuHPI	GGTGA	3 cut(s)	122, 179, 554
AvaII	GGWCC	1 cut(s)	223
BaeGI	GKGCMC	2 cut(s)	252, 495
BanII	GRGCYC	1 cut(s)	219
BauI	CACGAG	1 cut(s)	66
Bbv12I	GWGCWC	2 cut(s)	219, 252
BbvI	GCAGC	2 cut(s)	49, 178
BccI	CCATC	1 cut(s)	113
BciVI	GTATCC	1 cut(s)	532
BcoDI	GTCTC	2 cut(s)	211, 423
BfaI	CTAG	2 cut(s)	375, 486
BfuI	GTATCC	1 cut(s)	532
BisI	GCNGC	4 cut(s)	63, 192, 286, 444
BlsI	GCNGC	4 cut(s)	64, 193, 287, 445
Bme18I	GGWCC	1 cut(s)	223
BmeRI	GACNNNNNGTC	1 cut(s)	82
BmgT120I	GGNCC	1 cut(s)	223
BmsI	GCATC	1 cut(s)	666
BsaBI	GATNNNNATC	1 cut(s)	520
BsaJI	CCNNGG	1 cut(s)	210
BsaWI	WCCGGW	1 cut(s)	524
BsaXI	ACNNNNNCTCC	6 cut(s)	562, 568, 592, 598, 604, 634
Bsc4I	CCNNNNNNNGG	3 cut(s)	467, 629, 660
Bse1I	ACTGG	2 cut(s)	567, 634
Bse8I	GATNNNNATC	1 cut(s)	520
BseDI	CCNNGG	1 cut(s)	210
BseGI	GGATG	1 cut(s)	124
BseJI	GATNNNNATC	1 cut(s)	520
BseLI	CCNNNNNNNGG	3 cut(s)	467, 629, 660
BseMII	CTCAG	3 cut(s)	413, 434, 572
BseNI	ACTGG	2 cut(s)	567, 634
BseRI	GAGGAG	1 cut(s)	387
BseSI	GKGCMC	2 cut(s)	252, 495
BseXI	GCAGC	2 cut(s)	49, 178
BsiHKAI	GWGCWC	2 cut(s)	219, 252
BsiSI	CCGG	1 cut(s)	525
BslI	CCNNNNNNNGG	3 cut(s)	467, 629, 660
BsmAI	GTCTC	2 cut(s)	211, 423
Bsp1286I	GDGCHC	3 cut(s)	219, 252, 495
Bsp143I	GATC	1 cut(s)	380
BspACI	CCGC	3 cut(s)	285, 288, 444
BspCNI	CTCAG	3 cut(s)	412, 433, 571
BsrI	ACTGG	2 cut(s)	567, 634
BssECI	CCNNGG	1 cut(s)	210
BssMI	GATC	1 cut(s)	380
BssSI	CACGAG	1 cut(s)	66
Bst2BI	CACGAG	1 cut(s)	66
Bst4CI	ACNGT	1 cut(s)	370
BstAPI	GCANNNNNTGC	1 cut(s)	161
BstDEI	CTNAG	3 cut(s)	399, 420, 558
BstDSI	CCRYGG	1 cut(s)	210
BstENI	CCTNNNNNAGG	1 cut(s)	658
BstF5I	GGATG	1 cut(s)	124
BstKTI	GATC	1 cut(s)	383
BstMAI	GTCTC	2 cut(s)	211, 423
BstMBI	GATC	1 cut(s)	380
BstMWI	GCNNNNNNNGC	1 cut(s)	161
BstSLI	GKGCMC	2 cut(s)	252, 495
BstV1I	GCAGC	2 cut(s)	49, 178
BsuI	GTATCC	1 cut(s)	532
BtgI	CCRYGG	1 cut(s)	210
BtgZI	GCGATG	1 cut(s)	245
BtsCI	GGATG	1 cut(s)	124
BtsI	GCAGTG	1 cut(s)	123
BtsIMutI	CAGTG	2 cut(s)	123, 627
Cfr13I	GGNCC	1 cut(s)	223
Csp6I	GTAC	2 cut(s)	130, 570
CviAII	CATG	2 cut(s)	38, 220
CviJI	RGCY	5 cut(s)	107, 183, 217, 476, 483
CviKI_1	RGCY	5 cut(s)	107, 183, 217, 476, 483
CviQI	GTAC	2 cut(s)	130, 570
DdeI	CTNAG	3 cut(s)	399, 420, 558
DpnI	GATC	1 cut(s)	382
DpnII	GATC	1 cut(s)	380
DraI	TTTAAA	1 cut(s)	22
DriI	GACNNNNNGTC	1 cut(s)	82
Eam1105I	GACNNNNNGTC	1 cut(s)	82
Ecl136II	GAGCTC	1 cut(s)	217
Eco24I	GRGCYC	1 cut(s)	219
Eco47I	GGWCC	1 cut(s)	223
Eco53kI	GAGCTC	1 cut(s)	217
EcoICRI	GAGCTC	1 cut(s)	217
EcoNI	CCTNNNNNAGG	1 cut(s)	658
EcoT38I	GRGCYC	1 cut(s)	219
FaeI	CATG	2 cut(s)	41, 223
FaiI	YATR	5 cut(s)	39, 221, 336, 550, 552
FatI	CATG	2 cut(s)	37, 219
Fnu4HI	GCNGC	4 cut(s)	63, 192, 286, 444
FokI	GGATG	1 cut(s)	131
FriOI	GRGCYC	1 cut(s)	219
Fsp4HI	GCNGC	4 cut(s)	63, 192, 286, 444
FspBI	CTAG	2 cut(s)	375, 486
GluI	GCNGC	4 cut(s)	63, 192, 286, 444
HapII	CCGG	1 cut(s)	525
Hin1II	CATG	2 cut(s)	41, 223
HinfI	GANTC	1 cut(s)	344
HpaII	CCGG	1 cut(s)	525
HphI	GGTGA	3 cut(s)	122, 179, 554
Hpy166II	GTNNAC	2 cut(s)	132, 250
Hpy188I	TCNGA	5 cut(s)	201, 402, 624, 648, 658
Hpy188III	TCNNGA	2 cut(s)	74, 427
Hpy8I	GTNNAC	2 cut(s)	132, 250
HpyCH4III	ACNGT	1 cut(s)	370
HpyCH4IV	ACGT	1 cut(s)	157
HpyCH4V	TGCA	4 cut(s)	13, 50, 250, 389
HpyF10VI	GCNNNNNNNGC	1 cut(s)	161
HpyF3I	CTNAG	3 cut(s)	399, 420, 558
HpySE526I	ACGT	1 cut(s)	157
Hsp92II	CATG	2 cut(s)	41, 223
Kzo9I	GATC	1 cut(s)	380
LmnI	GCTCC	3 cut(s)	214, 589, 595
Lsp1109I	GCAGC	2 cut(s)	49, 178
LweI	GCATC	1 cut(s)	666
MaeI	CTAG	2 cut(s)	375, 486
MaeII	ACGT	1 cut(s)	157
MaeIII	GTNAC	1 cut(s)	391
MalI	GATC	1 cut(s)	382
MboI	GATC	1 cut(s)	380
MboII	GAAGA	1 cut(s)	348
MhlI	GDGCHC	3 cut(s)	219, 252, 495
MluCI	AATT	6 cut(s)	17, 87, 434, 573, 637, 666
MlyI	GAGTC	1 cut(s)	353
MmeI	TCCRAC	1 cut(s)	617
MnlI	CCTC	8 cut(s)	145, 269, 273, 290, 396, 408, 506, 664
MseI	TTAA	5 cut(s)	21, 90, 177, 665, 669
MspI	CCGG	1 cut(s)	525
MwoI	GCNNNNNNNGC	1 cut(s)	161
NdeII	GATC	1 cut(s)	380
NlaIII	CATG	2 cut(s)	41, 223
PacI	TTAATTAA	1 cut(s)	669
PcsI	WCGNNNNNNNCGW	1 cut(s)	301
PkrI	GCNGC	4 cut(s)	64, 193, 287, 445
PleI	GAGTC	1 cut(s)	352
PpsI	GAGTC	1 cut(s)	352
Psp124BI	GAGCTC	1 cut(s)	219
PspPI	GGNCC	1 cut(s)	223
RsaI	GTAC	2 cut(s)	131, 571
RsaNI	GTAC	2 cut(s)	130, 570
SacI	GAGCTC	1 cut(s)	219
SaqAI	TTAA	5 cut(s)	21, 90, 177, 665, 669
SatI	GCNGC	4 cut(s)	63, 192, 286, 444
Sau3AI	GATC	1 cut(s)	380
Sau96I	GGNCC	1 cut(s)	223
SchI	GAGTC	1 cut(s)	353
SduI	GDGCHC	3 cut(s)	219, 252, 495
SfaNI	GCATC	1 cut(s)	666
SinI	GGWCC	1 cut(s)	223
SmiI	ATTTAAAT	1 cut(s)	22
Sse9I	AATT	6 cut(s)	17, 87, 434, 573, 637, 666
SsiI	CCGC	3 cut(s)	285, 288, 444
SspMI	CTAG	2 cut(s)	375, 486
SstI	GAGCTC	1 cut(s)	219
SwaI	ATTTAAAT	1 cut(s)	22
TaaI	ACNGT	1 cut(s)	370
TaiI	ACGT	1 cut(s)	160
TaqI	TCGA	3 cut(s)	295, 362, 379
TasI	AATT	6 cut(s)	17, 87, 434, 573, 637, 666
TatI	WGTACW	1 cut(s)	569
TauI	GCSGC	2 cut(s)	288, 446
Tru1I	TTAA	5 cut(s)	21, 90, 177, 665, 669
Tru9I	TTAA	5 cut(s)	21, 90, 177, 665, 669
TscAI	CASTG	2 cut(s)	130, 634
TseI	GCWGC	2 cut(s)	62, 191
TspDTI	ATGAA	3 cut(s)	248, 348, 438
TspGWI	ACGGA	2 cut(s)	227, 356
TspRI	CASTG	2 cut(s)	130, 634
VneI	GTGCAC	1 cut(s)	248
VpaK11BI	GGWCC	1 cut(s)	223
XagI	CCTNNNNNAGG	1 cut(s)	658
XapI	RAATTY	3 cut(s)	17, 434, 637
XcmI	CCANNNNNNNNNTGG	1 cut(s)	217
XspI	CTAG	2 cut(s)	375, 486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.