Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0003007

Physical Location & Seq

Genomic Coordinates Forward (+)

36110929 .. 36116105

Gene Structure 5177 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1283400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2346 bp

ATGTCGAAGAGAAAATTCGGATTCGAAGGCTTTGGCATAAACAAGCAATCAAGCTTCGATTTCGAGCGGTCACAGCAAGCCCCTCAGCGGCTCTACGTCCCTCCGTCGTCTCGCGGCGGAAACAGCCACGACAACTTCGAAGACACCGACCTCGACAACATCGATTACGACGACAACGATGGTTCCAATGACCCCGGGAATGACAACAGCCACGGCGACGGTGGCGGCGGTGACGAGGAAGTAGATCCTCTGGATGCTTTCATGGAGGGGATTCACGAGGAGGTGAGGTCAGCTCCGCCGCCGAAGCCGAAAGAGAAAGCCGAGAAGTACAAGGACGATGAGGAGGAGGATCACATGGAGAGTTTTCTGAGGGCTAAGAAGGACGTGATGCTCACGCTGGCATCGGATGCTTTACACGCCGGATATGACTCCGACGAGGAGGTATATGCGGCCGCCAAGGCCGTCGATGCCGGGTTGTTGGAGTACGATTCGGATGATAATCCCATTGTTCTTGACAAGAGGAAGATCGAGCCAATTCCAGCTCTCGATCATAGTTCAATCGACTACGAGCCTTTTAATAAGGATTTTTACGAGGAGAAAGAGTCGATTTCAGGGATGAGTGAGGAGGATGTTTTTGAGTACAAGAAGAGCTTGGCCATCCGTGCGTCGGGTTTTGATGTGCCAAGGCCGGTCAAGACATTTGAAGACTCTGGATTTTCTTCACAGCTGATGACTGCCATAAAAAAACAAGACTATGTAAAGCCGACACCGATACAGTGCCAAGCTCTACCCATAGTTCTTTCCGGGAGAGATATCATTGGTATTGCGAAAACTGGTTCTGGAAAGACTGCTGCTTTTGTCCTTCCAATGATTGTCCACATTATGGATCAGCCAGAACTTCAAAAAGAAGAGGGTCCTATTGGAGTGATATGTGCACCTACTCGAGAGCTGGCGCACCAAATATACTTAGAGTCCAAGAAATTTGCTAAATCACATGGGATACGTGTCTCTGCTGTATATGGTGGAATGTCTAAGCTTGATCAGTTCAAAGAACTTAAGGCAGGATGTGAAATAGTTGTTGCTACTCCCGGGAGATTAATAGACATGCTTAAAATGAAGGCACTGACAATGATAAGGGCAACTTACCTAGTACTTGATGAGGCTGATCGGATGTTTGACCTTGGGTTTGAGCCTCAAATTAGGTCTATTGTTGGTCAGATTCGACCAGACCGACAGACATTGCTCTTTTCTGCAACAATGCCTCGTAAAGTTGAAAAGTTGGCTAGGGAGATTCTCTCTGATCCTATAAGAGTTACAGTGGGTGAGGTGGGAATGGCCAATGAGGATATCACTCAGGTTGTTCATGTAATTCCCTCTGACGCTGAGAAGTTGCCCTGGCTTCTTGAGAAGTTACCTGGGATGATTGATGAGGGTGATGTTCTAGTGTTTGCTTCAAAAAAGGCTGCAGTGGATGAGATCGAGTCACAGCTTGCACAGAAAGGTTTTAAAGTCACAGCTCTGCATGGTGACAAGGACCAGGCATCTCGGATGGATATTCTGCAAAAATTTAAATCTGGCATTTACCATGTTCTTGTTGCAACTGATGTTGCTGCCCGTGGTCTTGACATCAAGTCAATTAAGTCAGTTGTGAACTTTGATATTGCAAAAGACATGGACATGCACGTCCATCGAATTGGTAGAACAGGTCGTGCTGGTGATAAGGATGGCACTGCATACACTCTTATTACACAGAAAGAGGCACGTTTTGCTGGTGAGTTGGTTAATAGCTTGGTTGCTGCTGGTCAGATTGTTTCCACGGAGCTCATGGACCTTGCGATGAAGGATGGGAGATTCAGGTCCAAACGTGATTCAAGAAAAGGAGGTGGAAAGAAAGGTAGAGGGAGGGGAGGTGGTGGCGGTGGTGGTCGAGGTGTGCGTGGGGTGGATTTTGGTCTGGGAATTGGATATAATACGGAATCCAATAATTCTTCATCGCATACCGTTGCTAGTCGACCTGCTACAGTAACTCCTGTGAGGACAGGAATGATGTCACAGTTCAAGACTAAATTCGTTGCTGCTTCATCCAACTCTCCAAGTCAAGCTTCAGGTAACAGCTATAGTGCACCCAGCAGACCAGCATTACGAGGATTTGTATCTGGTGGTTCAATTGGTGGGGATGTATATAGAACTCAGGCAACCAGTACAATTACTCCTGCTCTTACTCCCGCTCCTACTCCCGCTCCTACATCTTCTCAGAACTCTGGAGTAAATGCAAATCAGAAGCCCTCTGAAAGTTCTAGAGATAAACCTAGAGAAAGGCGGAGGCGCTCTGGTTGGGACTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

782

Amino Acids

85.12

Weight (kDa)

5.82

Isoelectric Point (pI)

44.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	256 - 426	1.3e-50	DEAD/DEAH box helicase
Helicase_C	PF00271	473 - 572	8.1e-27	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003007)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47330
fragaria_vesca	FvH4_1g27100 FvH4_1g27100 FvH4_1g27100
malus_domestica	MD00G1118300.v1.1 MD00G1118400.v1.1 MD09G1283400.v1.1 MD17G1274100.v1.1 MD17G1274800.v1.1 MD17G1275300.v1.1 MD17G1276500.v1.1
prunus_persica	Prupe.3G010900_v2.0.a1 Prupe.3G010900_v2.0.a1 Prupe.3G010900_v2.0.a1 Prupe.3G010900_v2.0.a1 Prupe.3G010900_v2.0.a1
pyrus_communis	pycom09g19130 pycom09g19140 pycom17g27210 pycom17g27330
rosa_chinensis	RchiOBHm_Chr3g0487421
rosa_laevigata	RLG00000023004
rosa_multiflora	Rmu_sc0008232.1_g000009 Rmu_sc0022533.1_g000001 Rmu_sc0031316.1_g000001
rosa_roxburghii	Rroxscaffold_6G00394790
rosa_rugosa	Rorug03G0234000
rosa_samantha	Rh2AG395100 Rh2CG381700 Rh3AG282000 Rh3BG317600 Rh3CG315700 Rh3DG313600 Rh4CG235900 Rh7AG337700 Rh7AG476200 Rh7CG355800
rosa_wichuraiana	Rw3G024970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1682
Acc36I	ACCTGC	1 cut(s)	2023
AccB7I	CCANNNNNTGG	1 cut(s)	883
AccBSI	CCGCTC	3 cut(s)	67, 2228, 2240
AccI	GTMKAC	1 cut(s)	2011
AccII	CGCG	1 cut(s)	114
AclWI	GGATC	4 cut(s)	239, 357, 894, 1295
AcoI	YGGCCR	3 cut(s)	450, 654, 1335
AcsI	RAATTY	4 cut(s)	14, 980, 1565, 2066
AcuI	CTGAAG	1 cut(s)	2088
AfaI	GTAC	5 cut(s)	329, 485, 641, 1152, 2203
AfiI	CCNNNNNNNGG	3 cut(s)	87, 667, 883
AflII	CTTAAG	1 cut(s)	1055
AflIII	ACRYGT	1 cut(s)	1003
AgsI	TTSAA	9 cut(s)	558, 704, 902, 1048, 1274, 1455, 1872, 2059, 2166
AhdI	GACNNNNNGTC	1 cut(s)	1630
AjiI	CACGTC	2 cut(s)	385, 1684
AjnI	CCWGG	3 cut(s)	1394, 1414, 1536
AjuI	GAANNNNNNNTTGG	2 cut(s)	2086, 2118
Alw21I	GWGCWC	3 cut(s)	937, 1824, 2125
Alw26I	GTCTC	2 cut(s)	114, 1012
Alw44I	GTGCAC	2 cut(s)	933, 2121
AlwI	GGATC	4 cut(s)	239, 357, 894, 1295
Ama87I	CYCGRG	3 cut(s)	194, 942, 1088
AoxI	GGCC	5 cut(s)	450, 459, 654, 686, 1335
ApaLI	GTGCAC	2 cut(s)	933, 2121
ApeKI	GCWGC	5 cut(s)	851, 1463, 1610, 1796, 2075
ApoI	RAATTY	4 cut(s)	14, 980, 1565, 2066
ArsI	GACNNNNNNTTYG	2 cut(s)	1169, 1201
AseI	ATTAAT	1 cut(s)	1097
AspLEI	GCGC	2 cut(s)	955, 2328
AspS9I	GGNCC	4 cut(s)	914, 1534, 1828, 1857
AsuC2I	CCSGG	6 cut(s)	195, 196, 472, 805, 1089, 1090
AsuHPI	GGTGA	7 cut(s)	242, 295, 1334, 1445, 1538, 1727, 1784
AsuII	TTCGAA	2 cut(s)	24, 138
AvaI	CYCGRG	3 cut(s)	194, 942, 1088
AvaII	GGWCC	4 cut(s)	914, 1534, 1828, 1857
BaeGI	GKGCMC	2 cut(s)	937, 2125
BalI	TGGCCA	2 cut(s)	656, 1337
BanII	GRGCYC	1 cut(s)	1824
BauI	CACGAG	1 cut(s)	275
BbsI	GAAGAC	2 cut(s)	147, 711
Bbv12I	GWGCWC	3 cut(s)	937, 1824, 2125
BbvCI	CCTCAGC	1 cut(s)	84
BbvI	GCAGC	5 cut(s)	838, 1450, 1597, 1783, 2062
BccI	CCATC	6 cut(s)	173, 665, 1543, 1695, 1718, 1838
BceAI	ACGGC	2 cut(s)	229, 446
BcgI	CGANNNNNNTGC	2 cut(s)	1670, 1704
BciT130I	CCWGG	3 cut(s)	1396, 1416, 1538
BciVI	GTATCC	1 cut(s)	993
BclI	TGATCA	1 cut(s)	1039
BcnI	CCSGG	6 cut(s)	195, 196, 472, 805, 1089, 1090
BcoDI	GTCTC	2 cut(s)	114, 1012
BfaI	CTAG	6 cut(s)	1148, 1284, 1442, 2007, 2298, 2310
BfmI	CTRYAG	3 cut(s)	1464, 2019, 2116
BfoI	RGCGCY	1 cut(s)	2329
BfrI	CTTAAG	1 cut(s)	1055
BfuAI	ACCTGC	1 cut(s)	2023
BfuI	GTATCC	1 cut(s)	993
BglI	GCCNNNNNGGC	1 cut(s)	458
BmcAI	AGTACT	1 cut(s)	1152
Bme1390I	CCNGG	9 cut(s)	195, 196, 472, 805, 1089, 1090, 1396, 1416, 1538
Bme18I	GGWCC	4 cut(s)	914, 1534, 1828, 1857
BmeRI	GACNNNNNGTC	1 cut(s)	1630
BmeT110I	CYCGRG	3 cut(s)	194, 942, 1088
BmgBI	CACGTC	2 cut(s)	385, 1684
BmgT120I	GGNCC	4 cut(s)	914, 1534, 1828, 1857
BmiI	GGNNCC	2 cut(s)	184, 915
BmrFI	CCNGG	9 cut(s)	195, 196, 472, 805, 1089, 1090, 1396, 1416, 1538
BmsI	GCATC	6 cut(s)	244, 378, 397, 410, 457, 1550
BpiI	GAAGAC	2 cut(s)	147, 711
BplI	GAGNNNNNCTC	4 cut(s)	277, 309, 1280, 1312
BpmI	CTGGAG	1 cut(s)	2283
Bpu10I	CCTNAGC	1 cut(s)	84
Bpu14I	TTCGAA	2 cut(s)	24, 138
BpuEI	CTTGAG	1 cut(s)	1424
BpuMI	CCSGG	6 cut(s)	195, 196, 472, 805, 1089, 1090
Bsa29I	ATCGAT	1 cut(s)	162
BsaAI	YACGTR	1 cut(s)	1004
BsaBI	GATNNNNATC	2 cut(s)	498, 2152
Bsc4I	CCNNNNNNNGG	3 cut(s)	87, 667, 883
Bse118I	RCCGGY	1 cut(s)	688
Bse1I	ACTGG	2 cut(s)	838, 2199
Bse3DI	GCAATG	1 cut(s)	1238
Bse8I	GATNNNNATC	2 cut(s)	498, 2152
BseBI	CCWGG	3 cut(s)	1396, 1416, 1538
BseCI	ATCGAT	1 cut(s)	162
BseJI	GATNNNNATC	2 cut(s)	498, 2152
BseLI	CCNNNNNNNGG	3 cut(s)	87, 667, 883
BseMI	GCAATG	1 cut(s)	1238
BseMII	CTCAG	6 cut(s)	98, 359, 1367, 1374, 2204, 2267
BseNI	ACTGG	2 cut(s)	838, 2199
BseRI	GAGGAG	6 cut(s)	293, 356, 359, 452, 608, 638
BseSI	GKGCMC	2 cut(s)	937, 2125
BseX3I	CGGCCG	1 cut(s)	450
BseXI	GCAGC	5 cut(s)	838, 1450, 1597, 1783, 2062
BseYI	CCCAGC	1 cut(s)	2126
Bsh1236I	CGCG	1 cut(s)	114
Bsh1285I	CGRYCG	1 cut(s)	453
BshFI	GGCC	5 cut(s)	452, 461, 656, 688, 1337
BshVI	ATCGAT	1 cut(s)	162
BsiEI	CGRYCG	1 cut(s)	453
BsiHKAI	GWGCWC	3 cut(s)	937, 1824, 2125
BsiHKCI	CYCGRG	3 cut(s)	194, 942, 1088
BsiSI	CCGG	6 cut(s)	195, 420, 471, 689, 804, 1089
BslFI	GGGAC	1 cut(s)	83
BslI	CCNNNNNNNGG	3 cut(s)	87, 667, 883
BsmAI	GTCTC	2 cut(s)	114, 1012
BsmBI	CGTCTC	1 cut(s)	114
BsmFI	GGGAC	1 cut(s)	83
BsnI	GGCC	5 cut(s)	452, 461, 656, 688, 1337
BsoBI	CYCGRG	3 cut(s)	194, 942, 1088
Bsp119I	TTCGAA	2 cut(s)	24, 138
Bsp1286I	GDGCHC	3 cut(s)	937, 1824, 2125
Bsp143I	GATC	9 cut(s)	244, 349, 525, 547, 886, 1039, 1165, 1300, 1476
BspANI	GGCC	5 cut(s)	452, 461, 656, 688, 1337
BspCNI	CTCAG	6 cut(s)	97, 360, 1366, 1375, 2203, 2266
BspDI	ATCGAT	1 cut(s)	162
BspFNI	CGCG	1 cut(s)	114
BspLI	GGNNCC	2 cut(s)	184, 915
BspMAI	CTGCAG	1 cut(s)	1468
BspMI	ACCTGC	1 cut(s)	2023
BspPI	GGATC	4 cut(s)	239, 357, 894, 1295
BspQI	GCTCTTC	1 cut(s)	641
BspT104I	TTCGAA	2 cut(s)	24, 138
BspTI	CTTAAG	1 cut(s)	1055
BsrBI	CCGCTC	3 cut(s)	67, 2228, 2240
BsrDI	GCAATG	1 cut(s)	1238
BsrFI	RCCGGY	1 cut(s)	688
BsrI	ACTGG	2 cut(s)	838, 2199
BssAI	RCCGGY	1 cut(s)	688
BssMI	GATC	9 cut(s)	244, 349, 525, 547, 886, 1039, 1165, 1300, 1476
BssSI	CACGAG	1 cut(s)	275
BssT1I	CCWWGG	3 cut(s)	456, 683, 1180
Bst2BI	CACGAG	1 cut(s)	275
Bst2UI	CCWGG	3 cut(s)	1396, 1416, 1538
Bst4CI	ACNGT	7 cut(s)	221, 777, 1318, 2002, 2023, 2055, 2342
Bst6I	CTCTTC	3 cut(s)	2, 641, 903
BstAFI	CTTAAG	1 cut(s)	1055
BstAPI	GCANNNNNTGC	2 cut(s)	407, 1766
BstBAI	YACGTR	1 cut(s)	1004
BstBI	TTCGAA	2 cut(s)	24, 138
BstC8I	GCNNGC	4 cut(s)	78, 399, 951, 1491
BstDEI	CTNAG	9 cut(s)	84, 368, 375, 967, 1032, 1353, 1383, 2190, 2253
BstDSI	CCRYGG	3 cut(s)	211, 1615, 1815
BstFNI	CGCG	1 cut(s)	114
BstH2I	RGCGCY	1 cut(s)	2329
BstHHI	GCGC	2 cut(s)	955, 2328
BstKTI	GATC	9 cut(s)	247, 352, 528, 550, 889, 1042, 1168, 1303, 1479
BstMAI	GTCTC	2 cut(s)	114, 1012
BstMBI	GATC	9 cut(s)	244, 349, 525, 547, 886, 1039, 1165, 1300, 1476
BstMCI	CGRYCG	1 cut(s)	453
BstNI	CCWGG	3 cut(s)	1396, 1416, 1538
BstNSI	RCATGY	2 cut(s)	1108, 1681
BstSCI	CCNGG	9 cut(s)	193, 194, 470, 803, 1087, 1088, 1394, 1414, 1536
BstSFI	CTRYAG	3 cut(s)	1464, 2019, 2116
BstSLI	GKGCMC	2 cut(s)	937, 2125
BstUI	CGCG	1 cut(s)	114
BstV1I	GCAGC	5 cut(s)	838, 1450, 1597, 1783, 2062
BstV2I	GAAGAC	2 cut(s)	147, 711
BstX2I	RGATCY	1 cut(s)	244
BstXI	CCANNNNNNTGG	1 cut(s)	1694
BstYI	RGATCY	1 cut(s)	244
BstZI	CGGCCG	1 cut(s)	450
Bsu15I	ATCGAT	1 cut(s)	162
BsuI	GTATCC	1 cut(s)	993
BsuRI	GGCC	5 cut(s)	452, 461, 656, 688, 1337
BsuTUI	ATCGAT	1 cut(s)	162
BtgI	CCRYGG	3 cut(s)	211, 1615, 1815
BtgZI	GCGATG	2 cut(s)	1850, 1977
BtrI	CACGTC	2 cut(s)	385, 1684
BtsI	GCAGTG	2 cut(s)	1473, 1728
BtsIMutI	CAGTG	5 cut(s)	782, 1121, 1323, 1473, 1728
BveI	ACCTGC	1 cut(s)	2023
Cac8I	GCNNGC	4 cut(s)	78, 399, 951, 1491
CciNI	GCGGCCGC	1 cut(s)	450
CfoI	GCGC	2 cut(s)	955, 2328
Cfr10I	RCCGGY	1 cut(s)	688
Cfr13I	GGNCC	4 cut(s)	914, 1534, 1828, 1857
Cfr9I	CCCGGG	2 cut(s)	194, 1088
ClaI	ATCGAT	1 cut(s)	162
CseI	GACGC	2 cut(s)	654, 1388
Csp6I	GTAC	5 cut(s)	328, 484, 640, 1151, 2202
CviQI	GTAC	5 cut(s)	328, 484, 640, 1151, 2202
DdeI	CTNAG	9 cut(s)	84, 368, 375, 967, 1032, 1353, 1383, 2190, 2253
DpnI	GATC	9 cut(s)	246, 351, 527, 549, 888, 1041, 1167, 1302, 1478
DpnII	GATC	9 cut(s)	244, 349, 525, 547, 886, 1039, 1165, 1300, 1476
DraI	TTTAAA	2 cut(s)	1507, 1570
DrdI	GACNNNNNNGTC	1 cut(s)	1682
DriI	GACNNNNNGTC	1 cut(s)	1630
DseDI	GACNNNNNNGTC	1 cut(s)	1682
EaeI	YGGCCR	3 cut(s)	450, 654, 1335
EagI	CGGCCG	1 cut(s)	450
Eam1104I	CTCTTC	3 cut(s)	2, 641, 903
Eam1105I	GACNNNNNGTC	1 cut(s)	1630
EarI	CTCTTC	3 cut(s)	2, 641, 903
EciI	GGCGGA	3 cut(s)	132, 285, 2335
Ecl136II	GAGCTC	1 cut(s)	1822
EclXI	CGGCCG	1 cut(s)	450
Eco130I	CCWWGG	3 cut(s)	456, 683, 1180
Eco24I	GRGCYC	1 cut(s)	1824
Eco32I	GATATC	2 cut(s)	814, 1348
Eco47I	GGWCC	4 cut(s)	914, 1534, 1828, 1857
Eco52I	CGGCCG	1 cut(s)	450
Eco53kI	GAGCTC	1 cut(s)	1822
Eco57I	CTGAAG	1 cut(s)	2088
Eco88I	CYCGRG	3 cut(s)	194, 942, 1088
EcoICRI	GAGCTC	1 cut(s)	1822
EcoO109I	RGGNCCY	1 cut(s)	914
EcoRII	CCWGG	3 cut(s)	1394, 1414, 1536
EcoRV	GATATC	2 cut(s)	814, 1348
EcoT14I	CCWWGG	3 cut(s)	456, 683, 1180
EcoT38I	GRGCYC	1 cut(s)	1824
ErhI	CCWWGG	3 cut(s)	456, 683, 1180
Esp3I	CGTCTC	1 cut(s)	114
FalI	AAGNNNNNCTT	6 cut(s)	635, 667, 1126, 1158, 2086, 2118
FaqI	GGGAC	1 cut(s)	83
FauI	CCCGC	2 cut(s)	2233, 2245
FbaI	TGATCA	1 cut(s)	1039
FblI	GTMKAC	1 cut(s)	2011
FriOI	GRGCYC	1 cut(s)	1824
FspBI	CTAG	6 cut(s)	1148, 1284, 1442, 2007, 2298, 2310
GlaI	GCGC	2 cut(s)	954, 2327
GsaI	CCCAGC	1 cut(s)	2130
GsuI	CTGGAG	1 cut(s)	2283
HaeII	RGCGCY	1 cut(s)	2329
HaeIII	GGCC	5 cut(s)	452, 461, 656, 688, 1337
HapII	CCGG	6 cut(s)	195, 420, 471, 689, 804, 1089
HgaI	GACGC	2 cut(s)	654, 1388
HhaI	GCGC	2 cut(s)	955, 2328
Hin6I	GCGC	2 cut(s)	953, 2326
HinP1I	GCGC	2 cut(s)	953, 2326
HincII	GTYRAC	1 cut(s)	2012
HindII	GTYRAC	1 cut(s)	2012
HindIII	AAGCTT	3 cut(s)	52, 1034, 2100
HpaII	CCGG	6 cut(s)	195, 420, 471, 689, 804, 1089
HphI	GGTGA	7 cut(s)	242, 295, 1334, 1445, 1538, 1727, 1784
Hpy166II	GTNNAC	5 cut(s)	877, 935, 1651, 2012, 2123
Hpy8I	GTNNAC	5 cut(s)	877, 935, 1651, 2012, 2123
Hpy99I	CGWCG	6 cut(s)	109, 173, 221, 437, 467, 670
HpyAV	CCTTC	5 cut(s)	20, 373, 872, 1111, 1834
HpyCH4III	ACNGT	7 cut(s)	221, 777, 1318, 2002, 2023, 2055, 2342
HpyCH4IV	ACGT	6 cut(s)	96, 384, 1003, 1683, 1762, 1864
HpyF3I	CTNAG	9 cut(s)	84, 368, 375, 967, 1032, 1353, 1383, 2190, 2253
HpySE526I	ACGT	6 cut(s)	96, 384, 1003, 1683, 1762, 1864
HspAI	GCGC	2 cut(s)	953, 2326
Ksp22I	TGATCA	1 cut(s)	1039
Kzo9I	GATC	9 cut(s)	244, 349, 525, 547, 886, 1039, 1165, 1300, 1476
LguI	GCTCTTC	1 cut(s)	641
LmnI	GCTCC	4 cut(s)	298, 1819, 2233, 2245
Lsp1109I	GCAGC	5 cut(s)	838, 1450, 1597, 1783, 2062
LweI	GCATC	6 cut(s)	244, 378, 397, 410, 457, 1550
MaeI	CTAG	6 cut(s)	1148, 1284, 1442, 2007, 2298, 2310
MaeII	ACGT	6 cut(s)	96, 384, 1003, 1683, 1762, 1864
MalI	GATC	9 cut(s)	246, 351, 527, 549, 888, 1041, 1167, 1302, 1478
MbiI	CCGCTC	3 cut(s)	67, 2228, 2240
MboI	GATC	9 cut(s)	244, 349, 525, 547, 886, 1039, 1165, 1300, 1476
MboII	GAAGA	9 cut(s)	19, 152, 535, 658, 711, 716, 920, 1980, 2241
MfeI	CAATTG	1 cut(s)	2166
MflI	RGATCY	1 cut(s)	244
MhlI	GDGCHC	3 cut(s)	937, 1824, 2125
MlsI	TGGCCA	2 cut(s)	656, 1337
MluNI	TGGCCA	2 cut(s)	656, 1337
MlyI	GAGTC	5 cut(s)	422, 611, 701, 980, 1490
MmeI	TCCRAC	3 cut(s)	456, 459, 2109
Mox20I	TGGCCA	2 cut(s)	656, 1337
MscI	TGGCCA	2 cut(s)	656, 1337
MseI	TTAA	8 cut(s)	576, 1056, 1097, 1110, 1506, 1569, 1638, 1782
MslI	CAYNNNNRTG	1 cut(s)	1676
Msp20I	TGGCCA	2 cut(s)	656, 1337
MspA1I	CMGCKG	2 cut(s)	88, 727
MspCI	CTTAAG	1 cut(s)	1055
MspI	CCGG	6 cut(s)	195, 420, 471, 689, 804, 1089
MspR9I	CCNGG	9 cut(s)	195, 196, 472, 805, 1089, 1090, 1396, 1416, 1538
MunI	CAATTG	1 cut(s)	2166
MvaI	CCWGG	3 cut(s)	1396, 1416, 1538
MvnI	CGCG	1 cut(s)	114
NciI	CCSGG	6 cut(s)	195, 196, 472, 805, 1089, 1090
NdeII	GATC	9 cut(s)	244, 349, 525, 547, 886, 1039, 1165, 1300, 1476
NlaIV	GGNNCC	2 cut(s)	184, 915
NmeAIII	GCCGAG	1 cut(s)	346
NmuCI	GTSAC	6 cut(s)	69, 230, 1482, 1510, 1526, 2049
NotI	GCGGCCGC	1 cut(s)	450
NspI	RCATGY	2 cut(s)	1108, 1681
NspV	TTCGAA	2 cut(s)	24, 138
PaeR7I	CTCGAG	1 cut(s)	942
PciSI	GCTCTTC	1 cut(s)	641
PcsI	WCGNNNNNNNCGW	7 cut(s)	135, 144, 159, 168, 174, 1228, 1933
PfeI	GAWTC	8 cut(s)	21, 271, 488, 1219, 1291, 1851, 1868, 1976
PflMI	CCANNNNNTGG	1 cut(s)	883
PfoI	TCCNGGA	1 cut(s)	803
PleI	GAGTC	5 cut(s)	422, 610, 701, 979, 1489
PpsI	GAGTC	5 cut(s)	422, 610, 701, 979, 1489
Ppu21I	YACGTR	1 cut(s)	1004
PpuMI	RGGWCCY	1 cut(s)	914
PshBI	ATTAAT	1 cut(s)	1097
Psp124BI	GAGCTC	1 cut(s)	1824
Psp5II	RGGWCCY	1 cut(s)	914
Psp6I	CCWGG	3 cut(s)	1394, 1414, 1536
PspFI	CCCAGC	1 cut(s)	2126
PspGI	CCWGG	3 cut(s)	1394, 1414, 1536
PspN4I	GGNNCC	2 cut(s)	184, 915
PspPI	GGNCC	4 cut(s)	914, 1534, 1828, 1857
PspPPI	RGGWCCY	1 cut(s)	914
PstI	CTGCAG	1 cut(s)	1468
PsuI	RGATCY	1 cut(s)	244
PvuII	CAGCTG	1 cut(s)	727
RsaI	GTAC	5 cut(s)	329, 485, 641, 1152, 2203
RsaNI	GTAC	5 cut(s)	328, 484, 640, 1151, 2202
RseI	CAYNNNNRTG	1 cut(s)	1676
SacI	GAGCTC	1 cut(s)	1824
SalI	GTCGAC	1 cut(s)	2010
SapI	GCTCTTC	1 cut(s)	641
SaqAI	TTAA	8 cut(s)	576, 1056, 1097, 1110, 1506, 1569, 1638, 1782
Sau3AI	GATC	9 cut(s)	244, 349, 525, 547, 886, 1039, 1165, 1300, 1476
Sau96I	GGNCC	4 cut(s)	914, 1534, 1828, 1857
ScaI	AGTACT	1 cut(s)	1152
SchI	GAGTC	5 cut(s)	422, 611, 701, 980, 1490
ScrFI	CCNGG	9 cut(s)	195, 196, 472, 805, 1089, 1090, 1396, 1416, 1538
SduI	GDGCHC	3 cut(s)	937, 1824, 2125
SfaNI	GCATC	6 cut(s)	244, 378, 397, 410, 457, 1550
SfcI	CTRYAG	3 cut(s)	1464, 2019, 2116
SfiI	GGCCNNNNNGGCC	1 cut(s)	458
Sfr274I	CTCGAG	1 cut(s)	942
SfuI	TTCGAA	2 cut(s)	24, 138
SinI	GGWCC	4 cut(s)	914, 1534, 1828, 1857
SlaI	CTCGAG	1 cut(s)	942
SmaI	CCCGGG	2 cut(s)	196, 1090
SmiI	ATTTAAAT	1 cut(s)	1570
SmiMI	CAYNNNNRTG	1 cut(s)	1676
SmlI	CTYRAG	3 cut(s)	942, 1055, 1403
SmoI	CTYRAG	3 cut(s)	942, 1055, 1403
SspMI	CTAG	6 cut(s)	1148, 1284, 1442, 2007, 2298, 2310
SstI	GAGCTC	1 cut(s)	1824
StyD4I	CCNGG	9 cut(s)	193, 194, 470, 803, 1087, 1088, 1394, 1414, 1536
StyI	CCWWGG	3 cut(s)	456, 683, 1180
SwaI	ATTTAAAT	1 cut(s)	1570
TaaI	ACNGT	7 cut(s)	221, 777, 1318, 2002, 2023, 2055, 2342
TaiI	ACGT	6 cut(s)	99, 387, 1006, 1686, 1765, 1867
TaqII	GACCGA	1 cut(s)	1245
TatI	WGTACW	4 cut(s)	327, 639, 1150, 2201
TauI	GCSGC	6 cut(s)	91, 117, 228, 301, 452, 455
TfiI	GAWTC	8 cut(s)	21, 271, 488, 1219, 1291, 1851, 1868, 1976
Tru1I	TTAA	8 cut(s)	576, 1056, 1097, 1110, 1506, 1569, 1638, 1782
Tru9I	TTAA	8 cut(s)	576, 1056, 1097, 1110, 1506, 1569, 1638, 1782
TscAI	CASTG	5 cut(s)	782, 1128, 1323, 1473, 1735
TseFI	GTSAC	6 cut(s)	69, 230, 1482, 1510, 1526, 2049
TseI	GCWGC	5 cut(s)	851, 1463, 1610, 1796, 2075
Tsp45I	GTSAC	6 cut(s)	69, 230, 1482, 1510, 1526, 2049
TspDTI	ATGAA	6 cut(s)	250, 1130, 1352, 1853, 1980, 2070
TspGWI	ACGGA	4 cut(s)	93, 650, 1832, 1988
TspMI	CCCGGG	2 cut(s)	194, 1088
TspRI	CASTG	5 cut(s)	782, 1128, 1323, 1473, 1735
Van91I	CCANNNNNTGG	1 cut(s)	883
Vha464I	CTTAAG	1 cut(s)	1055
VneI	GTGCAC	2 cut(s)	933, 2121
VpaK11BI	GGWCC	4 cut(s)	914, 1534, 1828, 1857
VspI	ATTAAT	1 cut(s)	1097
XapI	RAATTY	4 cut(s)	14, 980, 1565, 2066
XbaI	TCTAGA	1 cut(s)	2297
XceI	RCATGY	2 cut(s)	1108, 1681
XcmI	CCANNNNNNNNNTGG	2 cut(s)	218, 1822
XhoI	CTCGAG	1 cut(s)	942
XmaI	CCCGGG	2 cut(s)	194, 1088
XmiI	GTMKAC	1 cut(s)	2011
XspI	CTAG	6 cut(s)	1148, 1284, 1442, 2007, 2298, 2310
ZrmI	AGTACT	1 cut(s)	1152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.