Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008232.1

Orthogroup ID

OG0003007

Physical Location & Seq

Genomic Coordinates Forward (+)

33808 .. 36335

Gene Structure 2528 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008232.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

atggtccctgtactctcaaatgacatcacccgagtccaaaatttgaatttggctcgaaacatgacgtcagctgctgaatctgctctctctctctctcccgggttcggcataaactggcaatcgacctacaacttcgatttgtcacaacaagacccacagcggctctacgtccctccttcctcctcctcctcctcctcctcctcgcacgctaacggccacgacaattacgaagacaccgaccttgacaacattaattacaacgacattgaagccggaaacactcacggtaatggcggaggagacgtcggctgtggctgtgacgaagaagacgatgatgaggtggatcatctagagagttttttgagggccaagaaagactccacgctaactctggcctccaacgcgctccacccctggtatgattccgacgaggaggtttatgccgctgccaaggttgtggatgtcagaatgttggagtatgattccgatgacaatcccgttgttgtggacaggaggaagatcgagccaatttcagctctgaatcatacttccattgactacgagccattcaccaaggacttctacgaggagaaagaatcgatttcaggtccatggcgtagtacttgggagtaccgatggggctcatgggctagtgctaaacctagtaagccactttcatgggacaatgaggttgtccctgggactgggtgggatggagaatttgagcctccggaacccaatgggggtggagaaagcttggcttcgatacccgatggggtagaagatttgagcctccgatacctaatgggggtggagagagcttggcttcgatacccgatggggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

281

Amino Acids

31.23

Weight (kDa)

4.25

Isoelectric Point (pI)

48.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003007)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47330
fragaria_vesca	FvH4_1g27100 FvH4_1g27100 FvH4_1g27100
malus_domestica	MD00G1118300.v1.1 MD00G1118400.v1.1 MD09G1283400.v1.1 MD17G1274100.v1.1 MD17G1274800.v1.1 MD17G1275300.v1.1 MD17G1276500.v1.1
prunus_persica	Prupe.3G010900_v2.0.a1 Prupe.3G010900_v2.0.a1 Prupe.3G010900_v2.0.a1 Prupe.3G010900_v2.0.a1 Prupe.3G010900_v2.0.a1
pyrus_communis	pycom09g19130 pycom09g19140 pycom17g27210 pycom17g27330
rosa_chinensis	RchiOBHm_Chr3g0487421
rosa_laevigata	RLG00000023004
rosa_multiflora	Rmu_sc0008232.1_g000009 Rmu_sc0022533.1_g000001 Rmu_sc0031316.1_g000001
rosa_roxburghii	Rroxscaffold_6G00394790
rosa_rugosa	Rorug03G0234000
rosa_samantha	Rh2AG395100 Rh2CG381700 Rh3AG282000 Rh3BG317600 Rh3CG315700 Rh3DG313600 Rh4CG235900 Rh7AG337700 Rh7AG476200 Rh7CG355800
rosa_wichuraiana	Rw3G024970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	68, 306
AccII	CGCG	1 cut(s)	404
AccIII	TCCGGA	1 cut(s)	730
AciI	CCGC	3 cut(s)	160, 294, 444
AclWI	GGATC	1 cut(s)	351
AcoI	YGGCCR	1 cut(s)	214
AcsI	RAATTY	3 cut(s)	40, 46, 719
AcyI	GRCGYC	2 cut(s)	65, 303
AfaI	GTAC	3 cut(s)	12, 622, 632
AfiI	CCNNNNNNNGG	4 cut(s)	104, 704, 743, 808
AgsI	TTSAA	2 cut(s)	46, 269
AjnI	CCWGG	2 cut(s)	413, 697
AluBI	AGCT	4 cut(s)	71, 536, 756, 821
AluI	AGCT	4 cut(s)	71, 536, 756, 821
Alw26I	GTCTC	1 cut(s)	294
AlwI	GGATC	1 cut(s)	351
AlwNI	CAGNNNCTG	1 cut(s)	74
Ama87I	CYCGRG	2 cut(s)	30, 98
Aor13HI	TCCGGA	1 cut(s)	730
AoxI	GGCC	3 cut(s)	214, 366, 393
ApeKI	GCWGC	2 cut(s)	71, 446
ApoI	RAATTY	3 cut(s)	40, 46, 719
AseI	ATTAAT	1 cut(s)	252
AspLEI	GCGC	1 cut(s)	406
AspS9I	GGNCC	3 cut(s)	4, 366, 608
AsuC2I	CCSGG	2 cut(s)	99, 100
AsuHPI	GGTGA	2 cut(s)	19, 562
AvaI	CYCGRG	2 cut(s)	30, 98
AvaII	GGWCC	2 cut(s)	4, 608
BanII	GRGCYC	1 cut(s)	644
BbsI	GAAGAC	2 cut(s)	237, 333
BbvI	GCAGC	2 cut(s)	58, 433
BccI	CCATC	4 cut(s)	630, 707, 767, 832
BceAI	ACGGC	1 cut(s)	229
BciT130I	CCWGG	2 cut(s)	415, 699
BcnI	CCSGG	2 cut(s)	99, 100
BcoDI	GTCTC	1 cut(s)	294
BfaI	CTAG	3 cut(s)	350, 651, 663
BisI	GCNGC	4 cut(s)	72, 161, 444, 447
BlsI	GCNGC	4 cut(s)	73, 162, 445, 448
BmcAI	AGTACT	1 cut(s)	622
Bme1390I	CCNGG	4 cut(s)	99, 100, 415, 699
Bme18I	GGWCC	2 cut(s)	4, 608
BmeT110I	CYCGRG	2 cut(s)	30, 98
BmgT120I	GGNCC	3 cut(s)	4, 366, 608
BmiI	GGNNCC	2 cut(s)	6, 735
BmrFI	CCNGG	4 cut(s)	99, 100, 415, 699
BmrI	ACTGGG	1 cut(s)	714
BmuI	ACTGGG	1 cut(s)	714
BpiI	GAAGAC	2 cut(s)	237, 333
BpuMI	CCSGG	2 cut(s)	99, 100
Bsa29I	ATCGAT	1 cut(s)	599
BsaBI	GATNNNNATC	1 cut(s)	492
BsaHI	GRCGYC	2 cut(s)	65, 303
BsaJI	CCNNGG	7 cut(s)	98, 413, 450, 573, 611, 697, 698
BsaWI	WCCGGW	1 cut(s)	730
BsaXI	ACNNNNNCTCC	2 cut(s)	288, 318
Bsc4I	CCNNNNNNNGG	4 cut(s)	104, 704, 743, 808
Bse1I	ACTGG	2 cut(s)	119, 709
Bse8I	GATNNNNATC	1 cut(s)	492
BseAI	TCCGGA	1 cut(s)	730
BseBI	CCWGG	2 cut(s)	415, 699
BseCI	ATCGAT	1 cut(s)	599
BseDI	CCNNGG	7 cut(s)	98, 413, 450, 573, 611, 697, 698
BseGI	GGATG	2 cut(s)	466, 718
BseJI	GATNNNNATC	1 cut(s)	492
BseLI	CCNNNNNNNGG	4 cut(s)	104, 704, 743, 808
BseNI	ACTGG	2 cut(s)	119, 709
BseXI	GCAGC	2 cut(s)	58, 433
Bsh1236I	CGCG	1 cut(s)	404
BshFI	GGCC	3 cut(s)	216, 368, 395
BshVI	ATCGAT	1 cut(s)	599
BsiHKCI	CYCGRG	2 cut(s)	30, 98
BsiSI	CCGG	3 cut(s)	99, 273, 731
BslFI	GGGAC	4 cut(s)	155, 680, 695, 715
BslI	CCNNNNNNNGG	4 cut(s)	104, 704, 743, 808
BsmAI	GTCTC	1 cut(s)	294
BsmBI	CGTCTC	1 cut(s)	294
BsmFI	GGGAC	4 cut(s)	155, 680, 695, 715
BsnI	GGCC	3 cut(s)	216, 368, 395
BsoBI	CYCGRG	2 cut(s)	30, 98
Bsp1286I	GDGCHC	1 cut(s)	644
Bsp13I	TCCGGA	1 cut(s)	730
Bsp143I	GATC	2 cut(s)	343, 519
Bsp19I	CCATGG	1 cut(s)	611
BspACI	CCGC	3 cut(s)	160, 294, 444
BspANI	GGCC	3 cut(s)	216, 368, 395
BspDI	ATCGAT	1 cut(s)	599
BspEI	TCCGGA	1 cut(s)	730
BspFNI	CGCG	1 cut(s)	404
BspLI	GGNNCC	2 cut(s)	6, 735
BspPI	GGATC	1 cut(s)	351
BsrI	ACTGG	2 cut(s)	119, 709
BssECI	CCNNGG	7 cut(s)	98, 413, 450, 573, 611, 697, 698
BssMI	GATC	2 cut(s)	343, 519
BssNI	GRCGYC	2 cut(s)	65, 303
BssT1I	CCWWGG	3 cut(s)	450, 573, 611
Bst2UI	CCWGG	2 cut(s)	415, 699
Bst4CI	ACNGT	1 cut(s)	287
BstACI	GRCGYC	2 cut(s)	65, 303
BstC8I	GCNNGC	1 cut(s)	207
BstDSI	CCRYGG	1 cut(s)	611
BstF5I	GGATG	2 cut(s)	466, 718
BstFNI	CGCG	1 cut(s)	404
BstHHI	GCGC	1 cut(s)	406
BstKTI	GATC	2 cut(s)	346, 522
BstMAI	GTCTC	1 cut(s)	294
BstMBI	GATC	2 cut(s)	343, 519
BstMWI	GCNNNNNNNGC	2 cut(s)	80, 401
BstNI	CCWGG	2 cut(s)	415, 699
BstSCI	CCNGG	4 cut(s)	97, 98, 413, 697
BstUI	CGCG	1 cut(s)	404
BstV1I	GCAGC	2 cut(s)	58, 433
BstV2I	GAAGAC	2 cut(s)	237, 333
BstXI	CCANNNNNNTGG	2 cut(s)	457, 678
Bsu15I	ATCGAT	1 cut(s)	599
BsuRI	GGCC	3 cut(s)	216, 368, 395
BsuTUI	ATCGAT	1 cut(s)	599
BtgI	CCRYGG	1 cut(s)	611
BtsCI	GGATG	2 cut(s)	466, 718
Cac8I	GCNNGC	1 cut(s)	207
CaiI	CAGNNNCTG	1 cut(s)	74
CfoI	GCGC	1 cut(s)	406
Cfr13I	GGNCC	3 cut(s)	4, 366, 608
Cfr9I	CCCGGG	1 cut(s)	98
ClaI	ATCGAT	1 cut(s)	599
Csp6I	GTAC	3 cut(s)	11, 621, 631
CspCI	CAANNNNNGTGG	2 cut(s)	727, 762
CviAII	CATG	4 cut(s)	61, 612, 645, 678
CviQI	GTAC	3 cut(s)	11, 621, 631
DpnI	GATC	2 cut(s)	345, 521
DpnII	GATC	2 cut(s)	343, 519
EaeI	YGGCCR	1 cut(s)	214
EciI	GGCGGA	1 cut(s)	309
Eco130I	CCWWGG	3 cut(s)	450, 573, 611
Eco24I	GRGCYC	1 cut(s)	644
Eco47I	GGWCC	2 cut(s)	4, 608
Eco88I	CYCGRG	2 cut(s)	30, 98
EcoRII	CCWGG	2 cut(s)	413, 697
EcoT14I	CCWWGG	3 cut(s)	450, 573, 611
EcoT38I	GRGCYC	1 cut(s)	644
ErhI	CCWWGG	3 cut(s)	450, 573, 611
Esp3I	CGTCTC	1 cut(s)	294
FaeI	CATG	4 cut(s)	64, 615, 648, 681
FaiI	YATR	9 cut(s)	62, 110, 420, 441, 480, 546, 613, 646, 679
FalI	AAGNNNNNCTT	2 cut(s)	745, 777
FaqI	GGGAC	4 cut(s)	155, 680, 695, 715
FatI	CATG	4 cut(s)	60, 611, 644, 677
Fnu4HI	GCNGC	4 cut(s)	72, 161, 444, 447
FokI	GGATG	2 cut(s)	473, 725
FriOI	GRGCYC	1 cut(s)	644
Fsp4HI	GCNGC	4 cut(s)	72, 161, 444, 447
FspBI	CTAG	3 cut(s)	350, 651, 663
GlaI	GCGC	1 cut(s)	405
GluI	GCNGC	4 cut(s)	72, 161, 444, 447
HaeIII	GGCC	3 cut(s)	216, 368, 395
HapII	CCGG	3 cut(s)	99, 273, 731
HhaI	GCGC	1 cut(s)	406
Hin1I	GRCGYC	2 cut(s)	65, 303
Hin1II	CATG	4 cut(s)	64, 615, 648, 681
Hin6I	GCGC	1 cut(s)	404
HinP1I	GCGC	1 cut(s)	404
HindIII	AAGCTT	1 cut(s)	754
HinfI	GANTC	7 cut(s)	33, 77, 377, 422, 482, 541, 596
HpaII	CCGG	3 cut(s)	99, 273, 731
HphI	GGTGA	2 cut(s)	19, 562
Hpy166II	GTNNAC	1 cut(s)	508
Hpy188I	TCNGA	5 cut(s)	427, 467, 487, 540, 797
Hpy188III	TCNNGA	2 cut(s)	350, 731
Hpy8I	GTNNAC	1 cut(s)	508
Hpy99I	CGWCG	2 cut(s)	308, 431
HpyAV	CCTTC	1 cut(s)	186
HpyCH4III	ACNGT	1 cut(s)	287
HpyCH4IV	ACGT	3 cut(s)	65, 168, 303
HpyF10VI	GCNNNNNNNGC	2 cut(s)	80, 401
HpySE526I	ACGT	3 cut(s)	65, 168, 303
Hsp92I	GRCGYC	2 cut(s)	65, 303
Hsp92II	CATG	4 cut(s)	64, 615, 648, 681
HspAI	GCGC	1 cut(s)	404
Kpn2I	TCCGGA	1 cut(s)	730
Kzo9I	GATC	2 cut(s)	343, 519
LmnI	GCTCC	1 cut(s)	411
Lsp1109I	GCAGC	2 cut(s)	58, 433
MaeI	CTAG	3 cut(s)	350, 651, 663
MaeII	ACGT	3 cut(s)	65, 168, 303
MaeIII	GTNAC	2 cut(s)	141, 317
MalI	GATC	2 cut(s)	345, 521
MboI	GATC	2 cut(s)	343, 519
MboII	GAAGA	5 cut(s)	242, 335, 338, 529, 794
MhlI	GDGCHC	1 cut(s)	644
MluCI	AATT	6 cut(s)	40, 46, 223, 253, 528, 719
MlyI	GAGTC	2 cut(s)	42, 371
MmeI	TCCRAC	3 cut(s)	423, 450, 453
MroI	TCCGGA	1 cut(s)	730
MseI	TTAA	1 cut(s)	252
MslI	CAYNNNNRTG	2 cut(s)	288, 676
MspA1I	CMGCKG	3 cut(s)	71, 160, 446
MspI	CCGG	3 cut(s)	99, 273, 731
MspR9I	CCNGG	4 cut(s)	99, 100, 415, 699
MvaI	CCWGG	2 cut(s)	415, 699
MvnI	CGCG	1 cut(s)	404
MwoI	GCNNNNNNNGC	2 cut(s)	80, 401
NciI	CCSGG	2 cut(s)	99, 100
NcoI	CCATGG	1 cut(s)	611
NdeII	GATC	2 cut(s)	343, 519
NlaIII	CATG	4 cut(s)	64, 615, 648, 681
NlaIV	GGNNCC	2 cut(s)	6, 735
NmuCI	GTSAC	2 cut(s)	141, 317
PasI	CCCWGGG	1 cut(s)	698
PcsI	WCGNNNNNNNCGW	3 cut(s)	225, 234, 327
PfeI	GAWTC	5 cut(s)	77, 422, 482, 541, 596
PkrI	GCNGC	4 cut(s)	73, 162, 445, 448
PleI	GAGTC	2 cut(s)	41, 371
PpsI	GAGTC	2 cut(s)	41, 371
PshBI	ATTAAT	1 cut(s)	252
Psp6I	CCWGG	2 cut(s)	413, 697
PspGI	CCWGG	2 cut(s)	413, 697
PspN4I	GGNNCC	2 cut(s)	6, 735
PspPI	GGNCC	3 cut(s)	4, 366, 608
PstNI	CAGNNNCTG	1 cut(s)	74
PvuII	CAGCTG	1 cut(s)	71
RsaI	GTAC	3 cut(s)	12, 622, 632
RsaNI	GTAC	3 cut(s)	11, 621, 631
RseI	CAYNNNNRTG	2 cut(s)	288, 676
SaqAI	TTAA	1 cut(s)	252
SatI	GCNGC	4 cut(s)	72, 161, 444, 447
Sau3AI	GATC	2 cut(s)	343, 519
Sau96I	GGNCC	3 cut(s)	4, 366, 608
ScaI	AGTACT	1 cut(s)	622
SchI	GAGTC	2 cut(s)	42, 371
ScrFI	CCNGG	4 cut(s)	99, 100, 415, 699
SduI	GDGCHC	1 cut(s)	644
SinI	GGWCC	2 cut(s)	4, 608
SmaI	CCCGGG	1 cut(s)	100
SmiMI	CAYNNNNRTG	2 cut(s)	288, 676
Sse9I	AATT	6 cut(s)	40, 46, 223, 253, 528, 719
SsiI	CCGC	3 cut(s)	160, 294, 444
SspMI	CTAG	3 cut(s)	350, 651, 663
StyD4I	CCNGG	4 cut(s)	97, 98, 413, 697
StyI	CCWWGG	3 cut(s)	450, 573, 611
TaaI	ACNGT	1 cut(s)	287
TaiI	ACGT	3 cut(s)	68, 171, 306
TaqI	TCGA	7 cut(s)	55, 122, 135, 522, 599, 764, 829
TasI	AATT	6 cut(s)	40, 46, 223, 253, 528, 719
TatI	WGTACW	2 cut(s)	10, 620
TauI	GCSGC	2 cut(s)	163, 446
TfiI	GAWTC	5 cut(s)	77, 422, 482, 541, 596
Tru1I	TTAA	1 cut(s)	252
Tru9I	TTAA	1 cut(s)	252
TseFI	GTSAC	2 cut(s)	141, 317
TseI	GCWGC	2 cut(s)	71, 446
Tsp45I	GTSAC	2 cut(s)	141, 317
TspDTI	ATGAA	1 cut(s)	666
TspMI	CCCGGG	1 cut(s)	98
VpaK11BI	GGWCC	2 cut(s)	4, 608
VspI	ATTAAT	1 cut(s)	252
XapI	RAATTY	3 cut(s)	40, 46, 719
XbaI	TCTAGA	1 cut(s)	349
XcmI	CCANNNNNNNNNTGG	1 cut(s)	388
XmaI	CCCGGG	1 cut(s)	98
XspI	CTAG	3 cut(s)	350, 651, 663
ZraI	GACGTC	2 cut(s)	66, 304
ZrmI	AGTACT	1 cut(s)	622

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.