Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0003007

Physical Location & Seq

Genomic Coordinates Forward (+)

15666992 .. 15671224

Gene Structure 4233 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00394790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2361 bp

ATGTCGAAGAGGAAGTTCGGGTTCGAAGGGTTCGGCATAAACCGGCAATCGACCTACAACTTCGAGCAGGCGCAACAAGACCCACAGCGACTCTACGTCCCTCCTTCCTCCTCCTCCCGCGCTCACGGCCACGACAATTACGAAGACACCGACCTCGACAACATCGATTACGACGACATTGAAGCCGGAAACACTCACGGTAACGGCGGAGGAGGAGGCGACGCCGGAGGCGGCGGCGGTGACGAAGAAGTCGATCCTCTCGATGCTTTCATGGAGGGGATTCACCAGGAGGTGAGGTCAGCTCCGCCGCCCAAGCCCAAAGAGAAGGCTGACAAGTACCAGGACGATGACGAGGAGGATCATCTGGAGAGTTTCTTGAGGGCCAAGAAGGACGCCACGCTGACTCTGGCCTCCGACGCGCTCCACGCCGGCTATGATTCCGACGAGGAGGTCTATGCCGCTGCCAAGGCTGTGGATGCCGGAATGTTGGAGTATGATTCCGATGACAATCCCGTTGTTGTGGACAGGAGGAAGATCGAGCCAATTTCAGCTCTGGATCATACTTCCATTGACTACGAGCCATTCACCAAGGACTTCTACGACGAGAAAGAGTCGATTTCAGGGATGAGTGAGCAGGATGTTGCCGAGTACCGGAAGAGCTTGGCCATCCGAGTGTCTGGCTTTGATGTTCCAAGGCCAATTAAGACATTTGATGACTGTGCGTTTTCTCCGCAACTCGTGAATGCAATTAAAAAACAAGAGTATGAAAAGCCTACACCAATACAGTGCCAAGCTTTACCCATAGTTCTTTCTGGGAGGGATATCATTGGTATAGCAAAAACTGGCTCCGGAAAGACTGCTGCTTTTGTACTTCCCATGATTTGCCATATTATGGATCAGCCAGAACTTCAGAAAGAAGAAGGTCCTATAGGAGTCATATGTGCACCTACCAGAGAACTGGCGCAACAAATACACTTAGAGGCCAAGAAATTCGCTAAATCACATGGCATCCGTGTCTGTGCTGTATATGGGGGGATGTCGAAGCTTGATCAGTTCAAAGAACTTAAGGCAGGATGCGAGATAGTTGTAGCTACTCCTGGGAGATTGATAGACATGATTAAAATGAAGGCACTGACGATGCAACGTGTGACTTACCTAGTGCTTGATGAGGCTGATCGGATGTTTGACCTTGGTTTTGAGCCTCAAATTAGGTCTATAGTTGGTCAGATTAGGCCAGACCGGCAAACATTACTCTTTTCTGCTACAATGCCACGTAAAGTTGAAAAGTTGGCTAGGGAAATTCTCTCTGACCCTGTAAGAGTTACAGTGGGTGAGGTGGGAATGGCCAATGAGGATATCACTCAAGTTGTTCATGTACTTCCTTCTGAAGCTGAGAAATTGCCGTGGCTTCTTGAAAGATTACCTGGTATGATTGATGACGGTGATGTTCTCGTATTTGCTTCTAAAAAAGCTGCAGTGGATGAGATCGAAACACAGCTTTCTCAGAAAGGTTTTAAAGTTGCAGCTATTCATGGTGATAAGGACCAGGCTACTAGGATGGATATTATGCAAAAATATAAATCTGGCATCTACCATGTTCTGATTGCAACTGATGTTGCGGCTCGTGGTCTTAACATCAAGTCAATTAAGTCAGTTGTGAACTTTGATATTGCAAAAGACATGGACATGCATGTTCATCGTATTGGTAGAACGGGTCGTGCCGGTGATAAAGATGGGACTGCATACACTCTTATCACGCATAAAGAGGCACGGTTTGCTGGTGAATTGGTTAATAGCTTAGTTGGTGCTGGTCAGAATGTTCCCGCAGAGCTCATGGACCTTGCGATGAAGGATGGAAGATTCAGGTCGAAACGTGATTCAAGAAAAGGAGGTGGAAAGAAGGGCAGGGGGAGAGGTGGTGGTGGAGGCGGTGGCAGCAGTGGTCGAGGTGTGCGCGGGGTGGATTTTGGTCTGGGTATTGGATATAATCCGGAATCCAATAGTTCTCCATCACCCACTGTTACTAGTCGATCTGCTGCAGTTACTTCTCTAAGAACAGGAATGATGTCTCAATTCAAGAGTAAGTTTGTTTCTGCTTCATCAAACTCTCCAAGTCAGGGTTCTGGTAACAGTTCGAGTGCGCATGCCAACAAGAGGCCTGCATTACGAGGATTTGTAGCCGGTGGTTCTATTGGTGGAGACATACATAGATCTCAGACAACCAATACAGTTTCTCCAGCTCCTGCACCAGCGGCAAACATATCTTCTCAGAATTCTGGAGAAAATCTGAGCCAGAAGCCGACGGAAAGTTCTAGAGATAAACCTAGAGAAAGGCGGAGGCGCTCTGGTTGGGACTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

786

Amino Acids

85.31

Weight (kDa)

6.05

Isoelectric Point (pI)

47.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	259 - 429	5.9e-53	DEAD/DEAH box helicase
Helicase_C	PF00271	476 - 575	4.4e-26	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003007)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47330
fragaria_vesca	FvH4_1g27100 FvH4_1g27100 FvH4_1g27100
malus_domestica	MD00G1118300.v1.1 MD00G1118400.v1.1 MD09G1283400.v1.1 MD17G1274100.v1.1 MD17G1274800.v1.1 MD17G1275300.v1.1 MD17G1276500.v1.1
prunus_persica	Prupe.3G010900_v2.0.a1 Prupe.3G010900_v2.0.a1 Prupe.3G010900_v2.0.a1 Prupe.3G010900_v2.0.a1 Prupe.3G010900_v2.0.a1
pyrus_communis	pycom09g19130 pycom09g19140 pycom17g27210 pycom17g27330
rosa_chinensis	RchiOBHm_Chr3g0487421
rosa_laevigata	RLG00000023004
rosa_multiflora	Rmu_sc0008232.1_g000009 Rmu_sc0022533.1_g000001 Rmu_sc0031316.1_g000001
rosa_roxburghii	Rroxscaffold_6G00394790
rosa_rugosa	Rorug03G0234000
rosa_samantha	Rh2AG395100 Rh2CG381700 Rh3AG282000 Rh3BG317600 Rh3CG315700 Rh3DG313600 Rh4CG235900 Rh7AG337700 Rh7AG476200 Rh7CG355800
rosa_wichuraiana	Rw3G024970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	248, 449
Acc16I	TGCGCA	1 cut(s)	2142
AccB7I	CCANNNNNTGG	1 cut(s)	892
AccII	CGCG	3 cut(s)	120, 419, 1956
AccIII	TCCGGA	2 cut(s)	848, 1990
AclWI	GGATC	4 cut(s)	248, 366, 564, 903
AcoI	YGGCCR	3 cut(s)	127, 663, 1344
AcsI	RAATTY	3 cut(s)	989, 1299, 2272
AcuI	CTGAAG	2 cut(s)	893, 1407
AcyI	GRCGYC	2 cut(s)	222, 393
AfaI	GTAC	4 cut(s)	338, 650, 870, 1377
AfiI	CCNNNNNNNGG	4 cut(s)	651, 892, 2117, 2154
AflII	CTTAAG	1 cut(s)	1064
AflIII	ACRYGT	1 cut(s)	1144
AgsI	TTSAA	6 cut(s)	182, 1057, 1283, 1415, 1881, 2077
AhdI	GACNNNNNGTC	1 cut(s)	95
AhlI	ACTAGT	1 cut(s)	2024
AjnI	CCWGG	5 cut(s)	285, 339, 1096, 1423, 1545
AjuI	GAANNNNNNNTTGG	2 cut(s)	2104, 2136
Alw21I	GWGCWC	2 cut(s)	946, 1833
Alw26I	GTCTC	2 cut(s)	2073, 2193
Alw44I	GTGCAC	1 cut(s)	942
AlwI	GGATC	4 cut(s)	248, 366, 564, 903
AlwNI	CAGNNNCTG	1 cut(s)	2243
Aor13HI	TCCGGA	2 cut(s)	848, 1990
AoxI	GGCC	9 cut(s)	127, 381, 408, 663, 695, 981, 1232, 1344, 2156
ApaLI	GTGCAC	1 cut(s)	942
ApeKI	GCWGC	6 cut(s)	461, 860, 1472, 1523, 1935, 2036
ApoI	RAATTY	3 cut(s)	989, 1299, 2272
ArsI	GACNNNNNNTTYG	2 cut(s)	1178, 1210
AspLEI	GCGC	7 cut(s)	73, 122, 421, 964, 1956, 2143, 2343
AspS9I	GGNCC	4 cut(s)	381, 923, 1543, 1837
AsuII	TTCGAA	1 cut(s)	24
AvaII	GGWCC	3 cut(s)	923, 1543, 1837
BaeGI	GKGCMC	1 cut(s)	946
BalI	TGGCCA	2 cut(s)	665, 1346
BanII	GRGCYC	1 cut(s)	1833
BauI	CACGAG	2 cut(s)	737, 1623
BbsI	GAAGAC	1 cut(s)	150
Bbv12I	GWGCWC	2 cut(s)	946, 1833
BbvI	GCAGC	6 cut(s)	448, 847, 1459, 1535, 1947, 2023
BccI	CCATC	5 cut(s)	674, 1552, 1727, 1847, 2017
BceAI	ACGGC	3 cut(s)	142, 220, 1387
BcgI	CGANNNNNNTGC	2 cut(s)	1679, 1713
BciT130I	CCWGG	5 cut(s)	287, 341, 1098, 1425, 1547
BclI	TGATCA	1 cut(s)	1048
BcoDI	GTCTC	2 cut(s)	2073, 2193
BcuI	ACTAGT	1 cut(s)	2024
BfaI	CTAG	6 cut(s)	1157, 1293, 1554, 2025, 2313, 2325
BfmI	CTRYAG	4 cut(s)	927, 1215, 1473, 2037
BfoI	RGCGCY	1 cut(s)	2344
BfrI	CTTAAG	1 cut(s)	1064
BglI	GCCNNNNNGGC	1 cut(s)	1240
BglII	AGATCT	1 cut(s)	2210
Bme1390I	CCNGG	5 cut(s)	287, 341, 1098, 1425, 1547
Bme18I	GGWCC	3 cut(s)	923, 1543, 1837
BmeRI	GACNNNNNGTC	1 cut(s)	95
BmgT120I	GGNCC	4 cut(s)	381, 923, 1543, 1837
BmiI	GGNNCC	1 cut(s)	847
BmrFI	CCNGG	5 cut(s)	287, 341, 1098, 1425, 1547
BmsI	GCATC	6 cut(s)	253, 466, 1017, 1064, 1128, 1596
BpiI	GAAGAC	1 cut(s)	150
BplI	GAGNNNNNCTC	2 cut(s)	286, 318
BpmI	CTGGAG	3 cut(s)	386, 2220, 2298
Bpu14I	TTCGAA	1 cut(s)	24
BpuEI	CTTGAG	2 cut(s)	397, 1347
Bsa29I	ATCGAT	1 cut(s)	165
BsaAI	YACGTR	1 cut(s)	1274
BsaBI	GATNNNNATC	1 cut(s)	507
BsaHI	GRCGYC	2 cut(s)	222, 393
BsaJI	CCNNGG	6 cut(s)	465, 588, 692, 1097, 1189, 1403
BsaWI	WCCGGW	3 cut(s)	651, 848, 1990
BsaXI	ACNNNNNCTCC	6 cut(s)	281, 311, 1903, 1933, 2218, 2248
Bsc4I	CCNNNNNNNGG	4 cut(s)	651, 892, 2117, 2154
Bse118I	RCCGGY	5 cut(s)	42, 428, 1239, 1721, 2180
Bse1I	ACTGG	2 cut(s)	847, 963
Bse8I	GATNNNNATC	1 cut(s)	507
BseAI	TCCGGA	2 cut(s)	848, 1990
BseBI	CCWGG	5 cut(s)	287, 341, 1098, 1425, 1547
BseCI	ATCGAT	1 cut(s)	165
BseDI	CCNNGG	6 cut(s)	465, 588, 692, 1097, 1189, 1403
BseJI	GATNNNNATC	1 cut(s)	507
BseLI	CCNNNNNNNGG	4 cut(s)	651, 892, 2117, 2154
BseMII	CTCAG	5 cut(s)	1383, 1517, 2228, 2279, 2282
BseNI	ACTGG	2 cut(s)	847, 963
BseRI	GAGGAG	6 cut(s)	100, 103, 225, 228, 368, 461
BseSI	GKGCMC	1 cut(s)	946
BseXI	GCAGC	6 cut(s)	448, 847, 1459, 1535, 1947, 2023
BsgI	GTGCAG	1 cut(s)	2229
Bsh1236I	CGCG	3 cut(s)	120, 419, 1956
BshFI	GGCC	9 cut(s)	129, 383, 410, 665, 697, 983, 1234, 1346, 2158
BshVI	ATCGAT	1 cut(s)	165
BsiHKAI	GWGCWC	2 cut(s)	946, 1833
BslFI	GGGAC	2 cut(s)	83, 1750
BslI	CCNNNNNNNGG	4 cut(s)	651, 892, 2117, 2154
BsmAI	GTCTC	2 cut(s)	2073, 2193
BsmFI	GGGAC	2 cut(s)	83, 1750
BsmI	GAATGC	1 cut(s)	748
BsnI	GGCC	9 cut(s)	129, 383, 410, 665, 697, 983, 1234, 1346, 2158
Bsp119I	TTCGAA	1 cut(s)	24
Bsp1286I	GDGCHC	2 cut(s)	946, 1833
Bsp13I	TCCGGA	2 cut(s)	848, 1990
BspANI	GGCC	9 cut(s)	129, 383, 410, 665, 697, 983, 1234, 1346, 2158
BspCNI	CTCAG	5 cut(s)	1384, 1516, 2227, 2280, 2281
BspDI	ATCGAT	1 cut(s)	165
BspEI	TCCGGA	2 cut(s)	848, 1990
BspFNI	CGCG	3 cut(s)	120, 419, 1956
BspLI	GGNNCC	1 cut(s)	847
BspMAI	CTGCAG	2 cut(s)	1477, 2041
BspPI	GGATC	4 cut(s)	248, 366, 564, 903
BspQI	GCTCTTC	1 cut(s)	650
BspT104I	TTCGAA	1 cut(s)	24
BspTI	CTTAAG	1 cut(s)	1064
BsrFI	RCCGGY	5 cut(s)	42, 428, 1239, 1721, 2180
BsrI	ACTGG	2 cut(s)	847, 963
BssAI	RCCGGY	5 cut(s)	42, 428, 1239, 1721, 2180
BssECI	CCNNGG	6 cut(s)	465, 588, 692, 1097, 1189, 1403
BssNI	GRCGYC	2 cut(s)	222, 393
BssSI	CACGAG	2 cut(s)	737, 1623
BssT1I	CCWWGG	4 cut(s)	465, 588, 692, 1189
Bst2BI	CACGAG	2 cut(s)	737, 1623
Bst2UI	CCWGG	5 cut(s)	287, 341, 1098, 1425, 1547
Bst6I	CTCTTC	2 cut(s)	2, 650
BstACI	GRCGYC	2 cut(s)	222, 393
BstAFI	CTTAAG	1 cut(s)	1064
BstAPI	GCANNNNNTGC	1 cut(s)	1775
BstBAI	YACGTR	1 cut(s)	1274
BstBI	TTCGAA	1 cut(s)	24
BstC8I	GCNNGC	4 cut(s)	69, 430, 2145, 2160
BstDEI	CTNAG	8 cut(s)	976, 1392, 1503, 1798, 2051, 2214, 2268, 2288
BstDSI	CCRYGG	1 cut(s)	1403
BstFNI	CGCG	3 cut(s)	120, 419, 1956
BstH2I	RGCGCY	1 cut(s)	2344
BstHHI	GCGC	7 cut(s)	73, 122, 421, 964, 1956, 2143, 2343
BstMAI	GTCTC	2 cut(s)	2073, 2193
BstNI	CCWGG	5 cut(s)	287, 341, 1098, 1425, 1547
BstNSI	RCATGY	3 cut(s)	1690, 1694, 2147
BstSCI	CCNGG	5 cut(s)	285, 339, 1096, 1423, 1545
BstSFI	CTRYAG	4 cut(s)	927, 1215, 1473, 2037
BstSLI	GKGCMC	1 cut(s)	946
BstUI	CGCG	3 cut(s)	120, 419, 1956
BstV1I	GCAGC	6 cut(s)	448, 847, 1459, 1535, 1947, 2023
BstV2I	GAAGAC	1 cut(s)	150
BstX2I	RGATCY	1 cut(s)	2210
BstXI	CCANNNNNNTGG	2 cut(s)	472, 958
BstYI	RGATCY	1 cut(s)	2210
Bsu15I	ATCGAT	1 cut(s)	165
BsuRI	GGCC	9 cut(s)	129, 383, 410, 665, 697, 983, 1234, 1346, 2158
BsuTUI	ATCGAT	1 cut(s)	165
BtgI	CCRYGG	1 cut(s)	1403
BtgZI	GCGATG	1 cut(s)	1859
BtsI	GCAGTG	2 cut(s)	1482, 1945
BtsIMutI	CAGTG	6 cut(s)	791, 1130, 1332, 1482, 1945, 2016
Cac8I	GCNNGC	4 cut(s)	69, 430, 2145, 2160
CaiI	CAGNNNCTG	1 cut(s)	2243
CfoI	GCGC	7 cut(s)	73, 122, 421, 964, 1956, 2143, 2343
Cfr10I	RCCGGY	5 cut(s)	42, 428, 1239, 1721, 2180
Cfr13I	GGNCC	4 cut(s)	381, 923, 1543, 1837
ClaI	ATCGAT	1 cut(s)	165
CseI	GACGC	3 cut(s)	230, 401, 425
CsiI	ACCWGGT	1 cut(s)	1423
Csp6I	GTAC	4 cut(s)	337, 649, 869, 1376
CviQI	GTAC	4 cut(s)	337, 649, 869, 1376
DdeI	CTNAG	8 cut(s)	976, 1392, 1503, 1798, 2051, 2214, 2268, 2288
DraI	TTTAAA	1 cut(s)	1516
DrdI	GACNNNNNNGTC	2 cut(s)	248, 449
DriI	GACNNNNNGTC	1 cut(s)	95
DseDI	GACNNNNNNGTC	2 cut(s)	248, 449
EaeI	YGGCCR	3 cut(s)	127, 663, 1344
Eam1104I	CTCTTC	2 cut(s)	2, 650
Eam1105I	GACNNNNNGTC	1 cut(s)	95
EarI	CTCTTC	2 cut(s)	2, 650
EciI	GGCGGA	3 cut(s)	222, 294, 2350
Ecl136II	GAGCTC	1 cut(s)	1831
Eco130I	CCWWGG	4 cut(s)	465, 588, 692, 1189
Eco147I	AGGCCT	1 cut(s)	2158
Eco24I	GRGCYC	1 cut(s)	1833
Eco32I	GATATC	2 cut(s)	823, 1357
Eco47I	GGWCC	3 cut(s)	923, 1543, 1837
Eco53kI	GAGCTC	1 cut(s)	1831
Eco57I	CTGAAG	2 cut(s)	893, 1407
EcoICRI	GAGCTC	1 cut(s)	1831
EcoO109I	RGGNCCY	1 cut(s)	923
EcoRI	GAATTC	1 cut(s)	2272
EcoRII	CCWGG	5 cut(s)	285, 339, 1096, 1423, 1545
EcoRV	GATATC	2 cut(s)	823, 1357
EcoT14I	CCWWGG	4 cut(s)	465, 588, 692, 1189
EcoT22I	ATGCAT	1 cut(s)	1692
EcoT38I	GRGCYC	1 cut(s)	1833
ErhI	CCWWGG	4 cut(s)	465, 588, 692, 1189
FaqI	GGGAC	2 cut(s)	83, 1750
FauI	CCCGC	3 cut(s)	125, 1831, 1949
FauNDI	CATATG	1 cut(s)	938
FbaI	TGATCA	1 cut(s)	1048
FriOI	GRGCYC	1 cut(s)	1833
FspAI	RTGCGCAY	1 cut(s)	2142
FspBI	CTAG	6 cut(s)	1157, 1293, 1554, 2025, 2313, 2325
FspI	TGCGCA	1 cut(s)	2142
GlaI	GCGC	7 cut(s)	72, 121, 420, 963, 1955, 2142, 2342
GsuI	CTGGAG	3 cut(s)	386, 2220, 2298
HaeII	RGCGCY	1 cut(s)	2344
HaeIII	GGCC	9 cut(s)	129, 383, 410, 665, 697, 983, 1234, 1346, 2158
HgaI	GACGC	3 cut(s)	230, 401, 425
HhaI	GCGC	7 cut(s)	73, 122, 421, 964, 1956, 2143, 2343
Hin1I	GRCGYC	2 cut(s)	222, 393
Hin6I	GCGC	7 cut(s)	71, 120, 419, 962, 1954, 2141, 2341
HinP1I	GCGC	7 cut(s)	71, 120, 419, 962, 1954, 2141, 2341
HindIII	AAGCTT	2 cut(s)	792, 1043
Hpy166II	GTNNAC	3 cut(s)	523, 944, 1660
Hpy8I	GTNNAC	3 cut(s)	523, 944, 1660
Hpy99I	CGWCG	6 cut(s)	176, 224, 419, 446, 605, 2305
HpyAV	CCTTC	9 cut(s)	20, 114, 319, 382, 914, 1120, 1392, 1843, 1894
HpyCH4IV	ACGT	4 cut(s)	96, 1144, 1273, 1873
HpyF3I	CTNAG	8 cut(s)	976, 1392, 1503, 1798, 2051, 2214, 2268, 2288
HpySE526I	ACGT	4 cut(s)	96, 1144, 1273, 1873
Hsp92I	GRCGYC	2 cut(s)	222, 393
HspAI	GCGC	7 cut(s)	71, 120, 419, 962, 1954, 2141, 2341
Kpn2I	TCCGGA	2 cut(s)	848, 1990
KroI	GCCGGC	1 cut(s)	428
KroNI	GCCGGC	1 cut(s)	430
Ksp22I	TGATCA	1 cut(s)	1048
LguI	GCTCTTC	1 cut(s)	650
LmnI	GCTCC	4 cut(s)	307, 426, 851, 2245
Lsp1109I	GCAGC	6 cut(s)	448, 847, 1459, 1535, 1947, 2023
LweI	GCATC	6 cut(s)	253, 466, 1017, 1064, 1128, 1596
MabI	ACCWGGT	1 cut(s)	1423
MaeI	CTAG	6 cut(s)	1157, 1293, 1554, 2025, 2313, 2325
MaeII	ACGT	4 cut(s)	96, 1144, 1273, 1873
MaeIII	GTNAC	7 cut(s)	200, 239, 1147, 1321, 2020, 2041, 2126
MboII	GAAGA	8 cut(s)	19, 155, 257, 544, 667, 929, 1869, 2256
MflI	RGATCY	1 cut(s)	2210
MhlI	GDGCHC	2 cut(s)	946, 1833
MlsI	TGGCCA	2 cut(s)	665, 1346
MluNI	TGGCCA	2 cut(s)	665, 1346
MlyI	GAGTC	4 cut(s)	84, 397, 620, 942
MmeI	TCCRAC	3 cut(s)	438, 465, 468
Mox20I	TGGCCA	2 cut(s)	665, 1346
Mph1103I	ATGCAT	1 cut(s)	1692
MroI	TCCGGA	2 cut(s)	848, 1990
MroNI	GCCGGC	1 cut(s)	428
MscI	TGGCCA	2 cut(s)	665, 1346
MseI	TTAA	8 cut(s)	702, 750, 1065, 1119, 1515, 1632, 1647, 1791
MslI	CAYNNNNRTG	2 cut(s)	671, 1685
Msp20I	TGGCCA	2 cut(s)	665, 1346
MspA1I	CMGCKG	2 cut(s)	461, 2252
MspCI	CTTAAG	1 cut(s)	1064
MspR9I	CCNGG	5 cut(s)	287, 341, 1098, 1425, 1547
Mva1269I	GAATGC	1 cut(s)	748
MvaI	CCWGG	5 cut(s)	287, 341, 1098, 1425, 1547
MvnI	CGCG	3 cut(s)	120, 419, 1956
NaeI	GCCGGC	1 cut(s)	430
NdeI	CATATG	1 cut(s)	938
NgoMIV	GCCGGC	1 cut(s)	428
NlaIV	GGNNCC	1 cut(s)	847
NmeAIII	GCCGAG	1 cut(s)	670
NmuCI	GTSAC	2 cut(s)	239, 1147
NsbI	TGCGCA	1 cut(s)	2142
NsiI	ATGCAT	1 cut(s)	1692
NspI	RCATGY	3 cut(s)	1690, 1694, 2147
NspV	TTCGAA	1 cut(s)	24
PaeI	GCATGC	1 cut(s)	2147
PceI	AGGCCT	1 cut(s)	2158
PciSI	GCTCTTC	1 cut(s)	650
PcsI	WCGNNNNNNNCGW	6 cut(s)	138, 147, 162, 171, 249, 258
PctI	GAATGC	1 cut(s)	748
PdiI	GCCGGC	1 cut(s)	430
PfeI	GAWTC	6 cut(s)	280, 437, 497, 1860, 1877, 1994
PflMI	CCANNNNNTGG	1 cut(s)	892
PleI	GAGTC	4 cut(s)	84, 397, 619, 941
PpsI	GAGTC	4 cut(s)	84, 397, 619, 941
Ppu21I	YACGTR	1 cut(s)	1274
PpuMI	RGGWCCY	1 cut(s)	923
Psp124BI	GAGCTC	1 cut(s)	1833
Psp5II	RGGWCCY	1 cut(s)	923
Psp6I	CCWGG	5 cut(s)	285, 339, 1096, 1423, 1545
PspGI	CCWGG	5 cut(s)	285, 339, 1096, 1423, 1545
PspN4I	GGNNCC	1 cut(s)	847
PspPI	GGNCC	4 cut(s)	381, 923, 1543, 1837
PspPPI	RGGWCCY	1 cut(s)	923
PstI	CTGCAG	2 cut(s)	1477, 2041
PstNI	CAGNNNCTG	1 cut(s)	2243
PsuI	RGATCY	1 cut(s)	2210
RsaI	GTAC	4 cut(s)	338, 650, 870, 1377
RsaNI	GTAC	4 cut(s)	337, 649, 869, 1376
RseI	CAYNNNNRTG	2 cut(s)	671, 1685
SacI	GAGCTC	1 cut(s)	1833
SapI	GCTCTTC	1 cut(s)	650
SaqAI	TTAA	8 cut(s)	702, 750, 1065, 1119, 1515, 1632, 1647, 1791
Sau96I	GGNCC	4 cut(s)	381, 923, 1543, 1837
SchI	GAGTC	4 cut(s)	84, 397, 620, 942
ScrFI	CCNGG	5 cut(s)	287, 341, 1098, 1425, 1547
SduI	GDGCHC	2 cut(s)	946, 1833
SexAI	ACCWGGT	1 cut(s)	1423
SfaNI	GCATC	6 cut(s)	253, 466, 1017, 1064, 1128, 1596
SfcI	CTRYAG	4 cut(s)	927, 1215, 1473, 2037
SfuI	TTCGAA	1 cut(s)	24
SinI	GGWCC	3 cut(s)	923, 1543, 1837
SmiMI	CAYNNNNRTG	2 cut(s)	671, 1685
SmlI	CTYRAG	3 cut(s)	376, 1064, 1362
SmoI	CTYRAG	3 cut(s)	376, 1064, 1362
SpeI	ACTAGT	1 cut(s)	2024
SphI	GCATGC	1 cut(s)	2147
SseBI	AGGCCT	1 cut(s)	2158
SspMI	CTAG	6 cut(s)	1157, 1293, 1554, 2025, 2313, 2325
SstI	GAGCTC	1 cut(s)	1833
StuI	AGGCCT	1 cut(s)	2158
StyD4I	CCNGG	5 cut(s)	285, 339, 1096, 1423, 1545
StyI	CCWWGG	4 cut(s)	465, 588, 692, 1189
TaiI	ACGT	4 cut(s)	99, 1147, 1276, 1876
TatI	WGTACW	2 cut(s)	868, 1375
TauI	GCSGC	6 cut(s)	234, 237, 310, 461, 1622, 2255
TfiI	GAWTC	6 cut(s)	280, 437, 497, 1860, 1877, 1994
Tru1I	TTAA	8 cut(s)	702, 750, 1065, 1119, 1515, 1632, 1647, 1791
Tru9I	TTAA	8 cut(s)	702, 750, 1065, 1119, 1515, 1632, 1647, 1791
TscAI	CASTG	6 cut(s)	791, 1137, 1332, 1482, 1945, 2023
TseFI	GTSAC	2 cut(s)	239, 1147
TseI	GCWGC	6 cut(s)	461, 860, 1472, 1523, 1935, 2036
Tsp45I	GTSAC	2 cut(s)	239, 1147
TspDTI	ATGAA	8 cut(s)	259, 780, 1139, 1361, 1520, 1685, 1862, 2088
TspGWI	ACGGA	2 cut(s)	1001, 2318
TspRI	CASTG	6 cut(s)	791, 1137, 1332, 1482, 1945, 2023
Van91I	CCANNNNNTGG	1 cut(s)	892
Vha464I	CTTAAG	1 cut(s)	1064
VneI	GTGCAC	1 cut(s)	942
VpaK11BI	GGWCC	3 cut(s)	923, 1543, 1837
XapI	RAATTY	3 cut(s)	989, 1299, 2272
XbaI	TCTAGA	1 cut(s)	2312
XceI	RCATGY	3 cut(s)	1690, 1694, 2147
XcmI	CCANNNNNNNNNTGG	1 cut(s)	403
XspI	CTAG	6 cut(s)	1157, 1293, 1554, 2025, 2313, 2325
Zsp2I	ATGCAT	1 cut(s)	1692

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.