Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0031316.1

Orthogroup ID

OG0003007

Physical Location & Seq

Genomic Coordinates Forward (+)

160 .. 612

Gene Structure 453 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0031316.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

atgatcatatgtatgggttgcacaggtggaaagaagggtagggggagaggtggtggtggaggcggtggcggcagtggtcgaggtgtgcgcggggtggattttggtctgggtattggatataatccggaatccaatagttctccatcacctgctgttactagtcgatctgccgcagttacttctctaagaacaggaatgatgtctcaattcaagagtaagtttgtttctgcttcatcaaactctccaagtcagggttctggtaacagttcgagtgcgcatgccaacaagaggcctgcattacgaggatttgtagccggtggttctattggtggagacatacatagatctcagacaaccaatacagtttctccagctcctgcaccagtggcaaacatatcttctcagaattctggagaaaattcgagccagaagccgatggaaaggttaatttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

150

Amino Acids

14.87

Weight (kDa)

11.22

Isoelectric Point (pI)

68.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003007)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47330
fragaria_vesca	FvH4_1g27100 FvH4_1g27100 FvH4_1g27100
malus_domestica	MD00G1118300.v1.1 MD00G1118400.v1.1 MD09G1283400.v1.1 MD17G1274100.v1.1 MD17G1274800.v1.1 MD17G1275300.v1.1 MD17G1276500.v1.1
prunus_persica	Prupe.3G010900_v2.0.a1 Prupe.3G010900_v2.0.a1 Prupe.3G010900_v2.0.a1 Prupe.3G010900_v2.0.a1 Prupe.3G010900_v2.0.a1
pyrus_communis	pycom09g19130 pycom09g19140 pycom17g27210 pycom17g27330
rosa_chinensis	RchiOBHm_Chr3g0487421
rosa_laevigata	RLG00000023004
rosa_multiflora	Rmu_sc0008232.1_g000009 Rmu_sc0022533.1_g000001 Rmu_sc0031316.1_g000001
rosa_roxburghii	Rroxscaffold_6G00394790
rosa_rugosa	Rorug03G0234000
rosa_samantha	Rh2AG395100 Rh2CG381700 Rh3AG282000 Rh3BG317600 Rh3CG315700 Rh3DG313600 Rh4CG235900 Rh7AG337700 Rh7AG476200 Rh7CG355800
rosa_wichuraiana	Rw3G024970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	157
Acc16I	TGCGCA	1 cut(s)	276
Acc36I	ACCTGC	1 cut(s)	157
AccII	CGCG	1 cut(s)	90
AccIII	TCCGGA	1 cut(s)	124
AciI	CCGC	4 cut(s)	63, 69, 90, 171
AcsI	RAATTY	2 cut(s)	406, 418
AfiI	CCNNNNNNNGG	2 cut(s)	251, 288
AgsI	TTSAA	1 cut(s)	211
AhlI	ACTAGT	1 cut(s)	158
AjuI	GAANNNNNNNTTGG	2 cut(s)	238, 270
AluBI	AGCT	1 cut(s)	374
AluI	AGCT	1 cut(s)	374
Alw26I	GTCTC	2 cut(s)	207, 327
AlwNI	CAGNNNCTG	1 cut(s)	377
Aor13HI	TCCGGA	1 cut(s)	124
AoxI	GGCC	1 cut(s)	290
ApoI	RAATTY	2 cut(s)	406, 418
AspLEI	GCGC	2 cut(s)	90, 277
AsuHPI	GGTGA	1 cut(s)	138
BccI	CCATC	2 cut(s)	151, 430
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	2 cut(s)	207, 327
BcuI	ACTAGT	1 cut(s)	158
BfaI	CTAG	1 cut(s)	159
BfuAI	ACCTGC	1 cut(s)	157
BglII	AGATCT	1 cut(s)	344
BisI	GCNGC	2 cut(s)	70, 171
BlsI	GCNGC	2 cut(s)	71, 172
BpmI	CTGGAG	2 cut(s)	354, 432
BsaWI	WCCGGW	1 cut(s)	124
BsaXI	ACNNNNNCTCC	4 cut(s)	37, 67, 352, 382
Bsc4I	CCNNNNNNNGG	2 cut(s)	251, 288
Bse118I	RCCGGY	1 cut(s)	314
Bse1I	ACTGG	1 cut(s)	383
BseAI	TCCGGA	1 cut(s)	124
BseLI	CCNNNNNNNGG	2 cut(s)	251, 288
BseMII	CTCAG	2 cut(s)	362, 416
BseNI	ACTGG	1 cut(s)	383
BsgI	GTGCAG	1 cut(s)	363
Bsh1236I	CGCG	1 cut(s)	90
BshFI	GGCC	1 cut(s)	292
BsiSI	CCGG	2 cut(s)	125, 315
BslI	CCNNNNNNNGG	2 cut(s)	251, 288
BsmAI	GTCTC	2 cut(s)	207, 327
BsnI	GGCC	1 cut(s)	292
Bsp13I	TCCGGA	1 cut(s)	124
Bsp143I	GATC	3 cut(s)	3, 164, 344
BspACI	CCGC	4 cut(s)	63, 69, 90, 171
BspANI	GGCC	1 cut(s)	292
BspCNI	CTCAG	2 cut(s)	361, 415
BspEI	TCCGGA	1 cut(s)	124
BspFNI	CGCG	1 cut(s)	90
BspMI	ACCTGC	1 cut(s)	157
BsrFI	RCCGGY	1 cut(s)	314
BsrI	ACTGG	1 cut(s)	383
BssAI	RCCGGY	1 cut(s)	314
BssMI	GATC	3 cut(s)	3, 164, 344
Bst4CI	ACNGT	2 cut(s)	266, 364
BstC8I	GCNNGC	2 cut(s)	279, 294
BstDEI	CTNAG	3 cut(s)	185, 348, 402
BstFNI	CGCG	1 cut(s)	90
BstHHI	GCGC	2 cut(s)	90, 277
BstKTI	GATC	3 cut(s)	6, 167, 347
BstMAI	GTCTC	2 cut(s)	207, 327
BstMBI	GATC	3 cut(s)	3, 164, 344
BstMWI	GCNNNNNNNGC	2 cut(s)	69, 386
BstNSI	RCATGY	1 cut(s)	281
BstUI	CGCG	1 cut(s)	90
BstX2I	RGATCY	1 cut(s)	344
BstYI	RGATCY	1 cut(s)	344
BsuRI	GGCC	1 cut(s)	292
BtsI	GCAGTG	1 cut(s)	79
BtsIMutI	CAGTG	2 cut(s)	79, 390
BveI	ACCTGC	1 cut(s)	157
Cac8I	GCNNGC	2 cut(s)	279, 294
CaiI	CAGNNNCTG	1 cut(s)	377
CfoI	GCGC	2 cut(s)	90, 277
Cfr10I	RCCGGY	1 cut(s)	314
CviAII	CATG	1 cut(s)	278
CviJI	RGCY	5 cut(s)	292, 314, 374, 426, 433
CviKI_1	RGCY	5 cut(s)	292, 314, 374, 426, 433
DdeI	CTNAG	3 cut(s)	185, 348, 402
DpnI	GATC	3 cut(s)	5, 166, 346
DpnII	GATC	3 cut(s)	3, 164, 344
Eco147I	AGGCCT	1 cut(s)	292
EcoRI	GAATTC	1 cut(s)	406
FaeI	CATG	1 cut(s)	281
FaiI	YATR	8 cut(s)	8, 10, 14, 120, 279, 338, 342, 395
FatI	CATG	1 cut(s)	277
FauI	CCCGC	1 cut(s)	83
FauNDI	CATATG	1 cut(s)	8
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	2 cut(s)	70, 171
Fsp4HI	GCNGC	2 cut(s)	70, 171
FspAI	RTGCGCAY	1 cut(s)	276
FspBI	CTAG	1 cut(s)	159
FspI	TGCGCA	1 cut(s)	276
GlaI	GCGC	2 cut(s)	89, 276
GluI	GCNGC	2 cut(s)	70, 171
GsuI	CTGGAG	2 cut(s)	354, 432
HaeIII	GGCC	1 cut(s)	292
HapII	CCGG	2 cut(s)	125, 315
HhaI	GCGC	2 cut(s)	90, 277
Hin1II	CATG	1 cut(s)	281
Hin6I	GCGC	2 cut(s)	88, 275
HinP1I	GCGC	2 cut(s)	88, 275
HinfI	GANTC	1 cut(s)	128
HpaII	CCGG	2 cut(s)	125, 315
HphI	GGTGA	1 cut(s)	138
Hpy188I	TCNGA	2 cut(s)	351, 405
Hpy188III	TCNNGA	3 cut(s)	125, 211, 411
HpyAV	CCTTC	1 cut(s)	28
HpyCH4III	ACNGT	2 cut(s)	266, 364
HpyCH4V	TGCA	3 cut(s)	21, 296, 380
HpyF10VI	GCNNNNNNNGC	2 cut(s)	69, 386
HpyF3I	CTNAG	3 cut(s)	185, 348, 402
Hsp92II	CATG	1 cut(s)	281
HspAI	GCGC	2 cut(s)	88, 275
Kpn2I	TCCGGA	1 cut(s)	124
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	3 cut(s)	3, 164, 344
LmnI	GCTCC	1 cut(s)	379
MaeI	CTAG	1 cut(s)	159
MaeIII	GTNAC	3 cut(s)	154, 175, 260
MalI	GATC	3 cut(s)	5, 166, 346
MboI	GATC	3 cut(s)	3, 164, 344
MboII	GAAGA	1 cut(s)	390
MflI	RGATCY	1 cut(s)	344
MluCI	AATT	4 cut(s)	206, 406, 418, 447
MnlI	CCTC	5 cut(s)	41, 53, 74, 282, 296
MroI	TCCGGA	1 cut(s)	124
MseI	TTAA	2 cut(s)	446, 451
MslI	CAYNNNNRTG	1 cut(s)	11
MspI	CCGG	2 cut(s)	125, 315
MvnI	CGCG	1 cut(s)	90
MwoI	GCNNNNNNNGC	2 cut(s)	69, 386
NdeI	CATATG	1 cut(s)	8
NdeII	GATC	3 cut(s)	3, 164, 344
NlaIII	CATG	1 cut(s)	281
NsbI	TGCGCA	1 cut(s)	276
NspI	RCATGY	1 cut(s)	281
PaeI	GCATGC	1 cut(s)	281
PaqCI	CACCTGC	1 cut(s)	157
PceI	AGGCCT	1 cut(s)	292
PfeI	GAWTC	1 cut(s)	128
PkrI	GCNGC	2 cut(s)	71, 172
PstNI	CAGNNNCTG	1 cut(s)	377
PsuI	RGATCY	1 cut(s)	344
RseI	CAYNNNNRTG	1 cut(s)	11
SaqAI	TTAA	2 cut(s)	446, 451
SatI	GCNGC	2 cut(s)	70, 171
Sau3AI	GATC	3 cut(s)	3, 164, 344
SetI	ASST	6 cut(s)	28, 52, 85, 151, 376, 446
SmiMI	CAYNNNNRTG	1 cut(s)	11
SpeI	ACTAGT	1 cut(s)	158
SphI	GCATGC	1 cut(s)	281
Sse9I	AATT	4 cut(s)	206, 406, 418, 447
SseBI	AGGCCT	1 cut(s)	292
SsiI	CCGC	4 cut(s)	63, 69, 90, 171
SspMI	CTAG	1 cut(s)	159
StuI	AGGCCT	1 cut(s)	292
TaaI	ACNGT	2 cut(s)	266, 364
TaqI	TCGA	4 cut(s)	79, 163, 269, 422
TasI	AATT	4 cut(s)	206, 406, 418, 447
TauI	GCSGC	2 cut(s)	72, 173
TfiI	GAWTC	1 cut(s)	128
Tru1I	TTAA	2 cut(s)	446, 451
Tru9I	TTAA	2 cut(s)	446, 451
TscAI	CASTG	2 cut(s)	79, 390
TspDTI	ATGAA	1 cut(s)	222
TspRI	CASTG	2 cut(s)	79, 390
XapI	RAATTY	2 cut(s)	406, 418
XceI	RCATGY	1 cut(s)	281
XspI	CTAG	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.