Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0003007

Physical Location & Seq

Genomic Coordinates Reverse (-)

32521493 .. 32525855

Gene Structure 4363 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG317600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1971 bp

ATGTCGAAGAGGAAGTTCGGATTCGAAGGGTTCGGCATAAACCGGCAATCGACCTACAACTTCGAGCAGTCGCAACAAGACCCTCAGCGACTCTACGTCCCTCCTTCCTCCTCCCGCGCTCACGGCCACGACAATTACGAAGACACCGACCTTGACAACATCGATTACGACGACATTGAAGCCGGAAACACTCACGGTAACGGCGGAGGAGACGGCGGTGACGAAGAAGTCGATCCTCTCGATGCTTTCATGGAGGGGATTCACCAGGAGGTGAGGTCAGCTCCGCCGCCCAAGCCCAAGGAGAAGGCCGACAAGTACCAGGACGATGACGAGGAGGATCATCTGGAGAGTTTCTTGAGGGCCAAGAAGGACGCCACGCTGACTCTGGCCTCCGACGCGCTCCACGCCGGCTATGATTCCGACGAGGAGGTCTATGCCGCTGCCAAGGCTGTGGATGCCGGAATGTTGGAGTATGATTCCGATGACAATCCCGTTGTTGTGGACAGGAGGAAGATCGAGCCAATTTCAGCTCTGGATCATACTTCCATTGACTACGAGCCATTCACCAAGGACTTCTACGAGGAGAAAGAGTCGATTTCAGGGATGAGTGAGCAGGATGTTGCTGAGTACCGGAAGAGCTTGGCCATCCGAGTGTCTGGCTTTGATGTACCAAGGCCAATTAAGACATTTGATGACTGTGCGTTTTCTCCGCAACTCATGAATGCAATTAAAAAACAAGAGTATGAAAAGCCTACACCGATACAGTGCCAAGCTTTGCCCATAGTTCTTTCTGGGAGGGATATCATTGGTATAGCAAAAACTGGCTCCGGAAAGACTGCCGCTTTTGTACTTCCCATGATTTGCCATATTATGGATCAGCCAGAACTTCAGAAAGAAGAAGGTCCTATAGGAGTCATATGTGCACCTACCAGAGAACTGGCGCAACAAATACACTTAGAGGCCAAGAAATTTGCTAAATCACATGGCATCCGTGTCTGTGCCGTATATGGTGGGATGTCGAAGCTTGATCAGTTCAAAGAACTTAAGGCAGGATGCGAGATAGTTGTAGCTACTCCTGGGAGATTAATAGACATGATTAAAATGAAGGCACTGACGATGCTACGTGTAACTTACCTAGTGCTTGATGAGGCTGATCGGATGTTTGACCTTGGTTTTGAGCCTCAAATTAGGTCTATAGTTGGTCAGATTAGGCCAGACCGGCAAACGCTACTCTTTTCTGCTACAATGCCACGTAAAGTTGAAAAGCTGGCTAGAGAAATTCTTTCTGACCCTGTAAGAGTTACAGTGGGTGAGGTGGGAATGGCCAATGAGGATATCACTCAAGTTGTTCATGTACTTCCTTCTGAAGCTGAGAAATTGCCGTGGCTTCTTGAAAGATTACCTGGTATGATTGATGACGGTGATGTTCTCGTATTTGCTTCTAAAAAAGCTGCAGTGGATGAGATCGAAACACAGCTTTCTCAGAAAGGTTTTAAAGTTGCAGCTATTCATGGTGATAAGGACCAGGCTACTAGGATGGATATTATGCAAAAATATAAATCTGGCATCTACCATGTTCTGATTGCAACTGATGTTGCTGCTCGTGGTCTTAACATCAAGTCAATTAAGTCAGTTGTGAACTTTGATATTGCAAAAGACATGGACATGCATGTTCATCGTATTGGTAGAACGGGTCGTGCCGGTGATAAAGATGGGACTGCATACACTCTTATCACGCATAAAGAGGCACGGTTTGCTGGAGAATTGGTTAATAGCTTAGTTGGTGCTGGTCAGAATGTTCCCGCAGAGCTCATGGACCTTGCGATGAAGGATGGAAGATTCAGGTCTAAACGTGATTCAAGAAAAGGAGGTATGACTTTGAATCATGCTATAACTGTTATTTTCTTTAGGTGCTTTTGCAGAGGATACTCATGCGGCAGCATTTTGTTGAGGCAGCCCATGATATATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

656

Amino Acids

72.94

Weight (kDa)

5.38

Isoelectric Point (pI)

40.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	252 - 422	3.1e-52	DEAD/DEAH box helicase
Helicase_C	PF00271	469 - 568	3.4e-26	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003007)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47330
fragaria_vesca	FvH4_1g27100 FvH4_1g27100 FvH4_1g27100
malus_domestica	MD00G1118300.v1.1 MD00G1118400.v1.1 MD09G1283400.v1.1 MD17G1274100.v1.1 MD17G1274800.v1.1 MD17G1275300.v1.1 MD17G1276500.v1.1
prunus_persica	Prupe.3G010900_v2.0.a1 Prupe.3G010900_v2.0.a1 Prupe.3G010900_v2.0.a1 Prupe.3G010900_v2.0.a1 Prupe.3G010900_v2.0.a1
pyrus_communis	pycom09g19130 pycom09g19140 pycom17g27210 pycom17g27330
rosa_chinensis	RchiOBHm_Chr3g0487421
rosa_laevigata	RLG00000023004
rosa_multiflora	Rmu_sc0008232.1_g000009 Rmu_sc0022533.1_g000001 Rmu_sc0031316.1_g000001
rosa_roxburghii	Rroxscaffold_6G00394790
rosa_rugosa	Rorug03G0234000
rosa_samantha	Rh2AG395100 Rh2CG381700 Rh3AG282000 Rh3BG317600 Rh3CG315700 Rh3DG313600 Rh4CG235900 Rh7AG337700 Rh7AG476200 Rh7CG355800
rosa_wichuraiana	Rw3G024970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	227, 428
AccB7I	CCANNNNNTGG	1 cut(s)	871
AccII	CGCG	2 cut(s)	117, 398
AccIII	TCCGGA	1 cut(s)	827
AclWI	GGATC	4 cut(s)	227, 345, 543, 882
AcoI	YGGCCR	3 cut(s)	124, 642, 1323
AcsI	RAATTY	2 cut(s)	968, 1278
AcuI	CTGAAG	2 cut(s)	872, 1386
AcyI	GRCGYC	1 cut(s)	372
AfaI	GTAC	5 cut(s)	317, 629, 669, 849, 1356
AfiI	CCNNNNNNNGG	1 cut(s)	871
AflII	CTTAAG	1 cut(s)	1043
AflIII	ACRYGT	1 cut(s)	1123
AgsI	TTSAA	6 cut(s)	179, 1036, 1262, 1394, 1860, 1882
AhdI	GACNNNNNGTC	1 cut(s)	95
AjnI	CCWGG	5 cut(s)	264, 318, 1075, 1402, 1524
Alw21I	GWGCWC	2 cut(s)	925, 1812
Alw26I	GTCTC	1 cut(s)	204
Alw44I	GTGCAC	1 cut(s)	921
AlwI	GGATC	4 cut(s)	227, 345, 543, 882
Aor13HI	TCCGGA	1 cut(s)	827
AoxI	GGCC	9 cut(s)	124, 306, 360, 387, 642, 674, 960, 1211, 1323
ApaLI	GTGCAC	1 cut(s)	921
ApeKI	GCWGC	6 cut(s)	440, 1451, 1502, 1598, 1938, 1954
ApoI	RAATTY	2 cut(s)	968, 1278
ArsI	GACNNNNNNTTYG	2 cut(s)	1157, 1189
AseI	ATTAAT	1 cut(s)	1085
AspLEI	GCGC	3 cut(s)	119, 400, 943
AspS9I	GGNCC	4 cut(s)	360, 902, 1522, 1816
AsuHPI	GGTGA	8 cut(s)	230, 254, 283, 556, 1322, 1433, 1526, 1715
AsuII	TTCGAA	1 cut(s)	24
AvaII	GGWCC	3 cut(s)	902, 1522, 1816
BaeGI	GKGCMC	1 cut(s)	925
BalI	TGGCCA	2 cut(s)	644, 1325
BanII	GRGCYC	1 cut(s)	1812
BauI	CACGAG	1 cut(s)	1602
BbsI	GAAGAC	1 cut(s)	147
Bbv12I	GWGCWC	2 cut(s)	925, 1812
BbvCI	CCTCAGC	1 cut(s)	84
BbvI	GCAGC	6 cut(s)	427, 1438, 1514, 1585, 1950, 1966
BccI	CCATC	4 cut(s)	653, 1531, 1706, 1826
BceAI	ACGGC	5 cut(s)	139, 217, 229, 986, 1366
BcgI	CGANNNNNNTGC	2 cut(s)	1658, 1692
BciT130I	CCWGG	5 cut(s)	266, 320, 1077, 1404, 1526
BciVI	GTATCC	1 cut(s)	1919
BclI	TGATCA	1 cut(s)	1027
BcoDI	GTCTC	1 cut(s)	204
BfaI	CTAG	3 cut(s)	1136, 1272, 1533
BfmI	CTRYAG	3 cut(s)	906, 1194, 1452
BfrI	CTTAAG	1 cut(s)	1043
BfuI	GTATCC	1 cut(s)	1919
BglI	GCCNNNNNGGC	1 cut(s)	1219
Bme1390I	CCNGG	5 cut(s)	266, 320, 1077, 1404, 1526
Bme18I	GGWCC	3 cut(s)	902, 1522, 1816
BmeRI	GACNNNNNGTC	1 cut(s)	95
BmgT120I	GGNCC	4 cut(s)	360, 902, 1522, 1816
BmiI	GGNNCC	1 cut(s)	826
BmrFI	CCNGG	5 cut(s)	266, 320, 1077, 1404, 1526
BmsI	GCATC	6 cut(s)	232, 445, 996, 1043, 1107, 1575
BpiI	GAAGAC	1 cut(s)	147
BplI	GAGNNNNNCTC	2 cut(s)	265, 297
BpmI	CTGGAG	2 cut(s)	365, 1779
Bpu10I	CCTNAGC	1 cut(s)	84
Bpu14I	TTCGAA	1 cut(s)	24
BpuEI	CTTGAG	2 cut(s)	376, 1326
Bsa29I	ATCGAT	1 cut(s)	162
BsaAI	YACGTR	2 cut(s)	1124, 1253
BsaBI	GATNNNNATC	1 cut(s)	486
BsaHI	GRCGYC	1 cut(s)	372
BsaJI	CCNNGG	7 cut(s)	297, 444, 567, 671, 1076, 1168, 1382
BsaWI	WCCGGW	2 cut(s)	630, 827
BsaXI	ACNNNNNCTCC	6 cut(s)	260, 290, 575, 605, 1752, 1782
Bsc4I	CCNNNNNNNGG	1 cut(s)	871
Bse118I	RCCGGY	4 cut(s)	42, 407, 1218, 1700
Bse1I	ACTGG	2 cut(s)	826, 942
Bse8I	GATNNNNATC	1 cut(s)	486
BseAI	TCCGGA	1 cut(s)	827
BseBI	CCWGG	5 cut(s)	266, 320, 1077, 1404, 1526
BseCI	ATCGAT	1 cut(s)	162
BseDI	CCNNGG	7 cut(s)	297, 444, 567, 671, 1076, 1168, 1382
BseJI	GATNNNNATC	1 cut(s)	486
BseLI	CCNNNNNNNGG	1 cut(s)	871
BseMII	CTCAG	4 cut(s)	98, 615, 1362, 1496
BseNI	ACTGG	2 cut(s)	826, 942
BseRI	GAGGAG	5 cut(s)	100, 222, 347, 440, 596
BseSI	GKGCMC	1 cut(s)	925
BseXI	GCAGC	6 cut(s)	427, 1438, 1514, 1585, 1950, 1966
Bsh1236I	CGCG	2 cut(s)	117, 398
BshFI	GGCC	9 cut(s)	126, 308, 362, 389, 644, 676, 962, 1213, 1325
BshVI	ATCGAT	1 cut(s)	162
BsiHKAI	GWGCWC	2 cut(s)	925, 1812
BsiSI	CCGG	8 cut(s)	43, 183, 408, 459, 631, 828, 1219, 1701
BslFI	GGGAC	2 cut(s)	83, 1729
BslI	CCNNNNNNNGG	1 cut(s)	871
BsmAI	GTCTC	1 cut(s)	204
BsmBI	CGTCTC	1 cut(s)	204
BsmFI	GGGAC	2 cut(s)	83, 1729
BsmI	GAATGC	1 cut(s)	727
BsnI	GGCC	9 cut(s)	126, 308, 362, 389, 644, 676, 962, 1213, 1325
Bsp119I	TTCGAA	1 cut(s)	24
Bsp1286I	GDGCHC	2 cut(s)	925, 1812
Bsp13I	TCCGGA	1 cut(s)	827
Bsp143I	GATC	8 cut(s)	232, 337, 513, 535, 874, 1027, 1153, 1464
BspANI	GGCC	9 cut(s)	126, 308, 362, 389, 644, 676, 962, 1213, 1325
BspCNI	CTCAG	4 cut(s)	97, 616, 1363, 1495
BspDI	ATCGAT	1 cut(s)	162
BspEI	TCCGGA	1 cut(s)	827
BspFNI	CGCG	2 cut(s)	117, 398
BspHI	TCATGA	1 cut(s)	717
BspLI	GGNNCC	1 cut(s)	826
BspMAI	CTGCAG	1 cut(s)	1456
BspPI	GGATC	4 cut(s)	227, 345, 543, 882
BspQI	GCTCTTC	1 cut(s)	629
BspT104I	TTCGAA	1 cut(s)	24
BspTI	CTTAAG	1 cut(s)	1043
BsrFI	RCCGGY	4 cut(s)	42, 407, 1218, 1700
BsrI	ACTGG	2 cut(s)	826, 942
BssAI	RCCGGY	4 cut(s)	42, 407, 1218, 1700
BssECI	CCNNGG	7 cut(s)	297, 444, 567, 671, 1076, 1168, 1382
BssMI	GATC	8 cut(s)	232, 337, 513, 535, 874, 1027, 1153, 1464
BssNI	GRCGYC	1 cut(s)	372
BssSI	CACGAG	1 cut(s)	1602
BssT1I	CCWWGG	5 cut(s)	297, 444, 567, 671, 1168
Bst2BI	CACGAG	1 cut(s)	1602
Bst2UI	CCWGG	5 cut(s)	266, 320, 1077, 1404, 1526
Bst4CI	ACNGT	7 cut(s)	197, 698, 765, 1306, 1421, 1752, 1897
Bst6I	CTCTTC	2 cut(s)	2, 629
BstACI	GRCGYC	1 cut(s)	372
BstAFI	CTTAAG	1 cut(s)	1043
BstAPI	GCANNNNNTGC	1 cut(s)	1754
BstBAI	YACGTR	2 cut(s)	1124, 1253
BstBI	TTCGAA	1 cut(s)	24
BstC8I	GCNNGC	2 cut(s)	409, 1269
BstDEI	CTNAG	6 cut(s)	84, 624, 955, 1371, 1482, 1777
BstDSI	CCRYGG	1 cut(s)	1382
BstFNI	CGCG	2 cut(s)	117, 398
BstHHI	GCGC	3 cut(s)	119, 400, 943
BstKTI	GATC	8 cut(s)	235, 340, 516, 538, 877, 1030, 1156, 1467
BstMAI	GTCTC	1 cut(s)	204
BstMBI	GATC	8 cut(s)	232, 337, 513, 535, 874, 1027, 1153, 1464
BstMWI	GCNNNNNNNGC	8 cut(s)	123, 292, 395, 404, 446, 455, 1219, 1754
BstNI	CCWGG	5 cut(s)	266, 320, 1077, 1404, 1526
BstNSI	RCATGY	2 cut(s)	1669, 1673
BstSCI	CCNGG	5 cut(s)	264, 318, 1075, 1402, 1524
BstSFI	CTRYAG	3 cut(s)	906, 1194, 1452
BstSLI	GKGCMC	1 cut(s)	925
BstUI	CGCG	2 cut(s)	117, 398
BstV1I	GCAGC	6 cut(s)	427, 1438, 1514, 1585, 1950, 1966
BstV2I	GAAGAC	1 cut(s)	147
BstXI	CCANNNNNNTGG	2 cut(s)	451, 937
Bsu15I	ATCGAT	1 cut(s)	162
BsuI	GTATCC	1 cut(s)	1919
BsuRI	GGCC	9 cut(s)	126, 308, 362, 389, 644, 676, 962, 1213, 1325
BsuTUI	ATCGAT	1 cut(s)	162
BtgI	CCRYGG	1 cut(s)	1382
BtgZI	GCGATG	1 cut(s)	1838
BtsI	GCAGTG	1 cut(s)	1461
BtsIMutI	CAGTG	4 cut(s)	770, 1109, 1311, 1461
Cac8I	GCNNGC	2 cut(s)	409, 1269
CciI	TCATGA	1 cut(s)	717
CfoI	GCGC	3 cut(s)	119, 400, 943
Cfr10I	RCCGGY	4 cut(s)	42, 407, 1218, 1700
Cfr13I	GGNCC	4 cut(s)	360, 902, 1522, 1816
ClaI	ATCGAT	1 cut(s)	162
CseI	GACGC	2 cut(s)	380, 404
CsiI	ACCWGGT	1 cut(s)	1402
Csp6I	GTAC	5 cut(s)	316, 628, 668, 848, 1355
CviQI	GTAC	5 cut(s)	316, 628, 668, 848, 1355
DdeI	CTNAG	6 cut(s)	84, 624, 955, 1371, 1482, 1777
DpnI	GATC	8 cut(s)	234, 339, 515, 537, 876, 1029, 1155, 1466
DpnII	GATC	8 cut(s)	232, 337, 513, 535, 874, 1027, 1153, 1464
DraI	TTTAAA	1 cut(s)	1495
DrdI	GACNNNNNNGTC	2 cut(s)	227, 428
DriI	GACNNNNNGTC	1 cut(s)	95
DseDI	GACNNNNNNGTC	2 cut(s)	227, 428
EaeI	YGGCCR	3 cut(s)	124, 642, 1323
Eam1104I	CTCTTC	2 cut(s)	2, 629
Eam1105I	GACNNNNNGTC	1 cut(s)	95
EarI	CTCTTC	2 cut(s)	2, 629
EciI	GGCGGA	2 cut(s)	219, 273
Ecl136II	GAGCTC	1 cut(s)	1810
Eco130I	CCWWGG	5 cut(s)	297, 444, 567, 671, 1168
Eco24I	GRGCYC	1 cut(s)	1812
Eco32I	GATATC	2 cut(s)	802, 1336
Eco47I	GGWCC	3 cut(s)	902, 1522, 1816
Eco53kI	GAGCTC	1 cut(s)	1810
Eco57I	CTGAAG	2 cut(s)	872, 1386
EcoICRI	GAGCTC	1 cut(s)	1810
EcoO109I	RGGNCCY	1 cut(s)	902
EcoRII	CCWGG	5 cut(s)	264, 318, 1075, 1402, 1524
EcoRV	GATATC	2 cut(s)	802, 1336
EcoT14I	CCWWGG	5 cut(s)	297, 444, 567, 671, 1168
EcoT22I	ATGCAT	1 cut(s)	1671
EcoT38I	GRGCYC	1 cut(s)	1812
ErhI	CCWWGG	5 cut(s)	297, 444, 567, 671, 1168
Esp3I	CGTCTC	1 cut(s)	204
FaqI	GGGAC	2 cut(s)	83, 1729
FauI	CCCGC	2 cut(s)	122, 1810
FauNDI	CATATG	1 cut(s)	917
FbaI	TGATCA	1 cut(s)	1027
FriOI	GRGCYC	1 cut(s)	1812
FspBI	CTAG	3 cut(s)	1136, 1272, 1533
GlaI	GCGC	3 cut(s)	118, 399, 942
GsuI	CTGGAG	2 cut(s)	365, 1779
HaeIII	GGCC	9 cut(s)	126, 308, 362, 389, 644, 676, 962, 1213, 1325
HapII	CCGG	8 cut(s)	43, 183, 408, 459, 631, 828, 1219, 1701
HgaI	GACGC	2 cut(s)	380, 404
HhaI	GCGC	3 cut(s)	119, 400, 943
Hin1I	GRCGYC	1 cut(s)	372
Hin6I	GCGC	3 cut(s)	117, 398, 941
HinP1I	GCGC	3 cut(s)	117, 398, 941
HindIII	AAGCTT	2 cut(s)	771, 1022
HpaII	CCGG	8 cut(s)	43, 183, 408, 459, 631, 828, 1219, 1701
HphI	GGTGA	8 cut(s)	230, 254, 283, 556, 1322, 1433, 1526, 1715
Hpy166II	GTNNAC	3 cut(s)	502, 923, 1639
Hpy188III	TCNNGA	8 cut(s)	239, 344, 355, 533, 718, 828, 1391, 1860
Hpy8I	GTNNAC	3 cut(s)	502, 923, 1639
Hpy99I	CGWCG	3 cut(s)	173, 398, 425
HpyAV	CCTTC	8 cut(s)	20, 114, 298, 361, 893, 1099, 1371, 1822
HpyCH4III	ACNGT	7 cut(s)	197, 698, 765, 1306, 1421, 1752, 1897
HpyCH4IV	ACGT	4 cut(s)	96, 1123, 1252, 1852
HpyF10VI	GCNNNNNNNGC	8 cut(s)	123, 292, 395, 404, 446, 455, 1219, 1754
HpyF3I	CTNAG	6 cut(s)	84, 624, 955, 1371, 1482, 1777
HpySE526I	ACGT	4 cut(s)	96, 1123, 1252, 1852
Hsp92I	GRCGYC	1 cut(s)	372
HspAI	GCGC	3 cut(s)	117, 398, 941
Kpn2I	TCCGGA	1 cut(s)	827
KroI	GCCGGC	1 cut(s)	407
KroNI	GCCGGC	1 cut(s)	409
Ksp22I	TGATCA	1 cut(s)	1027
Kzo9I	GATC	8 cut(s)	232, 337, 513, 535, 874, 1027, 1153, 1464
LguI	GCTCTTC	1 cut(s)	629
LmnI	GCTCC	3 cut(s)	286, 405, 830
Lsp1109I	GCAGC	6 cut(s)	427, 1438, 1514, 1585, 1950, 1966
LweI	GCATC	6 cut(s)	232, 445, 996, 1043, 1107, 1575
MabI	ACCWGGT	1 cut(s)	1402
MaeI	CTAG	3 cut(s)	1136, 1272, 1533
MaeII	ACGT	4 cut(s)	96, 1123, 1252, 1852
MaeIII	GTNAC	4 cut(s)	197, 218, 1126, 1300
MalI	GATC	8 cut(s)	234, 339, 515, 537, 876, 1029, 1155, 1466
MboI	GATC	8 cut(s)	232, 337, 513, 535, 874, 1027, 1153, 1464
MboII	GAAGA	7 cut(s)	19, 152, 236, 523, 646, 908, 1848
MhlI	GDGCHC	2 cut(s)	925, 1812
MlsI	TGGCCA	2 cut(s)	644, 1325
MluNI	TGGCCA	2 cut(s)	644, 1325
MlyI	GAGTC	4 cut(s)	84, 376, 599, 921
MmeI	TCCRAC	3 cut(s)	417, 444, 447
Mox20I	TGGCCA	2 cut(s)	644, 1325
Mph1103I	ATGCAT	1 cut(s)	1671
MroI	TCCGGA	1 cut(s)	827
MroNI	GCCGGC	1 cut(s)	407
MscI	TGGCCA	2 cut(s)	644, 1325
MslI	CAYNNNNRTG	2 cut(s)	650, 1664
Msp20I	TGGCCA	2 cut(s)	644, 1325
MspA1I	CMGCKG	1 cut(s)	440
MspCI	CTTAAG	1 cut(s)	1043
MspI	CCGG	8 cut(s)	43, 183, 408, 459, 631, 828, 1219, 1701
MspR9I	CCNGG	5 cut(s)	266, 320, 1077, 1404, 1526
Mva1269I	GAATGC	1 cut(s)	727
MvaI	CCWGG	5 cut(s)	266, 320, 1077, 1404, 1526
MvnI	CGCG	2 cut(s)	117, 398
MwoI	GCNNNNNNNGC	8 cut(s)	123, 292, 395, 404, 446, 455, 1219, 1754
NaeI	GCCGGC	1 cut(s)	409
NdeI	CATATG	1 cut(s)	917
NdeII	GATC	8 cut(s)	232, 337, 513, 535, 874, 1027, 1153, 1464
NgoMIV	GCCGGC	1 cut(s)	407
NlaIV	GGNNCC	1 cut(s)	826
NmuCI	GTSAC	1 cut(s)	218
NsiI	ATGCAT	1 cut(s)	1671
NspI	RCATGY	2 cut(s)	1669, 1673
NspV	TTCGAA	1 cut(s)	24
PagI	TCATGA	1 cut(s)	717
PciSI	GCTCTTC	1 cut(s)	629
PcsI	WCGNNNNNNNCGW	6 cut(s)	135, 144, 168, 219, 228, 237
PctI	GAATGC	1 cut(s)	727
PdiI	GCCGGC	1 cut(s)	409
PfeI	GAWTC	7 cut(s)	21, 259, 416, 476, 1839, 1856, 1882
PflMI	CCANNNNNTGG	1 cut(s)	871
PleI	GAGTC	4 cut(s)	84, 376, 598, 920
PpsI	GAGTC	4 cut(s)	84, 376, 598, 920
Ppu21I	YACGTR	2 cut(s)	1124, 1253
PpuMI	RGGWCCY	1 cut(s)	902
PshBI	ATTAAT	1 cut(s)	1085
Psp124BI	GAGCTC	1 cut(s)	1812
Psp5II	RGGWCCY	1 cut(s)	902
Psp6I	CCWGG	5 cut(s)	264, 318, 1075, 1402, 1524
PspGI	CCWGG	5 cut(s)	264, 318, 1075, 1402, 1524
PspN4I	GGNNCC	1 cut(s)	826
PspPI	GGNCC	4 cut(s)	360, 902, 1522, 1816
PspPPI	RGGWCCY	1 cut(s)	902
PstI	CTGCAG	1 cut(s)	1456
RsaI	GTAC	5 cut(s)	317, 629, 669, 849, 1356
RsaNI	GTAC	5 cut(s)	316, 628, 668, 848, 1355
RseI	CAYNNNNRTG	2 cut(s)	650, 1664
SacI	GAGCTC	1 cut(s)	1812
SapI	GCTCTTC	1 cut(s)	629
Sau3AI	GATC	8 cut(s)	232, 337, 513, 535, 874, 1027, 1153, 1464
Sau96I	GGNCC	4 cut(s)	360, 902, 1522, 1816
SchI	GAGTC	4 cut(s)	84, 376, 599, 921
ScrFI	CCNGG	5 cut(s)	266, 320, 1077, 1404, 1526
SduI	GDGCHC	2 cut(s)	925, 1812
SexAI	ACCWGGT	1 cut(s)	1402
SfaNI	GCATC	6 cut(s)	232, 445, 996, 1043, 1107, 1575
SfcI	CTRYAG	3 cut(s)	906, 1194, 1452
SfuI	TTCGAA	1 cut(s)	24
SinI	GGWCC	3 cut(s)	902, 1522, 1816
SmiMI	CAYNNNNRTG	2 cut(s)	650, 1664
SmlI	CTYRAG	3 cut(s)	355, 1043, 1341
SmoI	CTYRAG	3 cut(s)	355, 1043, 1341
SspMI	CTAG	3 cut(s)	1136, 1272, 1533
SstI	GAGCTC	1 cut(s)	1812
StyD4I	CCNGG	5 cut(s)	264, 318, 1075, 1402, 1524
StyI	CCWWGG	5 cut(s)	297, 444, 567, 671, 1168
TaaI	ACNGT	7 cut(s)	197, 698, 765, 1306, 1421, 1752, 1897
TaiI	ACGT	4 cut(s)	99, 1126, 1255, 1855
TatI	WGTACW	2 cut(s)	847, 1354
TauI	GCSGC	4 cut(s)	289, 440, 842, 1938
TfiI	GAWTC	7 cut(s)	21, 259, 416, 476, 1839, 1856, 1882
TscAI	CASTG	4 cut(s)	770, 1116, 1311, 1461
TseFI	GTSAC	1 cut(s)	218
TseI	GCWGC	6 cut(s)	440, 1451, 1502, 1598, 1938, 1954
Tsp45I	GTSAC	1 cut(s)	218
TspDTI	ATGAA	8 cut(s)	238, 734, 759, 1118, 1340, 1499, 1664, 1841
TspGWI	ACGGA	1 cut(s)	980
TspRI	CASTG	4 cut(s)	770, 1116, 1311, 1461
Van91I	CCANNNNNTGG	1 cut(s)	871
Vha464I	CTTAAG	1 cut(s)	1043
VneI	GTGCAC	1 cut(s)	921
VpaK11BI	GGWCC	3 cut(s)	902, 1522, 1816
VspI	ATTAAT	1 cut(s)	1085
XapI	RAATTY	2 cut(s)	968, 1278
XceI	RCATGY	2 cut(s)	1669, 1673
XcmI	CCANNNNNNNNNTGG	1 cut(s)	382
XspI	CTAG	3 cut(s)	1136, 1272, 1533
Zsp2I	ATGCAT	1 cut(s)	1671

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.