Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0003007

Physical Location & Seq

Genomic Coordinates Reverse (-)

48032708 .. 48036274

Gene Structure 3567 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG235900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGAGCAACCATGTAATTAAGTTGCCAATTAATGATAGTAGCATTAGCAATCGCAACAAGACCCACAGCGACTCTACGTCCCTCCTTCCTCCTCCTCCGGCCTCCCGCGGCCACGACAATTACGAAGACACCAACCTTGACAACATCAATTACGACGACATTGAAGCCGGAAACACTCATGGTAACGGCGGAGGAGAAGCCGGCAGCGGCGGTGACGAAGAAGTCGATCCTCTCGATGCTTTCATGGAGGGGATTCACCAGGAGGTGAGGTCAGCTCCGCCGCCCAAGCCCAAGGAGAAGGCCGACAAGTACCAGGACGATGATGAGGAGGATCATCTAGAGAGTTTCTTGAGGGCCAAGAAGGACGCCACGCTAACTCTGGCCTTCGACGCGCTCCACACCGGCTATGATTCCGACGAGGAGGTCTATGCCGCTGCCAAGGTTGTGGATGCCGGAATGTTGGAGTATGATTCCGATGACAATCCCGTTGTTATGGACATGAGGAAGATCGAGCCAATTTCAGCTCTGGATCATACTTCCATTGACTACGAGCCATTCACCAAGGACTTCTACGAGGAGAAAGAGTCGATTTCAGGGATGAGTGAGCAGGATGTTGCCGAGTACTGGAAGAGCTTGGCCATCCGAGTGTCTGGCTTTGATGTACCTAGGCCAATTAAGACATTTGATGACTGCGTTTTCGCAGCAACTCATGAAAGCAATTTAAAAACAGAAGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

245

Amino Acids

27.16

Weight (kDa)

4.35

Isoelectric Point (pI)

49.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003007)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47330
fragaria_vesca	FvH4_1g27100 FvH4_1g27100 FvH4_1g27100
malus_domestica	MD00G1118300.v1.1 MD00G1118400.v1.1 MD09G1283400.v1.1 MD17G1274100.v1.1 MD17G1274800.v1.1 MD17G1275300.v1.1 MD17G1276500.v1.1
prunus_persica	Prupe.3G010900_v2.0.a1 Prupe.3G010900_v2.0.a1 Prupe.3G010900_v2.0.a1 Prupe.3G010900_v2.0.a1 Prupe.3G010900_v2.0.a1
pyrus_communis	pycom09g19130 pycom09g19140 pycom17g27210 pycom17g27330
rosa_chinensis	RchiOBHm_Chr3g0487421
rosa_laevigata	RLG00000023004
rosa_multiflora	Rmu_sc0008232.1_g000009 Rmu_sc0022533.1_g000001 Rmu_sc0031316.1_g000001
rosa_roxburghii	Rroxscaffold_6G00394790
rosa_rugosa	Rorug03G0234000
rosa_samantha	Rh2AG395100 Rh2CG381700 Rh3AG282000 Rh3BG317600 Rh3CG315700 Rh3DG313600 Rh4CG235900 Rh7AG337700 Rh7AG476200 Rh7CG355800
rosa_wichuraiana	Rw3G024970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	221, 422
AccII	CGCG	2 cut(s)	108, 392
AciI	CCGC	8 cut(s)	106, 108, 189, 207, 210, 278, 281, 432
AclWI	GGATC	3 cut(s)	221, 339, 537
AcoI	YGGCCR	2 cut(s)	109, 636
AcyI	GRCGYC	1 cut(s)	366
AfaI	GTAC	3 cut(s)	311, 623, 663
AfiI	CCNNNNNNNGG	1 cut(s)	624
AgsI	TTSAA	1 cut(s)	164
AhdI	GACNNNNNGTC	1 cut(s)	76
AjnI	CCWGG	2 cut(s)	258, 312
AluBI	AGCT	3 cut(s)	275, 524, 633
AluI	AGCT	3 cut(s)	275, 524, 633
AlwI	GGATC	3 cut(s)	221, 339, 537
AoxI	GGCC	7 cut(s)	99, 109, 300, 354, 381, 636, 668
ApeKI	GCWGC	3 cut(s)	204, 434, 701
ArsI	GACNNNNNNTTYG	2 cut(s)	680, 712
AseI	ATTAAT	1 cut(s)	30
AspA2I	CCTAGG	1 cut(s)	665
AspLEI	GCGC	1 cut(s)	394
AspS9I	GGNCC	1 cut(s)	354
AsuHPI	GGTGA	4 cut(s)	224, 248, 277, 550
AvrII	CCTAGG	1 cut(s)	665
BalI	TGGCCA	1 cut(s)	638
BbsI	GAAGAC	1 cut(s)	132
BbvI	GCAGC	3 cut(s)	216, 421, 713
BccI	CCATC	1 cut(s)	647
BceAI	ACGGC	1 cut(s)	202
BciT130I	CCWGG	2 cut(s)	260, 314
BfaI	CTAG	2 cut(s)	338, 666
BisI	GCNGC	7 cut(s)	109, 205, 208, 281, 432, 435, 702
BlnI	CCTAGG	1 cut(s)	665
BlsI	GCNGC	7 cut(s)	110, 206, 209, 282, 433, 436, 703
BmcAI	AGTACT	1 cut(s)	623
Bme1390I	CCNGG	2 cut(s)	260, 314
BmeRI	GACNNNNNGTC	1 cut(s)	76
BmgT120I	GGNCC	1 cut(s)	354
BmrFI	CCNGG	2 cut(s)	260, 314
BmsI	GCATC	2 cut(s)	226, 439
BpiI	GAAGAC	1 cut(s)	132
BplI	GAGNNNNNCTC	2 cut(s)	259, 291
BpuEI	CTTGAG	1 cut(s)	370
BsaBI	GATNNNNATC	1 cut(s)	480
BsaHI	GRCGYC	1 cut(s)	366
BsaJI	CCNNGG	5 cut(s)	106, 291, 438, 561, 665
BsaXI	ACNNNNNCTCC	4 cut(s)	254, 284, 569, 599
Bsc4I	CCNNNNNNNGG	1 cut(s)	624
Bse118I	RCCGGY	2 cut(s)	200, 401
Bse1I	ACTGG	1 cut(s)	629
Bse8I	GATNNNNATC	1 cut(s)	480
BseBI	CCWGG	2 cut(s)	260, 314
BseDI	CCNNGG	5 cut(s)	106, 291, 438, 561, 665
BseGI	GGATG	4 cut(s)	454, 603, 616, 639
BseJI	GATNNNNATC	1 cut(s)	480
BseLI	CCNNNNNNNGG	1 cut(s)	624
BseNI	ACTGG	1 cut(s)	629
BseRI	GAGGAG	6 cut(s)	81, 84, 207, 341, 434, 590
BseXI	GCAGC	3 cut(s)	216, 421, 713
Bsh1236I	CGCG	2 cut(s)	108, 392
BshFI	GGCC	7 cut(s)	101, 111, 302, 356, 383, 638, 670
BsiSI	CCGG	5 cut(s)	98, 168, 201, 402, 453
BslFI	GGGAC	1 cut(s)	64
BslI	CCNNNNNNNGG	1 cut(s)	624
BsmFI	GGGAC	1 cut(s)	64
BsnI	GGCC	7 cut(s)	101, 111, 302, 356, 383, 638, 670
Bsp143I	GATC	4 cut(s)	226, 331, 507, 529
BspACI	CCGC	8 cut(s)	106, 108, 189, 207, 210, 278, 281, 432
BspANI	GGCC	7 cut(s)	101, 111, 302, 356, 383, 638, 670
BspFNI	CGCG	2 cut(s)	108, 392
BspHI	TCATGA	1 cut(s)	709
BspPI	GGATC	3 cut(s)	221, 339, 537
BspQI	GCTCTTC	1 cut(s)	623
BsrFI	RCCGGY	2 cut(s)	200, 401
BsrI	ACTGG	1 cut(s)	629
BssAI	RCCGGY	2 cut(s)	200, 401
BssECI	CCNNGG	5 cut(s)	106, 291, 438, 561, 665
BssMI	GATC	4 cut(s)	226, 331, 507, 529
BssNI	GRCGYC	1 cut(s)	366
BssT1I	CCWWGG	4 cut(s)	291, 438, 561, 665
Bst2UI	CCWGG	2 cut(s)	260, 314
Bst6I	CTCTTC	1 cut(s)	623
BstACI	GRCGYC	1 cut(s)	366
BstC8I	GCNNGC	1 cut(s)	202
BstDSI	CCRYGG	1 cut(s)	106
BstF5I	GGATG	4 cut(s)	454, 603, 616, 639
BstFNI	CGCG	2 cut(s)	108, 392
BstHHI	GCGC	1 cut(s)	394
BstKTI	GATC	4 cut(s)	229, 334, 510, 532
BstMBI	GATC	4 cut(s)	226, 331, 507, 529
BstMWI	GCNNNNNNNGC	2 cut(s)	286, 389
BstNI	CCWGG	2 cut(s)	260, 314
BstSCI	CCNGG	2 cut(s)	258, 312
BstUI	CGCG	2 cut(s)	108, 392
BstV1I	GCAGC	3 cut(s)	216, 421, 713
BstV2I	GAAGAC	1 cut(s)	132
BstXI	CCANNNNNNTGG	1 cut(s)	445
BsuRI	GGCC	7 cut(s)	101, 111, 302, 356, 383, 638, 670
BtgI	CCRYGG	1 cut(s)	106
BtsCI	GGATG	4 cut(s)	454, 603, 616, 639
Cac8I	GCNNGC	1 cut(s)	202
CciI	TCATGA	1 cut(s)	709
CfoI	GCGC	1 cut(s)	394
Cfr10I	RCCGGY	2 cut(s)	200, 401
Cfr13I	GGNCC	1 cut(s)	354
Cfr42I	CCGCGG	1 cut(s)	109
CseI	GACGC	2 cut(s)	374, 398
Csp6I	GTAC	3 cut(s)	310, 622, 662
CviAII	CATG	5 cut(s)	11, 179, 244, 499, 710
CviQI	GTAC	3 cut(s)	310, 622, 662
DpnI	GATC	4 cut(s)	228, 333, 509, 531
DpnII	GATC	4 cut(s)	226, 331, 507, 529
DraI	TTTAAA	1 cut(s)	723
DrdI	GACNNNNNNGTC	2 cut(s)	221, 422
DriI	GACNNNNNGTC	1 cut(s)	76
DseDI	GACNNNNNNGTC	2 cut(s)	221, 422
EaeI	YGGCCR	2 cut(s)	109, 636
Eam1104I	CTCTTC	1 cut(s)	623
Eam1105I	GACNNNNNGTC	1 cut(s)	76
EarI	CTCTTC	1 cut(s)	623
EciI	GGCGGA	2 cut(s)	204, 267
Eco130I	CCWWGG	4 cut(s)	291, 438, 561, 665
EcoRII	CCWGG	2 cut(s)	258, 312
EcoT14I	CCWWGG	4 cut(s)	291, 438, 561, 665
ErhI	CCWWGG	4 cut(s)	291, 438, 561, 665
FaeI	CATG	5 cut(s)	14, 182, 247, 502, 713
FaqI	GGGAC	1 cut(s)	64
FatI	CATG	5 cut(s)	10, 178, 243, 498, 709
FauI	CCCGC	1 cut(s)	113
Fnu4HI	GCNGC	7 cut(s)	109, 205, 208, 281, 432, 435, 702
FokI	GGATG	4 cut(s)	461, 610, 623, 626
Fsp4HI	GCNGC	7 cut(s)	109, 205, 208, 281, 432, 435, 702
FspBI	CTAG	2 cut(s)	338, 666
GlaI	GCGC	1 cut(s)	393
GluI	GCNGC	7 cut(s)	109, 205, 208, 281, 432, 435, 702
HaeIII	GGCC	7 cut(s)	101, 111, 302, 356, 383, 638, 670
HapII	CCGG	5 cut(s)	98, 168, 201, 402, 453
HgaI	GACGC	2 cut(s)	374, 398
HhaI	GCGC	1 cut(s)	394
Hin1I	GRCGYC	1 cut(s)	366
Hin1II	CATG	5 cut(s)	14, 182, 247, 502, 713
Hin6I	GCGC	1 cut(s)	392
HinP1I	GCGC	1 cut(s)	392
HinfI	GANTC	5 cut(s)	71, 253, 410, 470, 584
HpaII	CCGG	5 cut(s)	98, 168, 201, 402, 453
HphI	GGTGA	4 cut(s)	224, 248, 277, 550
Hpy188I	TCNGA	3 cut(s)	415, 475, 644
Hpy188III	TCNNGA	5 cut(s)	233, 338, 349, 527, 710
Hpy99I	CGWCG	3 cut(s)	158, 392, 419
HpyAV	CCTTC	4 cut(s)	95, 292, 355, 394
HpyCH4IV	ACGT	1 cut(s)	77
HpyF10VI	GCNNNNNNNGC	2 cut(s)	286, 389
HpySE526I	ACGT	1 cut(s)	77
Hsp92I	GRCGYC	1 cut(s)	366
Hsp92II	CATG	5 cut(s)	14, 182, 247, 502, 713
HspAI	GCGC	1 cut(s)	392
KroI	GCCGGC	1 cut(s)	200
KroNI	GCCGGC	1 cut(s)	202
KspI	CCGCGG	1 cut(s)	109
Kzo9I	GATC	4 cut(s)	226, 331, 507, 529
LguI	GCTCTTC	1 cut(s)	623
LmnI	GCTCC	2 cut(s)	280, 399
Lsp1109I	GCAGC	3 cut(s)	216, 421, 713
LweI	GCATC	2 cut(s)	226, 439
MaeI	CTAG	2 cut(s)	338, 666
MaeII	ACGT	1 cut(s)	77
MaeIII	GTNAC	2 cut(s)	182, 212
MalI	GATC	4 cut(s)	228, 333, 509, 531
MboI	GATC	4 cut(s)	226, 331, 507, 529
MboII	GAAGA	4 cut(s)	137, 230, 517, 640
MlsI	TGGCCA	1 cut(s)	638
MluCI	AATT	7 cut(s)	15, 27, 118, 148, 516, 672, 718
MluNI	TGGCCA	1 cut(s)	638
MlyI	GAGTC	2 cut(s)	65, 593
MmeI	TCCRAC	2 cut(s)	438, 441
Mox20I	TGGCCA	1 cut(s)	638
MroNI	GCCGGC	1 cut(s)	200
MscI	TGGCCA	1 cut(s)	638
MseI	TTAA	4 cut(s)	18, 30, 675, 722
MslI	CAYNNNNRTG	1 cut(s)	644
Msp20I	TGGCCA	1 cut(s)	638
MspA1I	CMGCKG	3 cut(s)	108, 207, 434
MspI	CCGG	5 cut(s)	98, 168, 201, 402, 453
MspR9I	CCNGG	2 cut(s)	260, 314
MvaI	CCWGG	2 cut(s)	260, 314
MvnI	CGCG	2 cut(s)	108, 392
MwoI	GCNNNNNNNGC	2 cut(s)	286, 389
NaeI	GCCGGC	1 cut(s)	202
NdeII	GATC	4 cut(s)	226, 331, 507, 529
NgoMIV	GCCGGC	1 cut(s)	200
NlaIII	CATG	5 cut(s)	14, 182, 247, 502, 713
NmeAIII	GCCGAG	1 cut(s)	643
NmuCI	GTSAC	1 cut(s)	212
PagI	TCATGA	1 cut(s)	709
PciSI	GCTCTTC	1 cut(s)	623
PcsI	WCGNNNNNNNCGW	3 cut(s)	120, 222, 231
PdiI	GCCGGC	1 cut(s)	202
PfeI	GAWTC	3 cut(s)	253, 410, 470
PkrI	GCNGC	7 cut(s)	110, 206, 209, 282, 433, 436, 703
PleI	GAGTC	2 cut(s)	65, 592
PpsI	GAGTC	2 cut(s)	65, 592
PshBI	ATTAAT	1 cut(s)	30
Psp6I	CCWGG	2 cut(s)	258, 312
PspGI	CCWGG	2 cut(s)	258, 312
PspPI	GGNCC	1 cut(s)	354
RsaI	GTAC	3 cut(s)	311, 623, 663
RsaNI	GTAC	3 cut(s)	310, 622, 662
RseI	CAYNNNNRTG	1 cut(s)	644
SacII	CCGCGG	1 cut(s)	109
SapI	GCTCTTC	1 cut(s)	623
SaqAI	TTAA	4 cut(s)	18, 30, 675, 722
SatI	GCNGC	7 cut(s)	109, 205, 208, 281, 432, 435, 702
Sau3AI	GATC	4 cut(s)	226, 331, 507, 529
Sau96I	GGNCC	1 cut(s)	354
ScaI	AGTACT	1 cut(s)	623
SchI	GAGTC	2 cut(s)	65, 593
ScrFI	CCNGG	2 cut(s)	260, 314
SfaNI	GCATC	2 cut(s)	226, 439
Sfr303I	CCGCGG	1 cut(s)	109
SgrBI	CCGCGG	1 cut(s)	109
SmiMI	CAYNNNNRTG	1 cut(s)	644
SmlI	CTYRAG	1 cut(s)	349
SmoI	CTYRAG	1 cut(s)	349
Sse9I	AATT	7 cut(s)	15, 27, 118, 148, 516, 672, 718
SsiI	CCGC	8 cut(s)	106, 108, 189, 207, 210, 278, 281, 432
SspMI	CTAG	2 cut(s)	338, 666
StyD4I	CCNGG	2 cut(s)	258, 312
StyI	CCWWGG	4 cut(s)	291, 438, 561, 665
TaiI	ACGT	1 cut(s)	80
TaqI	TCGA	5 cut(s)	225, 234, 387, 510, 587
TasI	AATT	7 cut(s)	15, 27, 118, 148, 516, 672, 718
TatI	WGTACW	1 cut(s)	621
TauI	GCSGC	4 cut(s)	111, 210, 283, 434
TfiI	GAWTC	3 cut(s)	253, 410, 470
Tru1I	TTAA	4 cut(s)	18, 30, 675, 722
Tru9I	TTAA	4 cut(s)	18, 30, 675, 722
TseFI	GTSAC	1 cut(s)	212
TseI	GCWGC	3 cut(s)	204, 434, 701
Tsp45I	GTSAC	1 cut(s)	212
TspDTI	ATGAA	2 cut(s)	232, 726
VspI	ATTAAT	1 cut(s)	30
XbaI	TCTAGA	1 cut(s)	337
XcmI	CCANNNNNNNNNTGG	1 cut(s)	376
XmaJI	CCTAGG	1 cut(s)	665
XspI	CTAG	2 cut(s)	338, 666
ZrmI	AGTACT	1 cut(s)	623

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.