Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0003007

Physical Location & Seq

Genomic Coordinates Reverse (-)

21649398 .. 21650118

Gene Structure 721 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0234000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGGCATTCTCAAAGACTTTCCTTCTTGTCGCCCTCGCCTTCGCTGTTCTCCTCATCTCTGCTGAGGTCTCGGCTCATCGTGACCTAGCTGAGACTACCACCACTACTCAAAAAGCCAACACTGACGGTTACCACGGACACGATCATGGACATGGCGGCCATGGAGGACACGGTGGACACGGAGGACATGGTGGACACGGAGGTCATGGAGGACATGGACCTCATGCTGTTGAGACTGAAACTGAGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

83

Amino Acids

8.42

Weight (kDa)

6.18

Isoelectric Point (pI)

12.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GRP	PF07172	1 - 73	4.3e-11	Glycine rich protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003007)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47330
fragaria_vesca	FvH4_1g27100 FvH4_1g27100 FvH4_1g27100
malus_domestica	MD00G1118300.v1.1 MD00G1118400.v1.1 MD09G1283400.v1.1 MD17G1274100.v1.1 MD17G1274800.v1.1 MD17G1275300.v1.1 MD17G1276500.v1.1
prunus_persica	Prupe.3G010900_v2.0.a1 Prupe.3G010900_v2.0.a1 Prupe.3G010900_v2.0.a1 Prupe.3G010900_v2.0.a1 Prupe.3G010900_v2.0.a1
pyrus_communis	pycom09g19130 pycom09g19140 pycom17g27210 pycom17g27330
rosa_chinensis	RchiOBHm_Chr3g0487421
rosa_laevigata	RLG00000023004
rosa_multiflora	Rmu_sc0008232.1_g000009 Rmu_sc0022533.1_g000001 Rmu_sc0031316.1_g000001
rosa_roxburghii	Rroxscaffold_6G00394790
rosa_rugosa	Rorug03G0234000
rosa_samantha	Rh2AG395100 Rh2CG381700 Rh3AG282000 Rh3BG317600 Rh3CG315700 Rh3DG313600 Rh4CG235900 Rh7AG337700 Rh7AG476200 Rh7CG355800
rosa_wichuraiana	Rw3G024970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	201
AciI	CCGC	1 cut(s)	156
AcoI	YGGCCR	1 cut(s)	157
AluBI	AGCT	1 cut(s)	89
AluI	AGCT	1 cut(s)	89
Alw26I	GTCTC	3 cut(s)	73, 86, 227
AoxI	GGCC	1 cut(s)	157
AspS9I	GGNCC	1 cut(s)	218
AvaII	GGWCC	1 cut(s)	218
BbvCI	CCTCAGC	1 cut(s)	63
BcoDI	GTCTC	3 cut(s)	73, 86, 227
BfaI	CTAG	2 cut(s)	86, 250
BisI	GCNGC	1 cut(s)	157
BlsI	GCNGC	1 cut(s)	158
Bme18I	GGWCC	1 cut(s)	218
BmgT120I	GGNCC	1 cut(s)	218
Bpu10I	CCTNAGC	1 cut(s)	63
BsaI	GGTCTC	1 cut(s)	73
BsaJI	CCNNGG	2 cut(s)	133, 160
BseDI	CCNNGG	2 cut(s)	133, 160
BseMII	CTCAG	3 cut(s)	54, 81, 234
BseRI	GAGGAG	1 cut(s)	41
BshFI	GGCC	1 cut(s)	159
BsmAI	GTCTC	3 cut(s)	73, 86, 227
BsmI	GAATGC	1 cut(s)	5
BsnI	GGCC	1 cut(s)	159
Bso31I	GGTCTC	1 cut(s)	73
Bsp143I	GATC	1 cut(s)	142
Bsp19I	CCATGG	1 cut(s)	160
BspACI	CCGC	1 cut(s)	156
BspANI	GGCC	1 cut(s)	159
BspCNI	CTCAG	3 cut(s)	55, 82, 235
BspTNI	GGTCTC	1 cut(s)	73
BssECI	CCNNGG	2 cut(s)	133, 160
BssMI	GATC	1 cut(s)	142
BssT1I	CCWWGG	1 cut(s)	160
Bst4CI	ACNGT	2 cut(s)	128, 173
BstDEI	CTNAG	3 cut(s)	63, 90, 243
BstDSI	CCRYGG	2 cut(s)	133, 160
BstEII	GGTNACC	1 cut(s)	128
BstKTI	GATC	1 cut(s)	145
BstMAI	GTCTC	3 cut(s)	73, 86, 227
BstMBI	GATC	1 cut(s)	142
BstPI	GGTNACC	1 cut(s)	128
BsuRI	GGCC	1 cut(s)	159
BtgI	CCRYGG	2 cut(s)	133, 160
BtsIMutI	CAGTG	1 cut(s)	120
Cfr13I	GGNCC	1 cut(s)	218
CviAII	CATG	7 cut(s)	146, 152, 161, 188, 206, 215, 224
CviJI	RGCY	4 cut(s)	74, 89, 116, 159
CviKI_1	RGCY	4 cut(s)	74, 89, 116, 159
DdeI	CTNAG	3 cut(s)	63, 90, 243
DpnI	GATC	1 cut(s)	144
DpnII	GATC	1 cut(s)	142
DrdI	GACNNNNNNGTC	1 cut(s)	201
DseDI	GACNNNNNNGTC	1 cut(s)	201
EaeI	YGGCCR	1 cut(s)	157
Eco130I	CCWWGG	1 cut(s)	160
Eco31I	GGTCTC	1 cut(s)	73
Eco47I	GGWCC	1 cut(s)	218
Eco91I	GGTNACC	1 cut(s)	128
EcoO65I	GGTNACC	1 cut(s)	128
EcoT14I	CCWWGG	1 cut(s)	160
ErhI	CCWWGG	1 cut(s)	160
FaeI	CATG	7 cut(s)	149, 155, 164, 191, 209, 218, 227
FaiI	YATR	7 cut(s)	147, 153, 162, 189, 207, 216, 225
FatI	CATG	7 cut(s)	145, 151, 160, 187, 205, 214, 223
Fnu4HI	GCNGC	1 cut(s)	157
Fsp4HI	GCNGC	1 cut(s)	157
FspBI	CTAG	2 cut(s)	86, 250
GluI	GCNGC	1 cut(s)	157
HaeIII	GGCC	1 cut(s)	159
Hin1II	CATG	7 cut(s)	149, 155, 164, 191, 209, 218, 227
Hpy166II	GTNNAC	2 cut(s)	176, 194
Hpy188III	TCNNGA	1 cut(s)	80
Hpy8I	GTNNAC	2 cut(s)	176, 194
HpyAV	CCTTC	2 cut(s)	32, 49
HpyCH4III	ACNGT	2 cut(s)	128, 173
HpyF3I	CTNAG	3 cut(s)	63, 90, 243
Hsp92II	CATG	7 cut(s)	149, 155, 164, 191, 209, 218, 227
Kzo9I	GATC	1 cut(s)	142
MaeI	CTAG	2 cut(s)	86, 250
MaeIII	GTNAC	2 cut(s)	80, 128
MalI	GATC	1 cut(s)	144
MboI	GATC	1 cut(s)	142
MnlI	CCTC	8 cut(s)	44, 58, 62, 158, 176, 194, 203, 231
MslI	CAYNNNNRTG	2 cut(s)	144, 150
Mva1269I	GAATGC	1 cut(s)	5
NcoI	CCATGG	1 cut(s)	160
NdeII	GATC	1 cut(s)	142
NlaIII	CATG	7 cut(s)	149, 155, 164, 191, 209, 218, 227
NmeAIII	GCCGAG	1 cut(s)	50
NmuCI	GTSAC	1 cut(s)	80
PctI	GAATGC	1 cut(s)	5
PkrI	GCNGC	1 cut(s)	158
PspEI	GGTNACC	1 cut(s)	128
PspPI	GGNCC	1 cut(s)	218
RseI	CAYNNNNRTG	2 cut(s)	144, 150
SatI	GCNGC	1 cut(s)	157
Sau3AI	GATC	1 cut(s)	142
Sau96I	GGNCC	1 cut(s)	218
SetI	ASST	5 cut(s)	69, 87, 91, 205, 223
SinI	GGWCC	1 cut(s)	218
SmiMI	CAYNNNNRTG	2 cut(s)	144, 150
SsiI	CCGC	1 cut(s)	156
SspMI	CTAG	2 cut(s)	86, 250
StyI	CCWWGG	1 cut(s)	160
TaaI	ACNGT	2 cut(s)	128, 173
TauI	GCSGC	1 cut(s)	159
TscAI	CASTG	1 cut(s)	127
TseFI	GTSAC	1 cut(s)	80
Tsp45I	GTSAC	1 cut(s)	80
TspGWI	ACGGA	3 cut(s)	150, 195, 213
TspRI	CASTG	1 cut(s)	127
VpaK11BI	GGWCC	1 cut(s)	218
XspI	CTAG	2 cut(s)	86, 250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.