Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0003007

Physical Location & Seq

Genomic Coordinates Forward (+)

19921190 .. 19923804

Gene Structure 2615 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g19140.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

ATGATAAGGGCAACTTACCTAGTACTTGATGAGGCTGATCGGATGTTTGACCTTGGGTTTGAGCCTCAAATTAGGTCTATTGTTGGTCAGATTCGACCAGACCGACAGACATTGCTCTTTTCTGCAACAATGCCTCGTAAAGTTGAAAAGTTGGCTAGGGAGATTCTCTCTGATCCTATAAGAGTTACAGTGGGTGAGGTGGGAATGGCCAATGAGGATATCACTCAGGTTGTTCATGTAATTCCTTCTGATGCTGAGAAGTTGCCCTGGCTTCTTGAGAAGTTACCTGGAATGATTGACGAGGGTGATGTTTTAGTGTTTGCTTCGAAAAAAGCTGCAGTGGATGAGATTGAGTCACAGCTTGCTCAGAAAGGTTTTAAAGTCACAGCTCTGCATGGTGACAAGGACCAGGCATCTCGGATGGATATTTTGCAAAAATTTAAATCTGGCATTTACCATGTTCTTGTTGCAACTGATGTTGCTGCCCGTGGTCTTGACATCAAGTCAATTAAGTCAGTTGTGAACTTTGATATTGCAAAAGACATGGACATGCACGTCCATCGAATTGGTAGAACAGGTCGTGCTGGTGATAAGGATGGCACTGCATACACTTTTATTACACAGAAAGAGGCACGTTTTGCTGGTGAGTTGGTTAATAGCTTGGTTGCTGCTGGTCAGATTGTTTCCACGGAGCTCATGGACCTTGCGATGAAGGATGGGAGATTCAGGTCCAAACGTGATTCAAGAAAAGGAGGTGGAAAGAAAGGTAGAGGGAGGGGAGGCGGTGGCGGCGGTGGTCGAGGTGTGCGTGGGGTGGATTTTGGTCTGGGAATTGGATATAATACGGAGTCCAATAATTCTTCATCGCATACCGTTGCTAGTCGATCTGCTACAGTAACTCCTGTGAGGACAGGAATGATGTCACAGTTCAAGACTAAATTCGTTGCTGCTTCATCCAACTCTCCAAGTCAAGCTTCAGGTAACAGCTATAGTGCACCCAGCAGACCAGCATTACGAGGATTTGTATCTGGTGGTTCAATTGGTGGGGATGTATATAGAACTCAGGCAACCAGTACAATTGCTTCTGCTCTTACCCCCGCTCCTACATCAGTGGTAAACGTATCTTCTCAGAACTCTGGAGTAAATGCAAGTCAGAAGCCCTCTGAAAGTTCTAGAGATAAACCTAGAGAAAGGCGGAGGTGGTCTGGTTGGGACTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

407

Amino Acids

43.64

Weight (kDa)

9.74

Isoelectric Point (pI)

36.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003007)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47330
fragaria_vesca	FvH4_1g27100 FvH4_1g27100 FvH4_1g27100
malus_domestica	MD00G1118300.v1.1 MD00G1118400.v1.1 MD09G1283400.v1.1 MD17G1274100.v1.1 MD17G1274800.v1.1 MD17G1275300.v1.1 MD17G1276500.v1.1
prunus_persica	Prupe.3G010900_v2.0.a1 Prupe.3G010900_v2.0.a1 Prupe.3G010900_v2.0.a1 Prupe.3G010900_v2.0.a1 Prupe.3G010900_v2.0.a1
pyrus_communis	pycom09g19130 pycom09g19140 pycom17g27210 pycom17g27330
rosa_chinensis	RchiOBHm_Chr3g0487421
rosa_laevigata	RLG00000023004
rosa_multiflora	Rmu_sc0008232.1_g000009 Rmu_sc0022533.1_g000001 Rmu_sc0031316.1_g000001
rosa_roxburghii	Rroxscaffold_6G00394790
rosa_rugosa	Rorug03G0234000
rosa_samantha	Rh2AG395100 Rh2CG381700 Rh3AG282000 Rh3BG317600 Rh3CG315700 Rh3DG313600 Rh4CG235900 Rh7AG337700 Rh7AG476200 Rh7CG355800
rosa_wichuraiana	Rw3G024970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	554
AccBSI	CCGCTC	1 cut(s)	1100
AciI	CCGC	5 cut(s)	783, 789, 792, 1098, 1195
AclWI	GGATC	1 cut(s)	167
AcoI	YGGCCR	1 cut(s)	207
AcsI	RAATTY	2 cut(s)	437, 938
AcuI	CTGAAG	1 cut(s)	960
AfaI	GTAC	2 cut(s)	24, 1075
AgsI	TTSAA	4 cut(s)	146, 744, 931, 1038
AhdI	GACNNNNNGTC	1 cut(s)	502
AjiI	CACGTC	1 cut(s)	556
AjnI	CCWGG	3 cut(s)	266, 286, 408
AjuI	GAANNNNNNNTTGG	2 cut(s)	958, 990
AluBI	AGCT	7 cut(s)	335, 361, 389, 660, 694, 974, 987
AluI	AGCT	7 cut(s)	335, 361, 389, 660, 694, 974, 987
Alw21I	GWGCWC	2 cut(s)	696, 997
Alw44I	GTGCAC	1 cut(s)	993
AlwI	GGATC	1 cut(s)	167
AoxI	GGCC	1 cut(s)	207
ApaLI	GTGCAC	1 cut(s)	993
ApeKI	GCWGC	4 cut(s)	335, 482, 668, 947
ApoI	RAATTY	2 cut(s)	437, 938
ArsI	GACNNNNNNTTYG	2 cut(s)	41, 73
AspS9I	GGNCC	3 cut(s)	406, 700, 729
AsuHPI	GGTGA	5 cut(s)	206, 317, 410, 599, 656
AsuII	TTCGAA	1 cut(s)	326
AvaII	GGWCC	3 cut(s)	406, 700, 729
BaeGI	GKGCMC	1 cut(s)	997
BalI	TGGCCA	1 cut(s)	209
BanII	GRGCYC	1 cut(s)	696
BarI	GAAGNNNNNNTAC	2 cut(s)	1066, 1098
Bbv12I	GWGCWC	2 cut(s)	696, 997
BbvI	GCAGC	4 cut(s)	322, 469, 655, 934
BccI	CCATC	4 cut(s)	415, 567, 590, 710
BcgI	CGANNNNNNTGC	2 cut(s)	542, 576
BciT130I	CCWGG	3 cut(s)	268, 288, 410
BfaI	CTAG	5 cut(s)	20, 156, 879, 1173, 1185
BfmI	CTRYAG	3 cut(s)	336, 891, 988
BisI	GCNGC	5 cut(s)	336, 483, 669, 790, 948
BlsI	GCNGC	5 cut(s)	337, 484, 670, 791, 949
BmcAI	AGTACT	1 cut(s)	24
Bme1390I	CCNGG	3 cut(s)	268, 288, 410
Bme18I	GGWCC	3 cut(s)	406, 700, 729
BmeRI	GACNNNNNGTC	1 cut(s)	502
BmgBI	CACGTC	1 cut(s)	556
BmgT120I	GGNCC	3 cut(s)	406, 700, 729
BmrFI	CCNGG	3 cut(s)	268, 288, 410
BmsI	GCATC	2 cut(s)	241, 422
BplI	GAGNNNNNCTC	2 cut(s)	152, 184
BpmI	CTGGAG	1 cut(s)	1158
Bpu14I	TTCGAA	1 cut(s)	326
BpuEI	CTTGAG	1 cut(s)	296
BsaBI	GATNNNNATC	1 cut(s)	1024
BsaJI	CCNNGG	4 cut(s)	52, 266, 487, 687
BsaXI	ACNNNNNCTCC	4 cut(s)	883, 913, 1084, 1114
Bse1I	ACTGG	1 cut(s)	1071
Bse3DI	GCAATG	1 cut(s)	110
Bse8I	GATNNNNATC	1 cut(s)	1024
BseBI	CCWGG	3 cut(s)	268, 288, 410
BseDI	CCNNGG	4 cut(s)	52, 266, 487, 687
BseGI	GGATG	7 cut(s)	48, 349, 426, 601, 721, 953, 1054
BseJI	GATNNNNATC	1 cut(s)	1024
BseMI	GCAATG	1 cut(s)	110
BseMII	CTCAG	5 cut(s)	239, 246, 380, 1076, 1142
BseNI	ACTGG	1 cut(s)	1071
BseSI	GKGCMC	1 cut(s)	997
BseXI	GCAGC	4 cut(s)	322, 469, 655, 934
BseYI	CCCAGC	1 cut(s)	998
BshFI	GGCC	1 cut(s)	209
BsiHKAI	GWGCWC	2 cut(s)	696, 997
BsnI	GGCC	1 cut(s)	209
Bsp119I	TTCGAA	1 cut(s)	326
Bsp1286I	GDGCHC	2 cut(s)	696, 997
Bsp143I	GATC	3 cut(s)	37, 172, 884
BspACI	CCGC	5 cut(s)	783, 789, 792, 1098, 1195
BspANI	GGCC	1 cut(s)	209
BspCNI	CTCAG	5 cut(s)	238, 247, 379, 1075, 1141
BspMAI	CTGCAG	1 cut(s)	340
BspPI	GGATC	1 cut(s)	167
BspT104I	TTCGAA	1 cut(s)	326
BsrBI	CCGCTC	1 cut(s)	1100
BsrDI	GCAATG	1 cut(s)	110
BsrI	ACTGG	1 cut(s)	1071
BssECI	CCNNGG	4 cut(s)	52, 266, 487, 687
BssMI	GATC	3 cut(s)	37, 172, 884
BssT1I	CCWWGG	1 cut(s)	52
Bst2UI	CCWGG	3 cut(s)	268, 288, 410
Bst4CI	ACNGT	5 cut(s)	190, 874, 895, 927, 1217
BstAPI	GCANNNNNTGC	1 cut(s)	638
BstBI	TTCGAA	1 cut(s)	326
BstC8I	GCNNGC	1 cut(s)	363
BstDEI	CTNAG	5 cut(s)	225, 255, 366, 1062, 1128
BstDSI	CCRYGG	2 cut(s)	487, 687
BstF5I	GGATG	7 cut(s)	48, 349, 426, 601, 721, 953, 1054
BstKTI	GATC	3 cut(s)	40, 175, 887
BstMBI	GATC	3 cut(s)	37, 172, 884
BstMWI	GCNNNNNNNGC	2 cut(s)	638, 789
BstNI	CCWGG	3 cut(s)	268, 288, 410
BstNSI	RCATGY	1 cut(s)	553
BstSCI	CCNGG	3 cut(s)	266, 286, 408
BstSFI	CTRYAG	3 cut(s)	336, 891, 988
BstSLI	GKGCMC	1 cut(s)	997
BstV1I	GCAGC	4 cut(s)	322, 469, 655, 934
BstXI	CCANNNNNNTGG	1 cut(s)	566
BsuRI	GGCC	1 cut(s)	209
BtgI	CCRYGG	2 cut(s)	487, 687
BtgZI	GCGATG	2 cut(s)	722, 849
BtrI	CACGTC	1 cut(s)	556
BtsCI	GGATG	7 cut(s)	48, 349, 426, 601, 721, 953, 1054
BtsI	GCAGTG	2 cut(s)	345, 600
BtsIMutI	CAGTG	4 cut(s)	195, 345, 600, 1116
Cac8I	GCNNGC	1 cut(s)	363
Cfr13I	GGNCC	3 cut(s)	406, 700, 729
Csp6I	GTAC	2 cut(s)	23, 1074
CviAII	CATG	6 cut(s)	236, 395, 458, 544, 550, 697
CviQI	GTAC	2 cut(s)	23, 1074
DdeI	CTNAG	5 cut(s)	225, 255, 366, 1062, 1128
DpnI	GATC	3 cut(s)	39, 174, 886
DpnII	GATC	3 cut(s)	37, 172, 884
DraI	TTTAAA	2 cut(s)	379, 442
DrdI	GACNNNNNNGTC	1 cut(s)	554
DriI	GACNNNNNGTC	1 cut(s)	502
DseDI	GACNNNNNNGTC	1 cut(s)	554
EaeI	YGGCCR	1 cut(s)	207
Eam1105I	GACNNNNNGTC	1 cut(s)	502
EciI	GGCGGA	1 cut(s)	1210
Ecl136II	GAGCTC	1 cut(s)	694
Eco130I	CCWWGG	1 cut(s)	52
Eco24I	GRGCYC	1 cut(s)	696
Eco32I	GATATC	1 cut(s)	220
Eco47I	GGWCC	3 cut(s)	406, 700, 729
Eco53kI	GAGCTC	1 cut(s)	694
Eco57I	CTGAAG	1 cut(s)	960
EcoICRI	GAGCTC	1 cut(s)	694
EcoRII	CCWGG	3 cut(s)	266, 286, 408
EcoRV	GATATC	1 cut(s)	220
EcoT14I	CCWWGG	1 cut(s)	52
EcoT38I	GRGCYC	1 cut(s)	696
ErhI	CCWWGG	1 cut(s)	52
FaeI	CATG	6 cut(s)	239, 398, 461, 547, 553, 700
FalI	AAGNNNNNCTT	3 cut(s)	30, 958, 990
FatI	CATG	6 cut(s)	235, 394, 457, 543, 549, 696
FauI	CCCGC	1 cut(s)	1105
Fnu4HI	GCNGC	5 cut(s)	336, 483, 669, 790, 948
FokI	GGATG	7 cut(s)	55, 356, 433, 608, 728, 940, 1061
FriOI	GRGCYC	1 cut(s)	696
Fsp4HI	GCNGC	5 cut(s)	336, 483, 669, 790, 948
FspBI	CTAG	5 cut(s)	20, 156, 879, 1173, 1185
GluI	GCNGC	5 cut(s)	336, 483, 669, 790, 948
GsaI	CCCAGC	1 cut(s)	1002
GsuI	CTGGAG	1 cut(s)	1158
HaeIII	GGCC	1 cut(s)	209
Hin1II	CATG	6 cut(s)	239, 398, 461, 547, 553, 700
HindIII	AAGCTT	1 cut(s)	972
HinfI	GANTC	6 cut(s)	91, 163, 353, 723, 740, 848
HphI	GGTGA	5 cut(s)	206, 317, 410, 599, 656
Hpy166II	GTNNAC	3 cut(s)	523, 995, 1117
Hpy188III	TCNNGA	6 cut(s)	275, 494, 744, 931, 1137, 1173
Hpy8I	GTNNAC	3 cut(s)	523, 995, 1117
HpyAV	CCTTC	2 cut(s)	255, 706
HpyCH4III	ACNGT	5 cut(s)	190, 874, 895, 927, 1217
HpyCH4IV	ACGT	4 cut(s)	555, 634, 736, 1119
HpyF10VI	GCNNNNNNNGC	2 cut(s)	638, 789
HpyF3I	CTNAG	5 cut(s)	225, 255, 366, 1062, 1128
HpySE526I	ACGT	4 cut(s)	555, 634, 736, 1119
Hsp92II	CATG	6 cut(s)	239, 398, 461, 547, 553, 700
Kzo9I	GATC	3 cut(s)	37, 172, 884
LmnI	GCTCC	2 cut(s)	691, 1105
Lsp1109I	GCAGC	4 cut(s)	322, 469, 655, 934
LweI	GCATC	2 cut(s)	241, 422
MaeI	CTAG	5 cut(s)	20, 156, 879, 1173, 1185
MaeII	ACGT	4 cut(s)	555, 634, 736, 1119
MaeIII	GTNAC	8 cut(s)	184, 282, 354, 382, 398, 895, 921, 980
MalI	GATC	3 cut(s)	39, 174, 886
MbiI	CCGCTC	1 cut(s)	1100
MboI	GATC	3 cut(s)	37, 172, 884
MboII	GAAGA	2 cut(s)	852, 1116
MfeI	CAATTG	2 cut(s)	1038, 1077
MhlI	GDGCHC	2 cut(s)	696, 997
MlsI	TGGCCA	1 cut(s)	209
MluNI	TGGCCA	1 cut(s)	209
MlyI	GAGTC	2 cut(s)	362, 857
MmeI	TCCRAC	1 cut(s)	981
Mox20I	TGGCCA	1 cut(s)	209
MscI	TGGCCA	1 cut(s)	209
MseI	TTAA	5 cut(s)	378, 441, 510, 654, 1219
MslI	CAYNNNNRTG	1 cut(s)	548
Msp20I	TGGCCA	1 cut(s)	209
MspR9I	CCNGG	3 cut(s)	268, 288, 410
MunI	CAATTG	2 cut(s)	1038, 1077
MvaI	CCWGG	3 cut(s)	268, 288, 410
MwoI	GCNNNNNNNGC	2 cut(s)	638, 789
NdeII	GATC	3 cut(s)	37, 172, 884
NlaIII	CATG	6 cut(s)	239, 398, 461, 547, 553, 700
NmuCI	GTSAC	4 cut(s)	354, 382, 398, 921
NspI	RCATGY	1 cut(s)	553
NspV	TTCGAA	1 cut(s)	326
PcsI	WCGNNNNNNNCGW	2 cut(s)	100, 805
PfeI	GAWTC	4 cut(s)	91, 163, 723, 740
PkrI	GCNGC	5 cut(s)	337, 484, 670, 791, 949
PleI	GAGTC	2 cut(s)	361, 856
PpsI	GAGTC	2 cut(s)	361, 856
Psp124BI	GAGCTC	1 cut(s)	696
Psp6I	CCWGG	3 cut(s)	266, 286, 408
PspFI	CCCAGC	1 cut(s)	998
PspGI	CCWGG	3 cut(s)	266, 286, 408
PspPI	GGNCC	3 cut(s)	406, 700, 729
PstI	CTGCAG	1 cut(s)	340
RsaI	GTAC	2 cut(s)	24, 1075
RsaNI	GTAC	2 cut(s)	23, 1074
RseI	CAYNNNNRTG	1 cut(s)	548
SacI	GAGCTC	1 cut(s)	696
SaqAI	TTAA	5 cut(s)	378, 441, 510, 654, 1219
SatI	GCNGC	5 cut(s)	336, 483, 669, 790, 948
Sau3AI	GATC	3 cut(s)	37, 172, 884
Sau96I	GGNCC	3 cut(s)	406, 700, 729
ScaI	AGTACT	1 cut(s)	24
SchI	GAGTC	2 cut(s)	362, 857
ScrFI	CCNGG	3 cut(s)	268, 288, 410
SduI	GDGCHC	2 cut(s)	696, 997
SfaNI	GCATC	2 cut(s)	241, 422
SfcI	CTRYAG	3 cut(s)	336, 891, 988
SfuI	TTCGAA	1 cut(s)	326
SinI	GGWCC	3 cut(s)	406, 700, 729
SmiI	ATTTAAAT	1 cut(s)	442
SmiMI	CAYNNNNRTG	1 cut(s)	548
SmlI	CTYRAG	1 cut(s)	275
SmoI	CTYRAG	1 cut(s)	275
SsiI	CCGC	5 cut(s)	783, 789, 792, 1098, 1195
SspMI	CTAG	5 cut(s)	20, 156, 879, 1173, 1185
SstI	GAGCTC	1 cut(s)	696
StyD4I	CCNGG	3 cut(s)	266, 286, 408
StyI	CCWWGG	1 cut(s)	52
SwaI	ATTTAAAT	1 cut(s)	442
TaaI	ACNGT	5 cut(s)	190, 874, 895, 927, 1217
TaiI	ACGT	4 cut(s)	558, 637, 739, 1122
TaqI	TCGA	5 cut(s)	94, 326, 562, 799, 883
TaqII	GACCGA	1 cut(s)	117
TatI	WGTACW	2 cut(s)	22, 1073
TauI	GCSGC	1 cut(s)	792
TfiI	GAWTC	4 cut(s)	91, 163, 723, 740
Tru1I	TTAA	5 cut(s)	378, 441, 510, 654, 1219
Tru9I	TTAA	5 cut(s)	378, 441, 510, 654, 1219
TscAI	CASTG	4 cut(s)	195, 345, 607, 1116
TseFI	GTSAC	4 cut(s)	354, 382, 398, 921
TseI	GCWGC	4 cut(s)	335, 482, 668, 947
Tsp45I	GTSAC	4 cut(s)	354, 382, 398, 921
TspDTI	ATGAA	4 cut(s)	224, 725, 852, 942
TspGWI	ACGGA	2 cut(s)	704, 860
TspRI	CASTG	4 cut(s)	195, 345, 607, 1116
VneI	GTGCAC	1 cut(s)	993
VpaK11BI	GGWCC	3 cut(s)	406, 700, 729
XapI	RAATTY	2 cut(s)	437, 938
XbaI	TCTAGA	1 cut(s)	1172
XceI	RCATGY	1 cut(s)	553
XcmI	CCANNNNNNNNNTGG	1 cut(s)	694
XspI	CTAG	5 cut(s)	20, 156, 879, 1173, 1185
ZrmI	AGTACT	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.