Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0003007

Physical Location & Seq

Genomic Coordinates Reverse (-)

684715 .. 689765

Gene Structure 5051 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G010900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2352 bp

ATGTCGAAGAGAAAATTCGGATTCGAAGGCTTTGGCATAAACAAGCAATCGACTTTCAACTTCGAGCGGTCCCAGCAAGCGCCTCAGCGACTATACGTGCCTCCGTCGTCGCGTGGACAAAGCCACGACAACTACGAAGACACCGACCTTGACAACATCGATTACGACGATAACGATGGTTCCAAGGACCCTGGCAATAACAACAATCACGACGAAGGTGGCGGTGGCGGTGAAAATGATGAAATTGACCCTCTTGACGCGTTCATGGAGAGCATTCACGAGGAGGTGAGGTCGGCGCCGCCCCCGAAGCCGAAAGAGAAGGCTGAGAAGTACAAGGACGATGAGGAGGATGATCCTATGGAGAGTTTTTTGAGGGCCAAGAAGGACGTGACGCTGACGCTGGCCTCCGATGCGTTACACGCTGGATACGACTCCGACGAGGAGGTCTATGCGGCTGCGAAGGCCGTCGATGCGGGAATGTTGGAGTACGATTCGGATGATAATCCCATTGTTCTGGACAAGAGGAAAATTGAGCCGATTGCAGCTCTCGATCATAGTTCGATCGACTACGAGTCCTTTAATAAGGATTTTTACGAGGAGAAAGAGTCAATTTCAGGGATGAGTGAGGAGGATGTTGCTGAGTACAAGAAGAGCTTGGCCATCCGTGCGTCAGGTTTTGATGTACCGAGGCCACTTAAGACATTTGAAGAGTGTGGATTTTCTTCACAGCTCGTGAGTGCAATAAAGAAACAAGATTATGAAAAGCCTACACCTATACAGTGCCAAGCTCTACCCATAGTTCTTTCTGGGAGAGATATCATTGGTATTGCAAAAACTGGTTCTGGAAAGACTGCAGCCTTTGTCCTTCCTATGATAGTCCACATTATGGATCAGCCGGAACTTCAGAAAGAAGAGGGTCCTATTGGAGTGATATGTGCACCTACTAGAGAGCTGGCGCACCAAATATACTTAGAGGCCAAGAAATTTTCCAAATCACATGGGATACGTGTCTCTGCTGTATACGGTGGAATGTCTAAGCTTGATCAATTCAAAGAACTTAAGGCAGGATGTGAGATAGTTGTTGCTACTCCTGGGAGATTGATAGACATGCTTAAAATGAAGGCACTGACGATGCTGAGGGCAACTTACCTAGTACTTGATGAGGCTGATCGGATGTTTGACCTTGGGTTTGAGCCTCAAATTAGGTCTATTGTTGGTCAGATTCGGCCAGACCGACAGACATTGCTCTTTTCTGCGACAATGCCCCGTAAAGTTGAAAAGTTGGCCAGGGAGATTCTCTCTGATCCAATAAGAGTTACAGTGGGTGAGGTGGGAATGGCCAATGAGGATATCACTCAGGTTGTTCAAGTAATTCCTACTGATGCTGAGAAGTTGCCTTGGCTTCTTGAGAAGTTACCTGGAATGATCGATGAGGGTGATGTTTTAGTATTTGCTTCAAAAAAAGCTGCAGTGGATGAGATTGAATCACAGCTTTCCCAGAAGGGTTTTAAAGTCACAGCTCTGCATGGTGACAAGGACCAGGCATCTCGGATGGATATTTTGCAAAAATTTAAATCTGGCATTTACCATGTTCTTATTGCAACTGATGTTGCTGCTCGTGGTCTTGACATCAAGTCAATTAAGTCAGTTGTGAACTTTGATATTGCAAAAGACATGGACATGCACGTCCATCGAATTGGTAGAACAGGTCGTGCTGGTGATAAAGATGGGACTGCATACACCCTTATAACTCAGAAAGAGGCACGGTTTGCTGGTGAATTGGTTAATAGCTTGGTTGCTGCTGGTCAGAATGTCTCCACGGAGCTCATGGACCTTGCAATGAAGGATGGCAGATTCAGGTCTAAACGTGATTCAAGAAAAGGAGGTGGAAAGAAGGGTAGAGGGAGGGGCGGTGGTGGTGGTGGCGGCGGCGGCGGCGGTCGAGGTGTGCGTGGGGTGGATTATGGTCTGGGTATTGGATATAATTCGGAATCCAATAATTCATCATCTCATACTCCTACTAGTCGATCTGCTGCAGTAACTTCTCTGAGGACAGGAATGATGTCTCAGTTCAAGACCAAGTTTGTTGCTGCTGCATCAAACTCTCCAAGTCAGGGTTCAGGTAACAGCTCTAGTGTTCCCCAGAGACCAGCATTAAGAGGATTTGTATCGGGTGGCTCCATTGGCGGGGACATATTTAGAACTCAGGCAACAAATACAGTTACTCCTGCTCCTACATCAGTCGTAAACATATCTTCTCAGAACTCTGGAGAAAATGCCAGTCAGAAGCCTTCTGAAAGTTCTAGAGATAAACCTAGAGAACGTCGGAGGCGCTCTGGTTGGGATTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

784

Amino Acids

85.28

Weight (kDa)

5.74

Isoelectric Point (pI)

44.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003007)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47330
fragaria_vesca	FvH4_1g27100 FvH4_1g27100 FvH4_1g27100
malus_domestica	MD00G1118300.v1.1 MD00G1118400.v1.1 MD09G1283400.v1.1 MD17G1274100.v1.1 MD17G1274800.v1.1 MD17G1275300.v1.1 MD17G1276500.v1.1
prunus_persica	Prupe.3G010900_v2.0.a1 Prupe.3G010900_v2.0.a1 Prupe.3G010900_v2.0.a1 Prupe.3G010900_v2.0.a1 Prupe.3G010900_v2.0.a1
pyrus_communis	pycom09g19130 pycom09g19140 pycom17g27210 pycom17g27330
rosa_chinensis	RchiOBHm_Chr3g0487421
rosa_laevigata	RLG00000023004
rosa_multiflora	Rmu_sc0008232.1_g000009 Rmu_sc0022533.1_g000001 Rmu_sc0031316.1_g000001
rosa_roxburghii	Rroxscaffold_6G00394790
rosa_rugosa	Rorug03G0234000
rosa_samantha	Rh2AG395100 Rh2CG381700 Rh3AG282000 Rh3BG317600 Rh3CG315700 Rh3DG313600 Rh4CG235900 Rh7AG337700 Rh7AG476200 Rh7CG355800
rosa_wichuraiana	Rw3G024970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1748
AasI	GACNNNNNNGTC	2 cut(s)	443, 1685
AccB1I	GGYRCC	1 cut(s)	295
AccB7I	CCANNNNNTGG	1 cut(s)	886
AccBSI	CCGCTC	1 cut(s)	67
AccI	GTMKAC	1 cut(s)	1020
AccII	CGCG	2 cut(s)	112, 260
AclWI	GGATC	3 cut(s)	347, 897, 1298
AcoI	YGGCCR	4 cut(s)	657, 1226, 1284, 1338
AcsI	RAATTY	3 cut(s)	14, 983, 1568
AcuI	CTGAAG	1 cut(s)	887
AcyI	GRCGYC	1 cut(s)	296
AfaI	GTAC	5 cut(s)	332, 488, 644, 684, 1155
AfiI	CCNNNNNNNGG	3 cut(s)	886, 2114, 2187
AflII	CTTAAG	2 cut(s)	695, 1058
AflIII	ACRYGT	2 cut(s)	258, 1006
AgsI	TTSAA	9 cut(s)	58, 707, 1051, 1277, 1367, 1458, 1484, 1875, 2074
AhdI	GACNNNNNGTC	2 cut(s)	571, 1633
AhlI	ACTAGT	1 cut(s)	2021
AjiI	CACGTC	2 cut(s)	388, 1687
AjnI	CCWGG	5 cut(s)	190, 1090, 1286, 1417, 1539
AjuI	GAANNNNNNNTTGG	2 cut(s)	2101, 2133
Alw21I	GWGCWC	2 cut(s)	940, 1827
Alw26I	GTCTC	4 cut(s)	1015, 1819, 2070, 2140
Alw44I	GTGCAC	1 cut(s)	936
AlwI	GGATC	3 cut(s)	347, 897, 1298
AoxI	GGCC	9 cut(s)	375, 402, 462, 657, 689, 975, 1226, 1284, 1338
ApaLI	GTGCAC	1 cut(s)	936
ApeKI	GCWGC	9 cut(s)	455, 542, 854, 1466, 1613, 1799, 2033, 2090, 2093
ApoI	RAATTY	3 cut(s)	14, 983, 1568
ArsI	GACNNNNNNTTYG	2 cut(s)	1172, 1204
AspLEI	GCGC	4 cut(s)	82, 298, 958, 2334
AspS9I	GGNCC	6 cut(s)	69, 187, 375, 917, 1537, 1831
AsuHPI	GGTGA	7 cut(s)	242, 298, 1337, 1448, 1541, 1730, 1787
AsuII	TTCGAA	1 cut(s)	24
AvaII	GGWCC	5 cut(s)	69, 187, 917, 1537, 1831
BaeGI	GKGCMC	1 cut(s)	940
BalI	TGGCCA	3 cut(s)	659, 1286, 1340
BanI	GGYRCC	1 cut(s)	295
BanII	GRGCYC	1 cut(s)	1827
BauI	CACGAG	3 cut(s)	278, 731, 1617
BbsI	GAAGAC	1 cut(s)	144
Bbv12I	GWGCWC	2 cut(s)	940, 1827
BbvCI	CCTCAGC	2 cut(s)	84, 1136
BbvI	GCAGC	9 cut(s)	442, 554, 866, 1453, 1600, 1786, 2020, 2077, 2080
BccI	CCATC	6 cut(s)	170, 668, 1546, 1698, 1721, 1841
BceAI	ACGGC	1 cut(s)	449
BcgI	CGANNNNNNTGC	2 cut(s)	1673, 1707
BciT130I	CCWGG	5 cut(s)	192, 1092, 1288, 1419, 1541
BciVI	GTATCC	2 cut(s)	419, 996
BclI	TGATCA	1 cut(s)	1042
BcoDI	GTCTC	4 cut(s)	1015, 1819, 2070, 2140
BcuI	ACTAGT	1 cut(s)	2021
BfaI	CTAG	6 cut(s)	945, 1151, 2022, 2133, 2304, 2316
BfmI	CTRYAG	3 cut(s)	852, 1467, 2034
BfoI	RGCGCY	3 cut(s)	83, 299, 2335
BfrI	CTTAAG	2 cut(s)	695, 1058
BfuI	GTATCC	2 cut(s)	419, 996
BmcAI	AGTACT	1 cut(s)	1155
Bme1390I	CCNGG	5 cut(s)	192, 1092, 1288, 1419, 1541
Bme18I	GGWCC	5 cut(s)	69, 187, 917, 1537, 1831
BmeRI	GACNNNNNGTC	2 cut(s)	571, 1633
BmgBI	CACGTC	2 cut(s)	388, 1687
BmgT120I	GGNCC	6 cut(s)	69, 187, 375, 917, 1537, 1831
BmiI	GGNNCC	6 cut(s)	71, 181, 189, 297, 918, 2179
BmrFI	CCNGG	5 cut(s)	192, 1092, 1288, 1419, 1541
BmsI	GCATC	6 cut(s)	400, 460, 1122, 1372, 1553, 2105
BpiI	GAAGAC	1 cut(s)	144
BplI	GAGNNNNNCTC	2 cut(s)	1283, 1315
BpmI	CTGGAG	1 cut(s)	2289
Bpu10I	CCTNAGC	2 cut(s)	84, 1136
Bpu14I	TTCGAA	1 cut(s)	24
BpuEI	CTTGAG	1 cut(s)	1427
Bsa29I	ATCGAT	2 cut(s)	159, 1428
BsaAI	YACGTR	2 cut(s)	97, 1007
BsaBI	GATNNNNATC	2 cut(s)	501, 2167
BsaHI	GRCGYC	1 cut(s)	296
BsaI	GGTCTC	1 cut(s)	2140
BsaJI	CCNNGG	8 cut(s)	183, 190, 686, 1091, 1183, 1287, 1397, 1818
Bsc4I	CCNNNNNNNGG	3 cut(s)	886, 2114, 2187
Bse1I	ACTGG	2 cut(s)	841, 2280
Bse3DI	GCAATG	2 cut(s)	1241, 1845
Bse8I	GATNNNNATC	2 cut(s)	501, 2167
BseBI	CCWGG	5 cut(s)	192, 1092, 1288, 1419, 1541
BseCI	ATCGAT	2 cut(s)	159, 1428
BseDI	CCNNGG	8 cut(s)	183, 190, 686, 1091, 1183, 1287, 1397, 1818
BseJI	GATNNNNATC	2 cut(s)	501, 2167
BseLI	CCNNNNNNNGG	3 cut(s)	886, 2114, 2187
BseMI	GCAATG	2 cut(s)	1241, 1845
BseNI	ACTGG	2 cut(s)	841, 2280
BseRI	GAGGAG	5 cut(s)	296, 359, 455, 611, 641
BseSI	GKGCMC	1 cut(s)	940
BseXI	GCAGC	9 cut(s)	442, 554, 866, 1453, 1600, 1786, 2020, 2077, 2080
BseYI	CCCAGC	1 cut(s)	72
Bsh1236I	CGCG	2 cut(s)	112, 260
Bsh1285I	CGRYCG	2 cut(s)	564, 1942
BshFI	GGCC	9 cut(s)	377, 404, 464, 659, 691, 977, 1228, 1286, 1340
BshNI	GGYRCC	1 cut(s)	295
BshVI	ATCGAT	2 cut(s)	159, 1428
BsiEI	CGRYCG	2 cut(s)	564, 1942
BsiHKAI	GWGCWC	2 cut(s)	940, 1827
BsiSI	CCGG	1 cut(s)	896
BslFI	GGGAC	3 cut(s)	55, 1744, 2204
BslI	CCNNNNNNNGG	3 cut(s)	886, 2114, 2187
BsmAI	GTCTC	4 cut(s)	1015, 1819, 2070, 2140
BsmFI	GGGAC	3 cut(s)	55, 1744, 2204
BsmI	GAATGC	1 cut(s)	273
BsnI	GGCC	9 cut(s)	377, 404, 464, 659, 691, 977, 1228, 1286, 1340
Bso31I	GGTCTC	1 cut(s)	2140
Bsp119I	TTCGAA	1 cut(s)	24
Bsp1286I	GDGCHC	2 cut(s)	940, 1827
Bsp143I	GATC	9 cut(s)	352, 550, 561, 889, 1042, 1168, 1303, 1425, 2027
BspANI	GGCC	9 cut(s)	377, 404, 464, 659, 691, 977, 1228, 1286, 1340
BspDI	ATCGAT	2 cut(s)	159, 1428
BspFNI	CGCG	2 cut(s)	112, 260
BspLI	GGNNCC	6 cut(s)	71, 181, 189, 297, 918, 2179
BspMAI	CTGCAG	3 cut(s)	856, 1471, 2038
BspPI	GGATC	3 cut(s)	347, 897, 1298
BspQI	GCTCTTC	1 cut(s)	644
BspT104I	TTCGAA	1 cut(s)	24
BspT107I	GGYRCC	1 cut(s)	295
BspTI	CTTAAG	2 cut(s)	695, 1058
BspTNI	GGTCTC	1 cut(s)	2140
BsrBI	CCGCTC	1 cut(s)	67
BsrDI	GCAATG	2 cut(s)	1241, 1845
BsrI	ACTGG	2 cut(s)	841, 2280
BssECI	CCNNGG	8 cut(s)	183, 190, 686, 1091, 1183, 1287, 1397, 1818
BssMI	GATC	9 cut(s)	352, 550, 561, 889, 1042, 1168, 1303, 1425, 2027
BssNAI	GTATAC	1 cut(s)	1021
BssNI	GRCGYC	1 cut(s)	296
BssSI	CACGAG	3 cut(s)	278, 731, 1617
BssT1I	CCWWGG	3 cut(s)	183, 1183, 1397
Bst1107I	GTATAC	1 cut(s)	1021
Bst2BI	CACGAG	3 cut(s)	278, 731, 1617
Bst2UI	CCWGG	5 cut(s)	192, 1092, 1288, 1419, 1541
Bst4CI	ACNGT	5 cut(s)	780, 1025, 1321, 1767, 2221
Bst6I	CTCTTC	4 cut(s)	2, 644, 702, 906
BstACI	GRCGYC	1 cut(s)	296
BstAFI	CTTAAG	2 cut(s)	695, 1058
BstAPI	GCANNNNNTGC	1 cut(s)	1769
BstBAI	YACGTR	2 cut(s)	97, 1007
BstBI	TTCGAA	1 cut(s)	24
BstC8I	GCNNGC	3 cut(s)	78, 402, 954
BstDSI	CCRYGG	1 cut(s)	1818
BstFNI	CGCG	2 cut(s)	112, 260
BstH2I	RGCGCY	3 cut(s)	83, 299, 2335
BstHHI	GCGC	4 cut(s)	82, 298, 958, 2334
BstKTI	GATC	9 cut(s)	355, 553, 564, 892, 1045, 1171, 1306, 1428, 2030
BstMAI	GTCTC	4 cut(s)	1015, 1819, 2070, 2140
BstMBI	GATC	9 cut(s)	352, 550, 561, 889, 1042, 1168, 1303, 1425, 2027
BstMCI	CGRYCG	2 cut(s)	564, 1942
BstNI	CCWGG	5 cut(s)	192, 1092, 1288, 1419, 1541
BstNSI	RCATGY	2 cut(s)	1111, 1684
BstSCI	CCNGG	5 cut(s)	190, 1090, 1286, 1417, 1539
BstSFI	CTRYAG	3 cut(s)	852, 1467, 2034
BstSLI	GKGCMC	1 cut(s)	940
BstUI	CGCG	2 cut(s)	112, 260
BstV1I	GCAGC	9 cut(s)	442, 554, 866, 1453, 1600, 1786, 2020, 2077, 2080
BstV2I	GAAGAC	1 cut(s)	144
BstXI	CCANNNNNNTGG	2 cut(s)	514, 1697
BstZ17I	GTATAC	1 cut(s)	1021
Bsu15I	ATCGAT	2 cut(s)	159, 1428
BsuI	GTATCC	2 cut(s)	419, 996
BsuRI	GGCC	9 cut(s)	377, 404, 464, 659, 691, 977, 1228, 1286, 1340
BsuTUI	ATCGAT	2 cut(s)	159, 1428
BtgI	CCRYGG	1 cut(s)	1818
BtrI	CACGTC	2 cut(s)	388, 1687
BtsI	GCAGTG	1 cut(s)	1476
BtsIMutI	CAGTG	4 cut(s)	785, 1124, 1326, 1476
Cac8I	GCNNGC	3 cut(s)	78, 402, 954
CfoI	GCGC	4 cut(s)	82, 298, 958, 2334
Cfr13I	GGNCC	6 cut(s)	69, 187, 375, 917, 1537, 1831
ClaI	ATCGAT	2 cut(s)	159, 1428
CseI	GACGC	4 cut(s)	266, 400, 406, 657
Csp6I	GTAC	5 cut(s)	331, 487, 643, 683, 1154
CviAII	CATG	8 cut(s)	265, 998, 1108, 1526, 1589, 1675, 1681, 1828
CviQI	GTAC	5 cut(s)	331, 487, 643, 683, 1154
DinI	GGCGCC	1 cut(s)	297
DpnI	GATC	9 cut(s)	354, 552, 563, 891, 1044, 1170, 1305, 1427, 2029
DpnII	GATC	9 cut(s)	352, 550, 561, 889, 1042, 1168, 1303, 1425, 2027
DraI	TTTAAA	2 cut(s)	1510, 1573
DrdI	GACNNNNNNGTC	2 cut(s)	443, 1685
DriI	GACNNNNNGTC	2 cut(s)	571, 1633
DseDI	GACNNNNNNGTC	2 cut(s)	443, 1685
EaeI	YGGCCR	4 cut(s)	657, 1226, 1284, 1338
Eam1104I	CTCTTC	4 cut(s)	2, 644, 702, 906
Eam1105I	GACNNNNNGTC	2 cut(s)	571, 1633
EarI	CTCTTC	4 cut(s)	2, 644, 702, 906
Ecl136II	GAGCTC	1 cut(s)	1825
Eco130I	CCWWGG	3 cut(s)	183, 1183, 1397
Eco24I	GRGCYC	1 cut(s)	1827
Eco31I	GGTCTC	1 cut(s)	2140
Eco32I	GATATC	2 cut(s)	817, 1351
Eco47I	GGWCC	5 cut(s)	69, 187, 917, 1537, 1831
Eco53kI	GAGCTC	1 cut(s)	1825
Eco57I	CTGAAG	1 cut(s)	887
EcoICRI	GAGCTC	1 cut(s)	1825
EcoO109I	RGGNCCY	2 cut(s)	187, 917
EcoRII	CCWGG	5 cut(s)	190, 1090, 1286, 1417, 1539
EcoRV	GATATC	2 cut(s)	817, 1351
EcoT14I	CCWWGG	3 cut(s)	183, 1183, 1397
EcoT38I	GRGCYC	1 cut(s)	1827
EgeI	GGCGCC	1 cut(s)	297
EheI	GGCGCC	1 cut(s)	297
ErhI	CCWWGG	3 cut(s)	183, 1183, 1397
FaeI	CATG	8 cut(s)	268, 1001, 1111, 1529, 1592, 1678, 1684, 1831
FalI	AAGNNNNNCTT	2 cut(s)	638, 670
FaqI	GGGAC	3 cut(s)	55, 1744, 2204
FatI	CATG	8 cut(s)	264, 997, 1107, 1525, 1588, 1674, 1680, 1827
FauI	CCCGC	2 cut(s)	466, 2180
FbaI	TGATCA	1 cut(s)	1042
FblI	GTMKAC	1 cut(s)	1020
FriOI	GRGCYC	1 cut(s)	1827
FspBI	CTAG	6 cut(s)	945, 1151, 2022, 2133, 2304, 2316
GlaI	GCGC	4 cut(s)	81, 297, 957, 2333
GsaI	CCCAGC	1 cut(s)	76
GsuI	CTGGAG	1 cut(s)	2289
HaeII	RGCGCY	3 cut(s)	83, 299, 2335
HaeIII	GGCC	9 cut(s)	377, 404, 464, 659, 691, 977, 1228, 1286, 1340
HapII	CCGG	1 cut(s)	896
HgaI	GACGC	4 cut(s)	266, 400, 406, 657
HhaI	GCGC	4 cut(s)	82, 298, 958, 2334
Hin1I	GRCGYC	1 cut(s)	296
Hin1II	CATG	8 cut(s)	268, 1001, 1111, 1529, 1592, 1678, 1684, 1831
Hin6I	GCGC	4 cut(s)	80, 296, 956, 2332
HinP1I	GCGC	4 cut(s)	80, 296, 956, 2332
HindIII	AAGCTT	1 cut(s)	1037
HpaII	CCGG	1 cut(s)	896
HphI	GGTGA	7 cut(s)	242, 298, 1337, 1448, 1541, 1730, 1787
Hpy166II	GTNNAC	6 cut(s)	116, 880, 938, 1021, 1654, 2248
Hpy8I	GTNNAC	6 cut(s)	116, 880, 938, 1021, 1654, 2248
Hpy99I	CGWCG	7 cut(s)	109, 112, 170, 215, 440, 470, 2328
HpyCH4III	ACNGT	5 cut(s)	780, 1025, 1321, 1767, 2221
HpyCH4IV	ACGT	6 cut(s)	96, 387, 1006, 1686, 1867, 2323
HpySE526I	ACGT	6 cut(s)	96, 387, 1006, 1686, 1867, 2323
Hsp92I	GRCGYC	1 cut(s)	296
Hsp92II	CATG	8 cut(s)	268, 1001, 1111, 1529, 1592, 1678, 1684, 1831
HspAI	GCGC	4 cut(s)	80, 296, 956, 2332
KasI	GGCGCC	1 cut(s)	295
Ksp22I	TGATCA	1 cut(s)	1042
Kzo9I	GATC	9 cut(s)	352, 550, 561, 889, 1042, 1168, 1303, 1425, 2027
LguI	GCTCTTC	1 cut(s)	644
LmnI	GCTCC	3 cut(s)	1822, 2183, 2236
Lsp1109I	GCAGC	9 cut(s)	442, 554, 866, 1453, 1600, 1786, 2020, 2077, 2080
LweI	GCATC	6 cut(s)	400, 460, 1122, 1372, 1553, 2105
MaeI	CTAG	6 cut(s)	945, 1151, 2022, 2133, 2304, 2316
MaeII	ACGT	6 cut(s)	96, 387, 1006, 1686, 1867, 2323
MaeIII	GTNAC	9 cut(s)	388, 414, 1315, 1413, 1513, 1529, 2038, 2123, 2221
MalI	GATC	9 cut(s)	354, 552, 563, 891, 1044, 1170, 1305, 1427, 2029
MbiI	CCGCTC	1 cut(s)	67
MboI	GATC	9 cut(s)	352, 550, 561, 889, 1042, 1168, 1303, 1425, 2027
MboII	GAAGA	7 cut(s)	19, 149, 661, 714, 719, 923, 2247
MhlI	GDGCHC	2 cut(s)	940, 1827
MlsI	TGGCCA	3 cut(s)	659, 1286, 1340
MluI	ACGCGT	1 cut(s)	258
MluNI	TGGCCA	3 cut(s)	659, 1286, 1340
Mly113I	GGCGCC	1 cut(s)	296
MlyI	GAGTC	3 cut(s)	425, 581, 614
MmeI	TCCRAC	3 cut(s)	459, 462, 2306
Mox20I	TGGCCA	3 cut(s)	659, 1286, 1340
MscI	TGGCCA	3 cut(s)	659, 1286, 1340
MseI	TTAA	9 cut(s)	579, 696, 1059, 1113, 1509, 1572, 1641, 1785, 2156
MslI	CAYNNNNRTG	1 cut(s)	1679
Msp20I	TGGCCA	3 cut(s)	659, 1286, 1340
MspCI	CTTAAG	2 cut(s)	695, 1058
MspI	CCGG	1 cut(s)	896
MspR9I	CCNGG	5 cut(s)	192, 1092, 1288, 1419, 1541
Mva1269I	GAATGC	1 cut(s)	273
MvaI	CCWGG	5 cut(s)	192, 1092, 1288, 1419, 1541
MvnI	CGCG	2 cut(s)	112, 260
NarI	GGCGCC	1 cut(s)	296
NdeII	GATC	9 cut(s)	352, 550, 561, 889, 1042, 1168, 1303, 1425, 2027
NlaIII	CATG	8 cut(s)	268, 1001, 1111, 1529, 1592, 1678, 1684, 1831
NlaIV	GGNNCC	6 cut(s)	71, 181, 189, 297, 918, 2179
NmuCI	GTSAC	3 cut(s)	388, 1513, 1529
NspI	RCATGY	2 cut(s)	1111, 1684
NspV	TTCGAA	1 cut(s)	24
PciSI	GCTCTTC	1 cut(s)	644
PcsI	WCGNNNNNNNCGW	8 cut(s)	132, 141, 165, 171, 426, 435, 1231, 1948
PctI	GAATGC	1 cut(s)	273
PfeI	GAWTC	8 cut(s)	21, 491, 1222, 1294, 1484, 1854, 1871, 1991
PflMI	CCANNNNNTGG	1 cut(s)	886
Ple19I	CGATCG	1 cut(s)	564
PleI	GAGTC	3 cut(s)	425, 580, 613
PluTI	GGCGCC	1 cut(s)	299
PpsI	GAGTC	3 cut(s)	425, 580, 613
Ppu21I	YACGTR	2 cut(s)	97, 1007
PpuMI	RGGWCCY	2 cut(s)	187, 917
PsiI	TTATAA	1 cut(s)	1748
Psp124BI	GAGCTC	1 cut(s)	1827
Psp5II	RGGWCCY	2 cut(s)	187, 917
Psp6I	CCWGG	5 cut(s)	190, 1090, 1286, 1417, 1539
PspFI	CCCAGC	1 cut(s)	72
PspGI	CCWGG	5 cut(s)	190, 1090, 1286, 1417, 1539
PspN4I	GGNNCC	6 cut(s)	71, 181, 189, 297, 918, 2179
PspPI	GGNCC	6 cut(s)	69, 187, 375, 917, 1537, 1831
PspPPI	RGGWCCY	2 cut(s)	187, 917
PstI	CTGCAG	3 cut(s)	856, 1471, 2038
PvuI	CGATCG	1 cut(s)	564
RsaI	GTAC	5 cut(s)	332, 488, 644, 684, 1155
RsaNI	GTAC	5 cut(s)	331, 487, 643, 683, 1154
RseI	CAYNNNNRTG	1 cut(s)	1679
SacI	GAGCTC	1 cut(s)	1827
SapI	GCTCTTC	1 cut(s)	644
SaqAI	TTAA	9 cut(s)	579, 696, 1059, 1113, 1509, 1572, 1641, 1785, 2156
Sau3AI	GATC	9 cut(s)	352, 550, 561, 889, 1042, 1168, 1303, 1425, 2027
Sau96I	GGNCC	6 cut(s)	69, 187, 375, 917, 1537, 1831
ScaI	AGTACT	1 cut(s)	1155
SchI	GAGTC	3 cut(s)	425, 581, 614
ScrFI	CCNGG	5 cut(s)	192, 1092, 1288, 1419, 1541
SduI	GDGCHC	2 cut(s)	940, 1827
SfaNI	GCATC	6 cut(s)	400, 460, 1122, 1372, 1553, 2105
SfcI	CTRYAG	3 cut(s)	852, 1467, 2034
SfoI	GGCGCC	1 cut(s)	297
SfuI	TTCGAA	1 cut(s)	24
SinI	GGWCC	5 cut(s)	69, 187, 917, 1537, 1831
SmiI	ATTTAAAT	1 cut(s)	1573
SmiMI	CAYNNNNRTG	1 cut(s)	1679
SmlI	CTYRAG	3 cut(s)	695, 1058, 1406
SmoI	CTYRAG	3 cut(s)	695, 1058, 1406
SpeI	ACTAGT	1 cut(s)	2021
SspDI	GGCGCC	1 cut(s)	295
SspMI	CTAG	6 cut(s)	945, 1151, 2022, 2133, 2304, 2316
SstI	GAGCTC	1 cut(s)	1827
StyD4I	CCNGG	5 cut(s)	190, 1090, 1286, 1417, 1539
StyI	CCWWGG	3 cut(s)	183, 1183, 1397
SwaI	ATTTAAAT	1 cut(s)	1573
TaaI	ACNGT	5 cut(s)	780, 1025, 1321, 1767, 2221
TaiI	ACGT	6 cut(s)	99, 390, 1009, 1689, 1870, 2326
TaqII	GACCGA	1 cut(s)	1248
TatI	WGTACW	3 cut(s)	330, 642, 1153
TauI	GCSGC	6 cut(s)	301, 455, 1929, 1932, 1935, 1938
TfiI	GAWTC	8 cut(s)	21, 491, 1222, 1294, 1484, 1854, 1871, 1991
Tru1I	TTAA	9 cut(s)	579, 696, 1059, 1113, 1509, 1572, 1641, 1785, 2156
Tru9I	TTAA	9 cut(s)	579, 696, 1059, 1113, 1509, 1572, 1641, 1785, 2156
TscAI	CASTG	4 cut(s)	785, 1131, 1326, 1476
TseFI	GTSAC	3 cut(s)	388, 1513, 1529
TseI	GCWGC	9 cut(s)	455, 542, 854, 1466, 1613, 1799, 2033, 2090, 2093
Tsp45I	GTSAC	3 cut(s)	388, 1513, 1529
TspDTI	ATGAA	6 cut(s)	253, 255, 774, 1133, 1856, 1992
TspGWI	ACGGA	3 cut(s)	93, 653, 1835
TspRI	CASTG	4 cut(s)	785, 1131, 1326, 1476
Van91I	CCANNNNNTGG	1 cut(s)	886
Vha464I	CTTAAG	2 cut(s)	695, 1058
VneI	GTGCAC	1 cut(s)	936
VpaK11BI	GGWCC	5 cut(s)	69, 187, 917, 1537, 1831
XapI	RAATTY	3 cut(s)	14, 983, 1568
XbaI	TCTAGA	1 cut(s)	2303
XceI	RCATGY	2 cut(s)	1111, 1684
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1825
XmiI	GTMKAC	1 cut(s)	1020
XspI	CTAG	6 cut(s)	945, 1151, 2022, 2133, 2304, 2316
ZrmI	AGTACT	1 cut(s)	1155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.