Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0003007

Physical Location & Seq

Genomic Coordinates Reverse (-)

52096034 .. 52096357

Gene Structure 324 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG381700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGGAGGGGATTCACCAGGAGGTGAGATCAGCTCCGCCGCCCAAGCCGAAGGAGAAGGCCGACAAGTACCAGGACGATGATGAGGAGGATCATCTAGAGAGTTTCTTGAGGGCCAAGAAGGACGCCACGCTAACTCTGGCCTCCGATGCGCTCCACGCCTGCTATGATTCCAACGAGGAGATCTATGCCGCTGCCAAGGTTGTGGATGCCGGAATATTGGAGTATGATTCCGATGACAATCCCGTTGTTGTGGACAGGATGAAGATCGAGCCAATGTCAGCTCTGGATCATACTTCCATTGACTACGAGCCGGCGATTAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

107

Amino Acids

12.0

Weight (kDa)

4.43

Isoelectric Point (pI)

57.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003007)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47330
fragaria_vesca	FvH4_1g27100 FvH4_1g27100 FvH4_1g27100
malus_domestica	MD00G1118300.v1.1 MD00G1118400.v1.1 MD09G1283400.v1.1 MD17G1274100.v1.1 MD17G1274800.v1.1 MD17G1275300.v1.1 MD17G1276500.v1.1
prunus_persica	Prupe.3G010900_v2.0.a1 Prupe.3G010900_v2.0.a1 Prupe.3G010900_v2.0.a1 Prupe.3G010900_v2.0.a1 Prupe.3G010900_v2.0.a1
pyrus_communis	pycom09g19130 pycom09g19140 pycom17g27210 pycom17g27330
rosa_chinensis	RchiOBHm_Chr3g0487421
rosa_laevigata	RLG00000023004
rosa_multiflora	Rmu_sc0008232.1_g000009 Rmu_sc0022533.1_g000001 Rmu_sc0031316.1_g000001
rosa_roxburghii	Rroxscaffold_6G00394790
rosa_rugosa	Rorug03G0234000
rosa_samantha	Rh2AG395100 Rh2CG381700 Rh3AG282000 Rh3BG317600 Rh3CG315700 Rh3DG313600 Rh4CG235900 Rh7AG337700 Rh7AG476200 Rh7CG355800
rosa_wichuraiana	Rw3G024970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	35, 38, 189
AclWI	GGATC	2 cut(s)	96, 294
AcyI	GRCGYC	1 cut(s)	123
AfaI	GTAC	1 cut(s)	68
AjnI	CCWGG	2 cut(s)	15, 69
AluBI	AGCT	2 cut(s)	32, 281
AluI	AGCT	2 cut(s)	32, 281
AlwI	GGATC	2 cut(s)	96, 294
AoxI	GGCC	3 cut(s)	57, 111, 138
ApeKI	GCWGC	1 cut(s)	191
AspLEI	GCGC	1 cut(s)	151
AspS9I	GGNCC	1 cut(s)	111
AsuHPI	GGTGA	2 cut(s)	5, 34
BbvI	GCAGC	1 cut(s)	178
BciT130I	CCWGG	2 cut(s)	17, 71
BfaI	CTAG	1 cut(s)	95
BglII	AGATCT	1 cut(s)	180
BisI	GCNGC	3 cut(s)	38, 189, 192
BlsI	GCNGC	3 cut(s)	39, 190, 193
Bme1390I	CCNGG	2 cut(s)	17, 71
BmgT120I	GGNCC	1 cut(s)	111
BmrFI	CCNGG	2 cut(s)	17, 71
BmsI	GCATC	2 cut(s)	136, 196
BplI	GAGNNNNNCTC	2 cut(s)	16, 48
BpuEI	CTTGAG	1 cut(s)	127
BsaBI	GATNNNNATC	2 cut(s)	237, 263
BsaHI	GRCGYC	1 cut(s)	123
BsaJI	CCNNGG	1 cut(s)	195
Bse118I	RCCGGY	1 cut(s)	310
Bse8I	GATNNNNATC	2 cut(s)	237, 263
BseBI	CCWGG	2 cut(s)	17, 71
BseDI	CCNNGG	1 cut(s)	195
BseGI	GGATG	2 cut(s)	211, 264
BseJI	GATNNNNATC	2 cut(s)	237, 263
BseRI	GAGGAG	2 cut(s)	98, 191
BseXI	GCAGC	1 cut(s)	178
BshFI	GGCC	3 cut(s)	59, 113, 140
BsiSI	CCGG	2 cut(s)	210, 311
BsnI	GGCC	3 cut(s)	59, 113, 140
Bsp143I	GATC	5 cut(s)	26, 88, 180, 264, 286
BspACI	CCGC	3 cut(s)	35, 38, 189
BspANI	GGCC	3 cut(s)	59, 113, 140
BspPI	GGATC	2 cut(s)	96, 294
BsrFI	RCCGGY	1 cut(s)	310
BssAI	RCCGGY	1 cut(s)	310
BssECI	CCNNGG	1 cut(s)	195
BssMI	GATC	5 cut(s)	26, 88, 180, 264, 286
BssNI	GRCGYC	1 cut(s)	123
BssT1I	CCWWGG	1 cut(s)	195
Bst2UI	CCWGG	2 cut(s)	17, 71
BstACI	GRCGYC	1 cut(s)	123
BstC8I	GCNNGC	2 cut(s)	160, 312
BstF5I	GGATG	2 cut(s)	211, 264
BstHHI	GCGC	1 cut(s)	151
BstKTI	GATC	5 cut(s)	29, 91, 183, 267, 289
BstMBI	GATC	5 cut(s)	26, 88, 180, 264, 286
BstMWI	GCNNNNNNNGC	3 cut(s)	43, 146, 155
BstNI	CCWGG	2 cut(s)	17, 71
BstSCI	CCNGG	2 cut(s)	15, 69
BstV1I	GCAGC	1 cut(s)	178
BstX2I	RGATCY	1 cut(s)	180
BstXI	CCANNNNNNTGG	1 cut(s)	202
BstYI	RGATCY	1 cut(s)	180
BsuRI	GGCC	3 cut(s)	59, 113, 140
BtsCI	GGATG	2 cut(s)	211, 264
Cac8I	GCNNGC	2 cut(s)	160, 312
CfoI	GCGC	1 cut(s)	151
Cfr10I	RCCGGY	1 cut(s)	310
Cfr13I	GGNCC	1 cut(s)	111
CseI	GACGC	1 cut(s)	131
Csp6I	GTAC	1 cut(s)	67
CviJI	RGCY	8 cut(s)	32, 46, 59, 113, 140, 271, 281, 310
CviKI_1	RGCY	8 cut(s)	32, 46, 59, 113, 140, 271, 281, 310
CviQI	GTAC	1 cut(s)	67
DpnI	GATC	5 cut(s)	28, 90, 182, 266, 288
DpnII	GATC	5 cut(s)	26, 88, 180, 264, 286
EciI	GGCGGA	1 cut(s)	24
Eco130I	CCWWGG	1 cut(s)	195
EcoRII	CCWGG	2 cut(s)	15, 69
EcoT14I	CCWWGG	1 cut(s)	195
ErhI	CCWWGG	1 cut(s)	195
FaiI	YATR	4 cut(s)	165, 186, 225, 291
Fnu4HI	GCNGC	3 cut(s)	38, 189, 192
FokI	GGATG	2 cut(s)	218, 271
Fsp4HI	GCNGC	3 cut(s)	38, 189, 192
FspBI	CTAG	1 cut(s)	95
GlaI	GCGC	1 cut(s)	150
GluI	GCNGC	3 cut(s)	38, 189, 192
HaeIII	GGCC	3 cut(s)	59, 113, 140
HapII	CCGG	2 cut(s)	210, 311
HgaI	GACGC	1 cut(s)	131
HhaI	GCGC	1 cut(s)	151
Hin1I	GRCGYC	1 cut(s)	123
Hin6I	GCGC	1 cut(s)	149
HinP1I	GCGC	1 cut(s)	149
HinfI	GANTC	3 cut(s)	10, 167, 227
HpaII	CCGG	2 cut(s)	210, 311
HphI	GGTGA	2 cut(s)	5, 34
Hpy166II	GTNNAC	1 cut(s)	253
Hpy188I	TCNGA	2 cut(s)	145, 232
Hpy188III	TCNNGA	3 cut(s)	95, 106, 284
Hpy8I	GTNNAC	1 cut(s)	253
HpyAV	CCTTC	3 cut(s)	43, 49, 112
HpyF10VI	GCNNNNNNNGC	3 cut(s)	43, 146, 155
Hsp92I	GRCGYC	1 cut(s)	123
HspAI	GCGC	1 cut(s)	149
KroI	GCCGGC	1 cut(s)	310
KroNI	GCCGGC	1 cut(s)	312
Kzo9I	GATC	5 cut(s)	26, 88, 180, 264, 286
LmnI	GCTCC	2 cut(s)	37, 156
LpnPI	CCDG	9 cut(s)	2, 29, 56, 83, 122, 172, 223, 241, 269
Lsp1109I	GCAGC	1 cut(s)	178
LweI	GCATC	2 cut(s)	136, 196
MaeI	CTAG	1 cut(s)	95
MalI	GATC	5 cut(s)	28, 90, 182, 266, 288
MboI	GATC	5 cut(s)	26, 88, 180, 264, 286
MboII	GAAGA	1 cut(s)	274
MflI	RGATCY	1 cut(s)	180
MmeI	TCCRAC	1 cut(s)	195
MnlI	CCTC	6 cut(s)	13, 76, 79, 102, 151, 169
MroNI	GCCGGC	1 cut(s)	310
MspA1I	CMGCKG	1 cut(s)	191
MspI	CCGG	2 cut(s)	210, 311
MspR9I	CCNGG	2 cut(s)	17, 71
MvaI	CCWGG	2 cut(s)	17, 71
MwoI	GCNNNNNNNGC	3 cut(s)	43, 146, 155
NaeI	GCCGGC	1 cut(s)	312
NdeII	GATC	5 cut(s)	26, 88, 180, 264, 286
NgoMIV	GCCGGC	1 cut(s)	310
PdiI	GCCGGC	1 cut(s)	312
PfeI	GAWTC	3 cut(s)	10, 167, 227
PkrI	GCNGC	3 cut(s)	39, 190, 193
Psp6I	CCWGG	2 cut(s)	15, 69
PspGI	CCWGG	2 cut(s)	15, 69
PspPI	GGNCC	1 cut(s)	111
PsuI	RGATCY	1 cut(s)	180
RsaI	GTAC	1 cut(s)	68
RsaNI	GTAC	1 cut(s)	67
SatI	GCNGC	3 cut(s)	38, 189, 192
Sau3AI	GATC	5 cut(s)	26, 88, 180, 264, 286
Sau96I	GGNCC	1 cut(s)	111
ScrFI	CCNGG	2 cut(s)	17, 71
SetI	ASST	5 cut(s)	24, 34, 201, 283, 323
SfaNI	GCATC	2 cut(s)	136, 196
SmlI	CTYRAG	1 cut(s)	106
SmoI	CTYRAG	1 cut(s)	106
SsiI	CCGC	3 cut(s)	35, 38, 189
SspI	AATATT	1 cut(s)	216
SspMI	CTAG	1 cut(s)	95
StyD4I	CCNGG	2 cut(s)	15, 69
StyI	CCWWGG	1 cut(s)	195
TaqI	TCGA	1 cut(s)	267
TauI	GCSGC	2 cut(s)	40, 191
TfiI	GAWTC	3 cut(s)	10, 167, 227
TseI	GCWGC	1 cut(s)	191
TspDTI	ATGAA	1 cut(s)	275
XbaI	TCTAGA	1 cut(s)	94
XcmI	CCANNNNNNNNNTGG	1 cut(s)	133
XspI	CTAG	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.