Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0022533.1

Orthogroup ID

OG0003007

Physical Location & Seq

Genomic Coordinates Forward (+)

146 .. 3196

Gene Structure 3051 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0022533.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1737 bp

atgagtgagcaggatgttgccgagtaccggaagagcttggccatccgagtgtctggctttgatgtaccaaggccaattaagatatttgatgactgtgcgttttctccgcaactcatgaatgcaattaaaaaacaagagtatgaaaagcctacaccaatacagtgccaagctttacccatagttctctctgggagggatatcattggtatagcaaaaactggctccggaaagactgccgcctttgtacttcccatgatttgccatattatggatcagccagaacttcagaaagaagaaggtcccataggagtcatatgtgcacctaccagagaactggcgcaacaaatacacttagaggccaagaaatttgctaaatcacatggcatccgtgtctgcgctgtatatggtgggatgtcgaagcttgatcagttcaaagaacttaaggcaggatgtgagatagttgtagctactcctgggagattgatagacatgattaaaatgaaggcactgacgatgctacgtgtaacttacctagtgcttgatgaggctgatcggatgtttgaccttggttttgagcctcaaattaggtctatagttggtcagattaggccagaccggcaaacgctactcttttctgctacaatgccacgtaaagttgaaaagctggctagagaaattctttctgaccctgtaagagttacagtgggtgaggtgggaatggccaatgaggatatcactcaagttgttcatgtacttccttctgaagctgagaaattgccgtggcttcttgaaagattacctggtatgattgatgatggtgatgttctcgtatttgcttctaaaaaagctgcagtggatgagatcgaaacacagctttctcagaaaggttttaaagttgcagctattcatggtgataaggaccaggctactaggatggatattatgcaaaaatataaatctggcatctaccatgttctgattgcaactgatgttgctgctcgtggtcttaacatcaagtcaattaagtcagttgtgaactttgatattgcaaaggacatggacatgcatgttcatcgtattggtagaacaggtcgtgccggtgataaagatgggactgcatacactcttatcacgcataaagaggcacggtttgctggagaattggttaatagcttagttggtgctggtcagaatgttcccgcggagctcatggaccttgcaatgaaggatggaagattcaggtctaaacgtgattcaagaaaaggaggtggaaagaagggtagggggagaggtggtggtggaggcggtggcggcagtggtcgaggtgtgcgcggggtggattttggtctgggtattggatataatccggaatccaatagttctccatcacctgctgttactagtcgatctgccgcagttacttctctaagaacaggaatgatgtctcaattcaagagtaagtttgtttctgcttcatcaaactctccaagtcagggttctggtaacagttcgagtgcgcatgccaacaagaggcctgcattacgaggatttgtagccggtggttctattggtggagacatacatagatctcagacaaccaatacagtttctccagctcctgcaccagtggcaaacatatcttctcagaattctggagaaaattcgagccagaagccgacggaaagttctagagataaacctagagaaaggcggaggcgctctggttgggactgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

578

Amino Acids

62.4

Weight (kDa)

9.53

Isoelectric Point (pI)

44.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003007)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47330
fragaria_vesca	FvH4_1g27100 FvH4_1g27100 FvH4_1g27100
malus_domestica	MD00G1118300.v1.1 MD00G1118400.v1.1 MD09G1283400.v1.1 MD17G1274100.v1.1 MD17G1274800.v1.1 MD17G1275300.v1.1 MD17G1276500.v1.1
prunus_persica	Prupe.3G010900_v2.0.a1 Prupe.3G010900_v2.0.a1 Prupe.3G010900_v2.0.a1 Prupe.3G010900_v2.0.a1 Prupe.3G010900_v2.0.a1
pyrus_communis	pycom09g19130 pycom09g19140 pycom17g27210 pycom17g27330
rosa_chinensis	RchiOBHm_Chr3g0487421
rosa_laevigata	RLG00000023004
rosa_multiflora	Rmu_sc0008232.1_g000009 Rmu_sc0022533.1_g000001 Rmu_sc0031316.1_g000001
rosa_roxburghii	Rroxscaffold_6G00394790
rosa_rugosa	Rorug03G0234000
rosa_samantha	Rh2AG395100 Rh2CG381700 Rh3AG282000 Rh3BG317600 Rh3CG315700 Rh3DG313600 Rh4CG235900 Rh7AG337700 Rh7AG476200 Rh7CG355800
rosa_wichuraiana	Rw3G024970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1399
Acc16I	TGCGCA	1 cut(s)	1518
Acc36I	ACCTGC	1 cut(s)	1399
AccB7I	CCANNNNNTGG	1 cut(s)	268
AccII	CGCG	2 cut(s)	1202, 1332
AccIII	TCCGGA	2 cut(s)	224, 1366
AciI	CCGC	9 cut(s)	107, 237, 1200, 1202, 1305, 1311, 1332, 1413, 1711
AclWI	GGATC	1 cut(s)	279
AcoI	YGGCCR	2 cut(s)	39, 720
AcsI	RAATTY	4 cut(s)	365, 675, 1648, 1660
AcuI	CTGAAG	2 cut(s)	269, 783
AfaI	GTAC	4 cut(s)	26, 66, 246, 753
AfiI	CCNNNNNNNGG	4 cut(s)	27, 268, 1493, 1530
AflII	CTTAAG	1 cut(s)	440
AflIII	ACRYGT	1 cut(s)	520
AgsI	TTSAA	5 cut(s)	433, 659, 791, 1257, 1453
AhlI	ACTAGT	1 cut(s)	1400
AjnI	CCWGG	3 cut(s)	472, 799, 921
AjuI	GAANNNNNNNTTGG	2 cut(s)	1480, 1512
Alw21I	GWGCWC	2 cut(s)	322, 1209
Alw26I	GTCTC	2 cut(s)	1449, 1569
Alw44I	GTGCAC	1 cut(s)	318
AlwI	GGATC	1 cut(s)	279
AlwNI	CAGNNNCTG	1 cut(s)	1619
Aor13HI	TCCGGA	2 cut(s)	224, 1366
AoxI	GGCC	6 cut(s)	39, 71, 357, 608, 720, 1532
ApaLI	GTGCAC	1 cut(s)	318
ApeKI	GCWGC	3 cut(s)	848, 899, 995
ApoI	RAATTY	4 cut(s)	365, 675, 1648, 1660
ArsI	GACNNNNNNTTYG	2 cut(s)	554, 586
AspLEI	GCGC	5 cut(s)	340, 398, 1332, 1519, 1719
AspS9I	GGNCC	3 cut(s)	299, 919, 1213
AsuHPI	GGTGA	5 cut(s)	719, 830, 923, 1112, 1380
AvaII	GGWCC	3 cut(s)	299, 919, 1213
BaeGI	GKGCMC	1 cut(s)	322
BalI	TGGCCA	2 cut(s)	41, 722
BanII	GRGCYC	1 cut(s)	1209
BauI	CACGAG	1 cut(s)	999
Bbv12I	GWGCWC	2 cut(s)	322, 1209
BbvI	GCAGC	3 cut(s)	835, 911, 982
BccI	CCATC	6 cut(s)	50, 809, 928, 1103, 1223, 1393
BceAI	ACGGC	1 cut(s)	763
BcgI	CGANNNNNNTGC	2 cut(s)	1055, 1089
BciT130I	CCWGG	3 cut(s)	474, 801, 923
BclI	TGATCA	1 cut(s)	424
BcoDI	GTCTC	2 cut(s)	1449, 1569
BcuI	ACTAGT	1 cut(s)	1400
BfaI	CTAG	6 cut(s)	533, 669, 930, 1401, 1689, 1701
BfmI	CTRYAG	2 cut(s)	591, 849
BfoI	RGCGCY	1 cut(s)	1720
BfrI	CTTAAG	1 cut(s)	440
BfuAI	ACCTGC	1 cut(s)	1399
BglI	GCCNNNNNGGC	1 cut(s)	616
BglII	AGATCT	1 cut(s)	1586
BisI	GCNGC	6 cut(s)	237, 849, 900, 996, 1312, 1413
BlsI	GCNGC	6 cut(s)	238, 850, 901, 997, 1313, 1414
Bme1390I	CCNGG	3 cut(s)	474, 801, 923
Bme18I	GGWCC	3 cut(s)	299, 919, 1213
BmgT120I	GGNCC	3 cut(s)	299, 919, 1213
BmiI	GGNNCC	2 cut(s)	223, 301
BmrFI	CCNGG	3 cut(s)	474, 801, 923
BmsI	GCATC	3 cut(s)	393, 504, 972
BpmI	CTGGAG	3 cut(s)	1176, 1596, 1674
BpuEI	CTTGAG	1 cut(s)	723
BsaAI	YACGTR	2 cut(s)	521, 650
BsaJI	CCNNGG	5 cut(s)	68, 473, 565, 779, 1200
BsaWI	WCCGGW	3 cut(s)	27, 224, 1366
BsaXI	ACNNNNNCTCC	6 cut(s)	1149, 1179, 1279, 1309, 1594, 1624
Bsc4I	CCNNNNNNNGG	4 cut(s)	27, 268, 1493, 1530
Bse118I	RCCGGY	3 cut(s)	615, 1097, 1556
Bse1I	ACTGG	3 cut(s)	223, 339, 1625
Bse3DI	GCAATG	1 cut(s)	1227
BseAI	TCCGGA	2 cut(s)	224, 1366
BseBI	CCWGG	3 cut(s)	474, 801, 923
BseDI	CCNNGG	5 cut(s)	68, 473, 565, 779, 1200
BseGI	GGATG	9 cut(s)	19, 42, 384, 417, 455, 561, 862, 939, 1234
BseLI	CCNNNNNNNGG	4 cut(s)	27, 268, 1493, 1530
BseMI	GCAATG	1 cut(s)	1227
BseMII	CTCAG	4 cut(s)	759, 893, 1604, 1658
BseNI	ACTGG	3 cut(s)	223, 339, 1625
BseSI	GKGCMC	1 cut(s)	322
BseXI	GCAGC	3 cut(s)	835, 911, 982
BsgI	GTGCAG	1 cut(s)	1605
Bsh1236I	CGCG	2 cut(s)	1202, 1332
BshFI	GGCC	6 cut(s)	41, 73, 359, 610, 722, 1534
BsiHKAI	GWGCWC	2 cut(s)	322, 1209
BsiSI	CCGG	6 cut(s)	28, 225, 616, 1098, 1367, 1557
BslFI	GGGAC	2 cut(s)	285, 1126
BslI	CCNNNNNNNGG	4 cut(s)	27, 268, 1493, 1530
BsmAI	GTCTC	2 cut(s)	1449, 1569
BsmFI	GGGAC	2 cut(s)	285, 1126
BsmI	GAATGC	1 cut(s)	124
BsnI	GGCC	6 cut(s)	41, 73, 359, 610, 722, 1534
Bsp1286I	GDGCHC	2 cut(s)	322, 1209
Bsp13I	TCCGGA	2 cut(s)	224, 1366
Bsp143I	GATC	6 cut(s)	271, 424, 550, 861, 1406, 1586
BspACI	CCGC	9 cut(s)	107, 237, 1200, 1202, 1305, 1311, 1332, 1413, 1711
BspANI	GGCC	6 cut(s)	41, 73, 359, 610, 722, 1534
BspCNI	CTCAG	4 cut(s)	760, 892, 1603, 1657
BspEI	TCCGGA	2 cut(s)	224, 1366
BspFNI	CGCG	2 cut(s)	1202, 1332
BspHI	TCATGA	1 cut(s)	114
BspLI	GGNNCC	2 cut(s)	223, 301
BspMAI	CTGCAG	1 cut(s)	853
BspMI	ACCTGC	1 cut(s)	1399
BspPI	GGATC	1 cut(s)	279
BspQI	GCTCTTC	1 cut(s)	26
BspTI	CTTAAG	1 cut(s)	440
BsrDI	GCAATG	1 cut(s)	1227
BsrFI	RCCGGY	3 cut(s)	615, 1097, 1556
BsrI	ACTGG	3 cut(s)	223, 339, 1625
BssAI	RCCGGY	3 cut(s)	615, 1097, 1556
BssECI	CCNNGG	5 cut(s)	68, 473, 565, 779, 1200
BssMI	GATC	6 cut(s)	271, 424, 550, 861, 1406, 1586
BssSI	CACGAG	1 cut(s)	999
BssT1I	CCWWGG	2 cut(s)	68, 565
Bst2BI	CACGAG	1 cut(s)	999
Bst2UI	CCWGG	3 cut(s)	474, 801, 923
Bst4CI	ACNGT	7 cut(s)	95, 162, 703, 1149, 1508, 1606, 1733
Bst6I	CTCTTC	1 cut(s)	26
BstAFI	CTTAAG	1 cut(s)	440
BstAPI	GCANNNNNTGC	1 cut(s)	1151
BstBAI	YACGTR	2 cut(s)	521, 650
BstC8I	GCNNGC	3 cut(s)	666, 1521, 1536
BstDEI	CTNAG	7 cut(s)	352, 768, 879, 1174, 1427, 1590, 1644
BstDSI	CCRYGG	2 cut(s)	779, 1200
BstF5I	GGATG	9 cut(s)	19, 42, 384, 417, 455, 561, 862, 939, 1234
BstFNI	CGCG	2 cut(s)	1202, 1332
BstH2I	RGCGCY	1 cut(s)	1720
BstHHI	GCGC	5 cut(s)	340, 398, 1332, 1519, 1719
BstKTI	GATC	6 cut(s)	274, 427, 553, 864, 1409, 1589
BstMAI	GTCTC	2 cut(s)	1449, 1569
BstMBI	GATC	6 cut(s)	271, 424, 550, 861, 1406, 1586
BstMWI	GCNNNNNNNGC	4 cut(s)	616, 1151, 1311, 1628
BstNI	CCWGG	3 cut(s)	474, 801, 923
BstNSI	RCATGY	3 cut(s)	1066, 1070, 1523
BstSCI	CCNGG	3 cut(s)	472, 799, 921
BstSFI	CTRYAG	2 cut(s)	591, 849
BstSLI	GKGCMC	1 cut(s)	322
BstUI	CGCG	2 cut(s)	1202, 1332
BstV1I	GCAGC	3 cut(s)	835, 911, 982
BstX2I	RGATCY	1 cut(s)	1586
BstXI	CCANNNNNNTGG	1 cut(s)	334
BstYI	RGATCY	1 cut(s)	1586
BsuRI	GGCC	6 cut(s)	41, 73, 359, 610, 722, 1534
BtgI	CCRYGG	2 cut(s)	779, 1200
BtsCI	GGATG	9 cut(s)	19, 42, 384, 417, 455, 561, 862, 939, 1234
BtsI	GCAGTG	2 cut(s)	858, 1321
BtsIMutI	CAGTG	6 cut(s)	167, 506, 708, 858, 1321, 1632
BveI	ACCTGC	1 cut(s)	1399
Cac8I	GCNNGC	3 cut(s)	666, 1521, 1536
CaiI	CAGNNNCTG	1 cut(s)	1619
CciI	TCATGA	1 cut(s)	114
CfoI	GCGC	5 cut(s)	340, 398, 1332, 1519, 1719
Cfr10I	RCCGGY	3 cut(s)	615, 1097, 1556
Cfr13I	GGNCC	3 cut(s)	299, 919, 1213
Cfr42I	CCGCGG	1 cut(s)	1203
CsiI	ACCWGGT	1 cut(s)	799
Csp6I	GTAC	4 cut(s)	25, 65, 245, 752
CviQI	GTAC	4 cut(s)	25, 65, 245, 752
DdeI	CTNAG	7 cut(s)	352, 768, 879, 1174, 1427, 1590, 1644
DpnI	GATC	6 cut(s)	273, 426, 552, 863, 1408, 1588
DpnII	GATC	6 cut(s)	271, 424, 550, 861, 1406, 1586
DraI	TTTAAA	1 cut(s)	892
EaeI	YGGCCR	2 cut(s)	39, 720
Eam1104I	CTCTTC	1 cut(s)	26
EarI	CTCTTC	1 cut(s)	26
EciI	GGCGGA	1 cut(s)	1726
Ecl136II	GAGCTC	1 cut(s)	1207
Eco130I	CCWWGG	2 cut(s)	68, 565
Eco147I	AGGCCT	1 cut(s)	1534
Eco24I	GRGCYC	1 cut(s)	1209
Eco32I	GATATC	2 cut(s)	199, 733
Eco47I	GGWCC	3 cut(s)	299, 919, 1213
Eco53kI	GAGCTC	1 cut(s)	1207
Eco57I	CTGAAG	2 cut(s)	269, 783
EcoICRI	GAGCTC	1 cut(s)	1207
EcoO109I	RGGNCCY	1 cut(s)	299
EcoRI	GAATTC	1 cut(s)	1648
EcoRII	CCWGG	3 cut(s)	472, 799, 921
EcoRV	GATATC	2 cut(s)	199, 733
EcoT14I	CCWWGG	2 cut(s)	68, 565
EcoT22I	ATGCAT	1 cut(s)	1068
EcoT38I	GRGCYC	1 cut(s)	1209
ErhI	CCWWGG	2 cut(s)	68, 565
FaqI	GGGAC	2 cut(s)	285, 1126
FauI	CCCGC	2 cut(s)	1207, 1325
FauNDI	CATATG	1 cut(s)	314
FbaI	TGATCA	1 cut(s)	424
Fnu4HI	GCNGC	6 cut(s)	237, 849, 900, 996, 1312, 1413
FokI	GGATG	9 cut(s)	26, 29, 371, 424, 462, 568, 869, 946, 1241
FriOI	GRGCYC	1 cut(s)	1209
Fsp4HI	GCNGC	6 cut(s)	237, 849, 900, 996, 1312, 1413
FspAI	RTGCGCAY	1 cut(s)	1518
FspBI	CTAG	6 cut(s)	533, 669, 930, 1401, 1689, 1701
FspI	TGCGCA	1 cut(s)	1518
GlaI	GCGC	5 cut(s)	339, 397, 1331, 1518, 1718
GluI	GCNGC	6 cut(s)	237, 849, 900, 996, 1312, 1413
GsuI	CTGGAG	3 cut(s)	1176, 1596, 1674
HaeII	RGCGCY	1 cut(s)	1720
HaeIII	GGCC	6 cut(s)	41, 73, 359, 610, 722, 1534
HapII	CCGG	6 cut(s)	28, 225, 616, 1098, 1367, 1557
HhaI	GCGC	5 cut(s)	340, 398, 1332, 1519, 1719
Hin6I	GCGC	5 cut(s)	338, 396, 1330, 1517, 1717
HinP1I	GCGC	5 cut(s)	338, 396, 1330, 1517, 1717
HindIII	AAGCTT	2 cut(s)	168, 419
HinfI	GANTC	4 cut(s)	309, 1236, 1253, 1370
HpaII	CCGG	6 cut(s)	28, 225, 616, 1098, 1367, 1557
HphI	GGTGA	5 cut(s)	719, 830, 923, 1112, 1380
Hpy166II	GTNNAC	2 cut(s)	320, 1036
Hpy188III	TCNNGA	8 cut(s)	115, 225, 788, 1257, 1367, 1453, 1653, 1689
Hpy8I	GTNNAC	2 cut(s)	320, 1036
Hpy99I	CGWCG	1 cut(s)	1681
HpyAV	CCTTC	5 cut(s)	290, 496, 768, 1219, 1270
HpyCH4III	ACNGT	7 cut(s)	95, 162, 703, 1149, 1508, 1606, 1733
HpyCH4IV	ACGT	3 cut(s)	520, 649, 1249
HpyF10VI	GCNNNNNNNGC	4 cut(s)	616, 1151, 1311, 1628
HpyF3I	CTNAG	7 cut(s)	352, 768, 879, 1174, 1427, 1590, 1644
HpySE526I	ACGT	3 cut(s)	520, 649, 1249
HspAI	GCGC	5 cut(s)	338, 396, 1330, 1517, 1717
Kpn2I	TCCGGA	2 cut(s)	224, 1366
Ksp22I	TGATCA	1 cut(s)	424
KspI	CCGCGG	1 cut(s)	1203
Kzo9I	GATC	6 cut(s)	271, 424, 550, 861, 1406, 1586
LguI	GCTCTTC	1 cut(s)	26
LmnI	GCTCC	3 cut(s)	227, 1204, 1621
Lsp1109I	GCAGC	3 cut(s)	835, 911, 982
LweI	GCATC	3 cut(s)	393, 504, 972
MabI	ACCWGGT	1 cut(s)	799
MaeI	CTAG	6 cut(s)	533, 669, 930, 1401, 1689, 1701
MaeII	ACGT	3 cut(s)	520, 649, 1249
MaeIII	GTNAC	5 cut(s)	523, 697, 1396, 1417, 1502
MalI	GATC	6 cut(s)	273, 426, 552, 863, 1408, 1588
MboI	GATC	6 cut(s)	271, 424, 550, 861, 1406, 1586
MboII	GAAGA	4 cut(s)	43, 305, 1245, 1632
MflI	RGATCY	1 cut(s)	1586
MhlI	GDGCHC	2 cut(s)	322, 1209
MlsI	TGGCCA	2 cut(s)	41, 722
MluNI	TGGCCA	2 cut(s)	41, 722
MlyI	GAGTC	1 cut(s)	318
Mox20I	TGGCCA	2 cut(s)	41, 722
Mph1103I	ATGCAT	1 cut(s)	1068
MroI	TCCGGA	2 cut(s)	224, 1366
MscI	TGGCCA	2 cut(s)	41, 722
MseI	TTAA	8 cut(s)	78, 126, 441, 495, 891, 1008, 1023, 1167
MslI	CAYNNNNRTG	2 cut(s)	47, 1061
Msp20I	TGGCCA	2 cut(s)	41, 722
MspA1I	CMGCKG	1 cut(s)	1202
MspCI	CTTAAG	1 cut(s)	440
MspI	CCGG	6 cut(s)	28, 225, 616, 1098, 1367, 1557
MspR9I	CCNGG	3 cut(s)	474, 801, 923
Mva1269I	GAATGC	1 cut(s)	124
MvaI	CCWGG	3 cut(s)	474, 801, 923
MvnI	CGCG	2 cut(s)	1202, 1332
MwoI	GCNNNNNNNGC	4 cut(s)	616, 1151, 1311, 1628
NdeI	CATATG	1 cut(s)	314
NdeII	GATC	6 cut(s)	271, 424, 550, 861, 1406, 1586
NlaIV	GGNNCC	2 cut(s)	223, 301
NmeAIII	GCCGAG	1 cut(s)	46
NsbI	TGCGCA	1 cut(s)	1518
NsiI	ATGCAT	1 cut(s)	1068
NspI	RCATGY	3 cut(s)	1066, 1070, 1523
PaeI	GCATGC	1 cut(s)	1523
PagI	TCATGA	1 cut(s)	114
PaqCI	CACCTGC	1 cut(s)	1399
PceI	AGGCCT	1 cut(s)	1534
PciSI	GCTCTTC	1 cut(s)	26
PctI	GAATGC	1 cut(s)	124
PfeI	GAWTC	3 cut(s)	1236, 1253, 1370
PflMI	CCANNNNNTGG	1 cut(s)	268
PkrI	GCNGC	6 cut(s)	238, 850, 901, 997, 1313, 1414
PleI	GAGTC	1 cut(s)	317
PpsI	GAGTC	1 cut(s)	317
Ppu21I	YACGTR	2 cut(s)	521, 650
PpuMI	RGGWCCY	1 cut(s)	299
Psp124BI	GAGCTC	1 cut(s)	1209
Psp5II	RGGWCCY	1 cut(s)	299
Psp6I	CCWGG	3 cut(s)	472, 799, 921
PspGI	CCWGG	3 cut(s)	472, 799, 921
PspN4I	GGNNCC	2 cut(s)	223, 301
PspPI	GGNCC	3 cut(s)	299, 919, 1213
PspPPI	RGGWCCY	1 cut(s)	299
PstI	CTGCAG	1 cut(s)	853
PstNI	CAGNNNCTG	1 cut(s)	1619
PsuI	RGATCY	1 cut(s)	1586
RsaI	GTAC	4 cut(s)	26, 66, 246, 753
RsaNI	GTAC	4 cut(s)	25, 65, 245, 752
RseI	CAYNNNNRTG	2 cut(s)	47, 1061
SacI	GAGCTC	1 cut(s)	1209
SacII	CCGCGG	1 cut(s)	1203
SapI	GCTCTTC	1 cut(s)	26
SaqAI	TTAA	8 cut(s)	78, 126, 441, 495, 891, 1008, 1023, 1167
SatI	GCNGC	6 cut(s)	237, 849, 900, 996, 1312, 1413
Sau3AI	GATC	6 cut(s)	271, 424, 550, 861, 1406, 1586
Sau96I	GGNCC	3 cut(s)	299, 919, 1213
SchI	GAGTC	1 cut(s)	318
ScrFI	CCNGG	3 cut(s)	474, 801, 923
SduI	GDGCHC	2 cut(s)	322, 1209
SexAI	ACCWGGT	1 cut(s)	799
SfaNI	GCATC	3 cut(s)	393, 504, 972
SfcI	CTRYAG	2 cut(s)	591, 849
Sfr303I	CCGCGG	1 cut(s)	1203
SgrBI	CCGCGG	1 cut(s)	1203
SinI	GGWCC	3 cut(s)	299, 919, 1213
SmiMI	CAYNNNNRTG	2 cut(s)	47, 1061
SmlI	CTYRAG	2 cut(s)	440, 738
SmoI	CTYRAG	2 cut(s)	440, 738
SpeI	ACTAGT	1 cut(s)	1400
SphI	GCATGC	1 cut(s)	1523
SseBI	AGGCCT	1 cut(s)	1534
SsiI	CCGC	9 cut(s)	107, 237, 1200, 1202, 1305, 1311, 1332, 1413, 1711
SspMI	CTAG	6 cut(s)	533, 669, 930, 1401, 1689, 1701
SstI	GAGCTC	1 cut(s)	1209
StuI	AGGCCT	1 cut(s)	1534
StyD4I	CCNGG	3 cut(s)	472, 799, 921
StyI	CCWWGG	2 cut(s)	68, 565
TaaI	ACNGT	7 cut(s)	95, 162, 703, 1149, 1508, 1606, 1733
TaiI	ACGT	3 cut(s)	523, 652, 1252
TaqI	TCGA	6 cut(s)	416, 864, 1321, 1405, 1511, 1664
TatI	WGTACW	2 cut(s)	244, 751
TauI	GCSGC	3 cut(s)	239, 1314, 1415
TfiI	GAWTC	3 cut(s)	1236, 1253, 1370
Tru1I	TTAA	8 cut(s)	78, 126, 441, 495, 891, 1008, 1023, 1167
Tru9I	TTAA	8 cut(s)	78, 126, 441, 495, 891, 1008, 1023, 1167
TscAI	CASTG	6 cut(s)	167, 513, 708, 858, 1321, 1632
TseI	GCWGC	3 cut(s)	848, 899, 995
TspDTI	ATGAA	8 cut(s)	131, 156, 515, 737, 896, 1061, 1238, 1464
TspGWI	ACGGA	2 cut(s)	377, 1694
TspRI	CASTG	6 cut(s)	167, 513, 708, 858, 1321, 1632
Van91I	CCANNNNNTGG	1 cut(s)	268
Vha464I	CTTAAG	1 cut(s)	440
VneI	GTGCAC	1 cut(s)	318
VpaK11BI	GGWCC	3 cut(s)	299, 919, 1213
XapI	RAATTY	4 cut(s)	365, 675, 1648, 1660
XbaI	TCTAGA	1 cut(s)	1688
XceI	RCATGY	3 cut(s)	1066, 1070, 1523
XspI	CTAG	6 cut(s)	533, 669, 930, 1401, 1689, 1701
Zsp2I	ATGCAT	1 cut(s)	1068

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.