Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0003007

Physical Location & Seq

Genomic Coordinates Forward (+)

16586889 .. 16590654

Gene Structure 3766 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023004

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2352 bp

ATGTCCAAGAGGAAGTTCGGATTCGAAGGGTTCGGCATAAACCGGCAATCGACCTACAACTTCGAGCAGTCGCAACAAGACCCTCAGCGACTCTACGTCCCTCCTCCCTCCTCCTCCCGCGCCCATGGCCACGACAATTACGAAGACACCGACCTTGACAACATCGATTACGACGACATTGAAGCCGGAAACACTCACGGTGACGGCGGAGGAGACGCCGGCGGCGGCGGTGACGAAGAAGTCGATCCTCTCGATGCTTTCATGGAGGGGATTCACCAGGAGGTGAGGTCAGCACCGCCGCCCAAGCCCAAAGAGAAGGCCGACAAGTACCAGGACGATGACGAGGAGGATCATCTGGAGAGTTTCTTGACGGCCAAGAAGGACGCAACGCTGACTCTGGCCTCCGACGCGCTCCACGCCGGCTATGATTCCGACGAGGAGGTCTATGCTGCTGCCAAGGCTGTGGATGCCGGAATGTTGGAGTATGATTCCGATGACAATCCCGTTGTTGTGGACAGGAGGAAGATCGAGCCAATTTCAGCTCTGGATCATACTTCCATTGACTACGAGCCATTCACCAAGGACTTCTACGAGGAGAAAGAGTCGATTTCAGGGATGAGTGAGCAGGATGTTGCTGAGTACCGGAAGAGCTTGGCCATCCGAGTGTCTGGCTTCGATGTTCCAAGGCCAATTAAGACATTTGATGACTGTGCGTTTTCTCCGCAACTCATGAATGCAATTAAAAAACAAGAGTATGAAAAGCCTACACCAATACAGTGCCAAGCTTTACCCATAGTTCTTTCTGGGAGGGATATCATTGGTATAGCAAAAACTGGCTCCGGAAAGACTGCCGCTTTTGTACTTCCCATGATTTGCCATATTATGGATCAGCCAGAACTTCAGAAAGAAGAAGGTCCTATAGGAGTCATATGTGCACCTACCAGAGAACTGGCGCAACAAATACACTTAGAGGCCAAGAAATTTGCTAAATCACATGGCATCCGTGTCTGTTCTGTATATGGTGGCATGTCGAAGCTTGATCAGTTCAAAGAACTTAAGGCAGGATGTGAGATAGTTGTAGCTACTCCTGGGAGATTGATAGACATGATTAAAATGAAGGCACTGACGATGCTACGTGTAACTTACCTAGTGCTTGATGAGGCTGATCGGATGTTTGACCTTGGTTTTGAGCCTCAAATTAGGTCTATAGTTGGTCAGATTAGGCCAGACCGGCAAACGCTACTCTTTTCTGCTACAATGCCACGTAAAGTTGAAAAGTTGGCTAGAGAAATTCTTTCTGACCCTGTAAGAGTTACAGTGGGTGAGGTGGGAATGGCCAATGAGGATATCACTCAAGTTGTTCATGTACTTCCTTCTGAAGCTGAGAAATTGCCGTGGCTTCTTGAACGATTACCTGGTATGATTGATGATGGTGATGTTCTCGTATTTGCTTCTAAAAAAGCTGCAGTGGATGAGATCGAAACACAGCTTTCTCAGAAAGGTTTTAAAGTTGCAGCTATTCATGGTGATAAGGACCAGGCTACTAGGATGGATATTATGCAAAAATATAAATCTGGCATCTACCATGTTCTGATTGCAACTGATGTTGCTGCTCGTGGTCTTAACATCAAGTCAATTAAGTCAGTTGTGAACTTTGATATTGCAAAAGACATGGACATGCATGTTCATCGTATTGGTAGAACGGGTCGTGCCGGAGATAAAGATGGGACTGCATACACTCTTATCACGCATAAAGAGGCACGGTTTGCTGGAGAATTGGTTAATAGCTTAGTTGGTGCTGGTCAGAATGTTCCCGCGGAGCTCATGGACCTTGCGATGAAGGATGGAAGATTCAGGTCTAAACGGGATTCAAGAAAAGGAGGTGGCAAGAAGGGTAGGGGGAGAGGTGGTGGTGGAGGCGGTGGCAGCAGTGGTCGAGGTGTGCGCGGGGTGGATTTTGGTCTGGGTATTGGATATAATCCGGAATCCAATAGTTCTCCATCACCCGCCGTTACTAGTCGATCTGCTGCAGTTACTTCTCTAAGAACAGGAATGATGTCTCAATTCAAGAGTAAGTTTGTTTCTGCTTCATCAAACTCTCCAAGTCAGGGTTCTGGTAACAGTTCGAGTGCGCATGCCAACAAGAGGCCTGCATTACGAGGATTTGTAGCCGGTGGTTCTATTGGTGGAGACATACATAGATCTCAGACAACCAATACAGTTTCTCCAGCTCCTGCACCAGTGGCAAACATATCTTCTCAGAATTCTGGAGAAAATTCGAGCCAGAAGCCAACGGAAAGTTCTAGAGATAAACCTAGAGAAAGGCGGAGGCGCTCTGGTTGGGACTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

784

Amino Acids

85.13

Weight (kDa)

5.92

Isoelectric Point (pI)

49.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	256 - 426	3.7e-52	DEAD/DEAH box helicase
Helicase_C	PF00271	473 - 572	4.4e-26	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003007)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47330
fragaria_vesca	FvH4_1g27100 FvH4_1g27100 FvH4_1g27100
malus_domestica	MD00G1118300.v1.1 MD00G1118400.v1.1 MD09G1283400.v1.1 MD17G1274100.v1.1 MD17G1274800.v1.1 MD17G1275300.v1.1 MD17G1276500.v1.1
prunus_persica	Prupe.3G010900_v2.0.a1 Prupe.3G010900_v2.0.a1 Prupe.3G010900_v2.0.a1 Prupe.3G010900_v2.0.a1 Prupe.3G010900_v2.0.a1
pyrus_communis	pycom09g19130 pycom09g19140 pycom17g27210 pycom17g27330
rosa_chinensis	RchiOBHm_Chr3g0487421
rosa_laevigata	RLG00000023004
rosa_multiflora	Rmu_sc0008232.1_g000009 Rmu_sc0022533.1_g000001 Rmu_sc0031316.1_g000001
rosa_roxburghii	Rroxscaffold_6G00394790
rosa_rugosa	Rorug03G0234000
rosa_samantha	Rh2AG395100 Rh2CG381700 Rh3AG282000 Rh3BG317600 Rh3CG315700 Rh3DG313600 Rh4CG235900 Rh7AG337700 Rh7AG476200 Rh7CG355800
rosa_wichuraiana	Rw3G024970

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	239, 440
Acc16I	TGCGCA	1 cut(s)	2133
AccB7I	CCANNNNNTGG	1 cut(s)	883
AccII	CGCG	4 cut(s)	120, 410, 1817, 1947
AccIII	TCCGGA	2 cut(s)	839, 1981
AclWI	GGATC	4 cut(s)	239, 357, 555, 894
AcoI	YGGCCR	4 cut(s)	127, 372, 654, 1335
AcsI	RAATTY	4 cut(s)	980, 1290, 2263, 2275
AcuI	CTGAAG	2 cut(s)	884, 1398
AcyI	GRCGYC	1 cut(s)	216
AfaI	GTAC	4 cut(s)	329, 641, 861, 1368
AfiI	CCNNNNNNNGG	3 cut(s)	883, 2108, 2145
AflII	CTTAAG	1 cut(s)	1055
AflIII	ACRYGT	1 cut(s)	1135
AgsI	TTSAA	6 cut(s)	182, 1048, 1274, 1406, 1872, 2068
AhdI	GACNNNNNGTC	1 cut(s)	95
AhlI	ACTAGT	1 cut(s)	2015
AjnI	CCWGG	5 cut(s)	276, 330, 1087, 1414, 1536
AjuI	GAANNNNNNNTTGG	5 cut(s)	31, 2095, 2127, 2284, 2316
Alw21I	GWGCWC	2 cut(s)	937, 1824
Alw26I	GTCTC	3 cut(s)	207, 2064, 2184
Alw44I	GTGCAC	1 cut(s)	933
AlwI	GGATC	4 cut(s)	239, 357, 555, 894
AlwNI	CAGNNNCTG	1 cut(s)	2234
Aor13HI	TCCGGA	2 cut(s)	839, 1981
ApaLI	GTGCAC	1 cut(s)	933
ApeKI	GCWGC	7 cut(s)	449, 452, 1463, 1514, 1610, 1926, 2027
ApoI	RAATTY	4 cut(s)	980, 1290, 2263, 2275
ArsI	GACNNNNNNTTYG	2 cut(s)	1169, 1201
AspLEI	GCGC	6 cut(s)	122, 412, 955, 1947, 2134, 2334
AspS9I	GGNCC	3 cut(s)	914, 1534, 1828
AsuHPI	GGTGA	9 cut(s)	212, 242, 266, 295, 568, 1334, 1445, 1538, 1995
AsuII	TTCGAA	1 cut(s)	24
AvaII	GGWCC	3 cut(s)	914, 1534, 1828
BaeGI	GKGCMC	1 cut(s)	937
BalI	TGGCCA	3 cut(s)	129, 656, 1337
BanII	GRGCYC	1 cut(s)	1824
BauI	CACGAG	1 cut(s)	1614
BbsI	GAAGAC	1 cut(s)	150
Bbv12I	GWGCWC	2 cut(s)	937, 1824
BbvCI	CCTCAGC	1 cut(s)	84
BbvI	GCAGC	7 cut(s)	436, 439, 1450, 1526, 1597, 1938, 2014
BccI	CCATC	6 cut(s)	665, 1424, 1543, 1718, 1838, 2008
BceAI	ACGGC	4 cut(s)	220, 387, 1378, 1994
BcgI	CGANNNNNNTGC	2 cut(s)	1670, 1704
BciT130I	CCWGG	5 cut(s)	278, 332, 1089, 1416, 1538
BclI	TGATCA	1 cut(s)	1039
BcoDI	GTCTC	3 cut(s)	207, 2064, 2184
BcuI	ACTAGT	1 cut(s)	2015
BfaI	CTAG	6 cut(s)	1148, 1284, 1545, 2016, 2304, 2316
BfmI	CTRYAG	4 cut(s)	918, 1206, 1464, 2028
BfoI	RGCGCY	1 cut(s)	2335
BfrI	CTTAAG	1 cut(s)	1055
BglI	GCCNNNNNGGC	1 cut(s)	1231
BglII	AGATCT	1 cut(s)	2201
Bme1390I	CCNGG	5 cut(s)	278, 332, 1089, 1416, 1538
Bme18I	GGWCC	3 cut(s)	914, 1534, 1828
BmeRI	GACNNNNNGTC	1 cut(s)	95
BmgT120I	GGNCC	3 cut(s)	914, 1534, 1828
BmiI	GGNNCC	1 cut(s)	838
BmrFI	CCNGG	5 cut(s)	278, 332, 1089, 1416, 1538
BmsI	GCATC	5 cut(s)	244, 457, 1008, 1119, 1587
BpiI	GAAGAC	1 cut(s)	150
BpmI	CTGGAG	4 cut(s)	377, 1791, 2211, 2289
Bpu10I	CCTNAGC	1 cut(s)	84
Bpu14I	TTCGAA	1 cut(s)	24
BpuEI	CTTGAG	1 cut(s)	1338
Bsa29I	ATCGAT	1 cut(s)	165
BsaAI	YACGTR	2 cut(s)	1136, 1265
BsaBI	GATNNNNATC	1 cut(s)	498
BsaHI	GRCGYC	1 cut(s)	216
BsaJI	CCNNGG	8 cut(s)	124, 456, 579, 683, 1088, 1180, 1394, 1815
BsaWI	WCCGGW	3 cut(s)	642, 839, 1981
Bsc4I	CCNNNNNNNGG	3 cut(s)	883, 2108, 2145
Bse118I	RCCGGY	5 cut(s)	42, 218, 419, 1230, 2171
Bse1I	ACTGG	3 cut(s)	838, 954, 2240
Bse8I	GATNNNNATC	1 cut(s)	498
BseAI	TCCGGA	2 cut(s)	839, 1981
BseBI	CCWGG	5 cut(s)	278, 332, 1089, 1416, 1538
BseCI	ATCGAT	1 cut(s)	165
BseDI	CCNNGG	8 cut(s)	124, 456, 579, 683, 1088, 1180, 1394, 1815
BseJI	GATNNNNATC	1 cut(s)	498
BseLI	CCNNNNNNNGG	3 cut(s)	883, 2108, 2145
BseMII	CTCAG	6 cut(s)	98, 627, 1374, 1508, 2219, 2273
BseNI	ACTGG	3 cut(s)	838, 954, 2240
BseRI	GAGGAG	7 cut(s)	93, 100, 103, 225, 359, 452, 608
BseSI	GKGCMC	1 cut(s)	937
BseXI	GCAGC	7 cut(s)	436, 439, 1450, 1526, 1597, 1938, 2014
BsgI	GTGCAG	1 cut(s)	2220
Bsh1236I	CGCG	4 cut(s)	120, 410, 1817, 1947
BshVI	ATCGAT	1 cut(s)	165
BsiHKAI	GWGCWC	2 cut(s)	937, 1824
BslFI	GGGAC	2 cut(s)	83, 1741
BslI	CCNNNNNNNGG	3 cut(s)	883, 2108, 2145
BsmAI	GTCTC	3 cut(s)	207, 2064, 2184
BsmBI	CGTCTC	1 cut(s)	207
BsmFI	GGGAC	2 cut(s)	83, 1741
BsmI	GAATGC	1 cut(s)	739
Bsp119I	TTCGAA	1 cut(s)	24
Bsp1286I	GDGCHC	2 cut(s)	937, 1824
Bsp13I	TCCGGA	2 cut(s)	839, 1981
Bsp19I	CCATGG	1 cut(s)	124
BspCNI	CTCAG	6 cut(s)	97, 628, 1375, 1507, 2218, 2272
BspDI	ATCGAT	1 cut(s)	165
BspEI	TCCGGA	2 cut(s)	839, 1981
BspFNI	CGCG	4 cut(s)	120, 410, 1817, 1947
BspHI	TCATGA	1 cut(s)	729
BspLI	GGNNCC	1 cut(s)	838
BspMAI	CTGCAG	2 cut(s)	1468, 2032
BspPI	GGATC	4 cut(s)	239, 357, 555, 894
BspQI	GCTCTTC	1 cut(s)	641
BspT104I	TTCGAA	1 cut(s)	24
BspTI	CTTAAG	1 cut(s)	1055
BsrFI	RCCGGY	5 cut(s)	42, 218, 419, 1230, 2171
BsrI	ACTGG	3 cut(s)	838, 954, 2240
BssAI	RCCGGY	5 cut(s)	42, 218, 419, 1230, 2171
BssECI	CCNNGG	8 cut(s)	124, 456, 579, 683, 1088, 1180, 1394, 1815
BssNI	GRCGYC	1 cut(s)	216
BssSI	CACGAG	1 cut(s)	1614
BssT1I	CCWWGG	5 cut(s)	124, 456, 579, 683, 1180
Bst2BI	CACGAG	1 cut(s)	1614
Bst2UI	CCWGG	5 cut(s)	278, 332, 1089, 1416, 1538
Bst4CI	ACNGT	8 cut(s)	200, 710, 777, 1318, 1764, 2123, 2221, 2348
Bst6I	CTCTTC	1 cut(s)	641
BstACI	GRCGYC	1 cut(s)	216
BstAFI	CTTAAG	1 cut(s)	1055
BstAPI	GCANNNNNTGC	1 cut(s)	1766
BstBAI	YACGTR	2 cut(s)	1136, 1265
BstBI	TTCGAA	1 cut(s)	24
BstC8I	GCNNGC	4 cut(s)	220, 421, 2136, 2151
BstDEI	CTNAG	9 cut(s)	84, 636, 967, 1383, 1494, 1789, 2042, 2205, 2259
BstDSI	CCRYGG	3 cut(s)	124, 1394, 1815
BstFNI	CGCG	4 cut(s)	120, 410, 1817, 1947
BstH2I	RGCGCY	1 cut(s)	2335
BstHHI	GCGC	6 cut(s)	122, 412, 955, 1947, 2134, 2334
BstMAI	GTCTC	3 cut(s)	207, 2064, 2184
BstNI	CCWGG	5 cut(s)	278, 332, 1089, 1416, 1538
BstNSI	RCATGY	4 cut(s)	1030, 1681, 1685, 2138
BstSCI	CCNGG	5 cut(s)	276, 330, 1087, 1414, 1536
BstSFI	CTRYAG	4 cut(s)	918, 1206, 1464, 2028
BstSLI	GKGCMC	1 cut(s)	937
BstUI	CGCG	4 cut(s)	120, 410, 1817, 1947
BstV1I	GCAGC	7 cut(s)	436, 439, 1450, 1526, 1597, 1938, 2014
BstV2I	GAAGAC	1 cut(s)	150
BstX2I	RGATCY	1 cut(s)	2201
BstXI	CCANNNNNNTGG	2 cut(s)	463, 949
BstYI	RGATCY	1 cut(s)	2201
Bsu15I	ATCGAT	1 cut(s)	165
BsuTUI	ATCGAT	1 cut(s)	165
BtgI	CCRYGG	3 cut(s)	124, 1394, 1815
BtgZI	GCGATG	1 cut(s)	1850
BtsI	GCAGTG	2 cut(s)	1473, 1936
BtsIMutI	CAGTG	6 cut(s)	782, 1121, 1323, 1473, 1936, 2247
Cac8I	GCNNGC	4 cut(s)	220, 421, 2136, 2151
CaiI	CAGNNNCTG	1 cut(s)	2234
CciI	TCATGA	1 cut(s)	729
CfoI	GCGC	6 cut(s)	122, 412, 955, 1947, 2134, 2334
Cfr10I	RCCGGY	5 cut(s)	42, 218, 419, 1230, 2171
Cfr13I	GGNCC	3 cut(s)	914, 1534, 1828
Cfr42I	CCGCGG	1 cut(s)	1818
ClaI	ATCGAT	1 cut(s)	165
CseI	GACGC	3 cut(s)	224, 392, 416
CsiI	ACCWGGT	1 cut(s)	1414
Csp6I	GTAC	4 cut(s)	328, 640, 860, 1367
CviQI	GTAC	4 cut(s)	328, 640, 860, 1367
DdeI	CTNAG	9 cut(s)	84, 636, 967, 1383, 1494, 1789, 2042, 2205, 2259
DraI	TTTAAA	1 cut(s)	1507
DrdI	GACNNNNNNGTC	2 cut(s)	239, 440
DriI	GACNNNNNGTC	1 cut(s)	95
DseDI	GACNNNNNNGTC	2 cut(s)	239, 440
EaeI	YGGCCR	4 cut(s)	127, 372, 654, 1335
Eam1104I	CTCTTC	1 cut(s)	641
Eam1105I	GACNNNNNGTC	1 cut(s)	95
EarI	CTCTTC	1 cut(s)	641
EciI	GGCGGA	2 cut(s)	222, 2341
Ecl136II	GAGCTC	1 cut(s)	1822
Eco130I	CCWWGG	5 cut(s)	124, 456, 579, 683, 1180
Eco147I	AGGCCT	1 cut(s)	2149
Eco24I	GRGCYC	1 cut(s)	1824
Eco32I	GATATC	2 cut(s)	814, 1348
Eco47I	GGWCC	3 cut(s)	914, 1534, 1828
Eco53kI	GAGCTC	1 cut(s)	1822
Eco57I	CTGAAG	2 cut(s)	884, 1398
EcoICRI	GAGCTC	1 cut(s)	1822
EcoO109I	RGGNCCY	1 cut(s)	914
EcoRI	GAATTC	1 cut(s)	2263
EcoRII	CCWGG	5 cut(s)	276, 330, 1087, 1414, 1536
EcoRV	GATATC	2 cut(s)	814, 1348
EcoT14I	CCWWGG	5 cut(s)	124, 456, 579, 683, 1180
EcoT22I	ATGCAT	1 cut(s)	1683
EcoT38I	GRGCYC	1 cut(s)	1824
ErhI	CCWWGG	5 cut(s)	124, 456, 579, 683, 1180
Esp3I	CGTCTC	1 cut(s)	207
FaqI	GGGAC	2 cut(s)	83, 1741
FauI	CCCGC	4 cut(s)	125, 1822, 1940, 2014
FauNDI	CATATG	1 cut(s)	929
FbaI	TGATCA	1 cut(s)	1039
FriOI	GRGCYC	1 cut(s)	1824
FspAI	RTGCGCAY	1 cut(s)	2133
FspBI	CTAG	6 cut(s)	1148, 1284, 1545, 2016, 2304, 2316
FspI	TGCGCA	1 cut(s)	2133
GlaI	GCGC	6 cut(s)	121, 411, 954, 1946, 2133, 2333
GsuI	CTGGAG	4 cut(s)	377, 1791, 2211, 2289
HaeII	RGCGCY	1 cut(s)	2335
HgaI	GACGC	3 cut(s)	224, 392, 416
HhaI	GCGC	6 cut(s)	122, 412, 955, 1947, 2134, 2334
Hin1I	GRCGYC	1 cut(s)	216
Hin6I	GCGC	6 cut(s)	120, 410, 953, 1945, 2132, 2332
HinP1I	GCGC	6 cut(s)	120, 410, 953, 1945, 2132, 2332
HindIII	AAGCTT	2 cut(s)	783, 1034
HphI	GGTGA	9 cut(s)	212, 242, 266, 295, 568, 1334, 1445, 1538, 1995
Hpy166II	GTNNAC	3 cut(s)	514, 935, 1651
Hpy8I	GTNNAC	3 cut(s)	514, 935, 1651
Hpy99I	CGWCG	3 cut(s)	176, 410, 437
HpyAV	CCTTC	8 cut(s)	20, 310, 373, 905, 1111, 1383, 1834, 1885
HpyCH4III	ACNGT	8 cut(s)	200, 710, 777, 1318, 1764, 2123, 2221, 2348
HpyCH4IV	ACGT	3 cut(s)	96, 1135, 1264
HpyF3I	CTNAG	9 cut(s)	84, 636, 967, 1383, 1494, 1789, 2042, 2205, 2259
HpySE526I	ACGT	3 cut(s)	96, 1135, 1264
Hsp92I	GRCGYC	1 cut(s)	216
HspAI	GCGC	6 cut(s)	120, 410, 953, 1945, 2132, 2332
Kpn2I	TCCGGA	2 cut(s)	839, 1981
KroI	GCCGGC	2 cut(s)	218, 419
KroNI	GCCGGC	2 cut(s)	220, 421
Ksp22I	TGATCA	1 cut(s)	1039
KspI	CCGCGG	1 cut(s)	1818
LguI	GCTCTTC	1 cut(s)	641
LmnI	GCTCC	4 cut(s)	417, 842, 1819, 2236
Lsp1109I	GCAGC	7 cut(s)	436, 439, 1450, 1526, 1597, 1938, 2014
LweI	GCATC	5 cut(s)	244, 457, 1008, 1119, 1587
MabI	ACCWGGT	1 cut(s)	1414
MaeI	CTAG	6 cut(s)	1148, 1284, 1545, 2016, 2304, 2316
MaeII	ACGT	3 cut(s)	96, 1135, 1264
MaeIII	GTNAC	7 cut(s)	200, 230, 1138, 1312, 2011, 2032, 2117
MboII	GAAGA	7 cut(s)	155, 248, 535, 658, 920, 1860, 2247
MflI	RGATCY	1 cut(s)	2201
MhlI	GDGCHC	2 cut(s)	937, 1824
MlsI	TGGCCA	3 cut(s)	129, 656, 1337
MluNI	TGGCCA	3 cut(s)	129, 656, 1337
MlyI	GAGTC	4 cut(s)	84, 388, 611, 933
MmeI	TCCRAC	3 cut(s)	429, 456, 459
Mox20I	TGGCCA	3 cut(s)	129, 656, 1337
Mph1103I	ATGCAT	1 cut(s)	1683
MreI	CGCCGGCG	1 cut(s)	218
MroI	TCCGGA	2 cut(s)	839, 1981
MroNI	GCCGGC	2 cut(s)	218, 419
MscI	TGGCCA	3 cut(s)	129, 656, 1337
MseI	TTAA	8 cut(s)	693, 741, 1056, 1110, 1506, 1623, 1638, 1782
MslI	CAYNNNNRTG	2 cut(s)	662, 1676
Msp20I	TGGCCA	3 cut(s)	129, 656, 1337
MspA1I	CMGCKG	1 cut(s)	1817
MspCI	CTTAAG	1 cut(s)	1055
MspR9I	CCNGG	5 cut(s)	278, 332, 1089, 1416, 1538
Mva1269I	GAATGC	1 cut(s)	739
MvaI	CCWGG	5 cut(s)	278, 332, 1089, 1416, 1538
MvnI	CGCG	4 cut(s)	120, 410, 1817, 1947
NaeI	GCCGGC	2 cut(s)	220, 421
NcoI	CCATGG	1 cut(s)	124
NdeI	CATATG	1 cut(s)	929
NgoMIV	GCCGGC	2 cut(s)	218, 419
NlaIV	GGNNCC	1 cut(s)	838
NmuCI	GTSAC	2 cut(s)	200, 230
NsbI	TGCGCA	1 cut(s)	2133
NsiI	ATGCAT	1 cut(s)	1683
NspI	RCATGY	4 cut(s)	1030, 1681, 1685, 2138
NspV	TTCGAA	1 cut(s)	24
PaeI	GCATGC	1 cut(s)	2138
PagI	TCATGA	1 cut(s)	729
PceI	AGGCCT	1 cut(s)	2149
PciSI	GCTCTTC	1 cut(s)	641
PcsI	WCGNNNNNNNCGW	5 cut(s)	138, 147, 171, 240, 249
PctI	GAATGC	1 cut(s)	739
PdiI	GCCGGC	2 cut(s)	220, 421
PfeI	GAWTC	7 cut(s)	21, 271, 428, 488, 1851, 1868, 1985
PflMI	CCANNNNNTGG	1 cut(s)	883
PleI	GAGTC	4 cut(s)	84, 388, 610, 932
PpsI	GAGTC	4 cut(s)	84, 388, 610, 932
Ppu21I	YACGTR	2 cut(s)	1136, 1265
PpuMI	RGGWCCY	1 cut(s)	914
Psp124BI	GAGCTC	1 cut(s)	1824
Psp5II	RGGWCCY	1 cut(s)	914
Psp6I	CCWGG	5 cut(s)	276, 330, 1087, 1414, 1536
PspGI	CCWGG	5 cut(s)	276, 330, 1087, 1414, 1536
PspN4I	GGNNCC	1 cut(s)	838
PspPI	GGNCC	3 cut(s)	914, 1534, 1828
PspPPI	RGGWCCY	1 cut(s)	914
PstI	CTGCAG	2 cut(s)	1468, 2032
PstNI	CAGNNNCTG	1 cut(s)	2234
PsuI	RGATCY	1 cut(s)	2201
RsaI	GTAC	4 cut(s)	329, 641, 861, 1368
RsaNI	GTAC	4 cut(s)	328, 640, 860, 1367
RseI	CAYNNNNRTG	2 cut(s)	662, 1676
SacI	GAGCTC	1 cut(s)	1824
SacII	CCGCGG	1 cut(s)	1818
SapI	GCTCTTC	1 cut(s)	641
SaqAI	TTAA	8 cut(s)	693, 741, 1056, 1110, 1506, 1623, 1638, 1782
Sau96I	GGNCC	3 cut(s)	914, 1534, 1828
SchI	GAGTC	4 cut(s)	84, 388, 611, 933
ScrFI	CCNGG	5 cut(s)	278, 332, 1089, 1416, 1538
SduI	GDGCHC	2 cut(s)	937, 1824
SexAI	ACCWGGT	1 cut(s)	1414
SfaNI	GCATC	5 cut(s)	244, 457, 1008, 1119, 1587
SfcI	CTRYAG	4 cut(s)	918, 1206, 1464, 2028
Sfr303I	CCGCGG	1 cut(s)	1818
SfuI	TTCGAA	1 cut(s)	24
SgrAI	CRCCGGYG	1 cut(s)	218
SgrBI	CCGCGG	1 cut(s)	1818
SinI	GGWCC	3 cut(s)	914, 1534, 1828
SmiMI	CAYNNNNRTG	2 cut(s)	662, 1676
SmlI	CTYRAG	2 cut(s)	1055, 1353
SmoI	CTYRAG	2 cut(s)	1055, 1353
SpeI	ACTAGT	1 cut(s)	2015
SphI	GCATGC	1 cut(s)	2138
SseBI	AGGCCT	1 cut(s)	2149
SspMI	CTAG	6 cut(s)	1148, 1284, 1545, 2016, 2304, 2316
SstI	GAGCTC	1 cut(s)	1824
StuI	AGGCCT	1 cut(s)	2149
StyD4I	CCNGG	5 cut(s)	276, 330, 1087, 1414, 1536
StyI	CCWWGG	5 cut(s)	124, 456, 579, 683, 1180
TaaI	ACNGT	8 cut(s)	200, 710, 777, 1318, 1764, 2123, 2221, 2348
TaiI	ACGT	3 cut(s)	99, 1138, 1267
TatI	WGTACW	2 cut(s)	859, 1366
TauI	GCSGC	4 cut(s)	225, 228, 301, 854
TfiI	GAWTC	7 cut(s)	21, 271, 428, 488, 1851, 1868, 1985
Tru1I	TTAA	8 cut(s)	693, 741, 1056, 1110, 1506, 1623, 1638, 1782
Tru9I	TTAA	8 cut(s)	693, 741, 1056, 1110, 1506, 1623, 1638, 1782
TscAI	CASTG	6 cut(s)	782, 1128, 1323, 1473, 1936, 2247
TseFI	GTSAC	2 cut(s)	200, 230
TseI	GCWGC	7 cut(s)	449, 452, 1463, 1514, 1610, 1926, 2027
Tsp45I	GTSAC	2 cut(s)	200, 230
TspDTI	ATGAA	9 cut(s)	250, 746, 771, 1130, 1352, 1511, 1676, 1853, 2079
TspGWI	ACGGA	2 cut(s)	992, 2309
TspRI	CASTG	6 cut(s)	782, 1128, 1323, 1473, 1936, 2247
Van91I	CCANNNNNTGG	1 cut(s)	883
Vha464I	CTTAAG	1 cut(s)	1055
VneI	GTGCAC	1 cut(s)	933
VpaK11BI	GGWCC	3 cut(s)	914, 1534, 1828
XapI	RAATTY	4 cut(s)	980, 1290, 2263, 2275
XbaI	TCTAGA	1 cut(s)	2303
XceI	RCATGY	4 cut(s)	1030, 1681, 1685, 2138
XspI	CTAG	6 cut(s)	1148, 1284, 1545, 2016, 2304, 2316
Zsp2I	ATGCAT	1 cut(s)	1683

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.