Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0003007

Physical Location & Seq

Genomic Coordinates Reverse (-)

42447840 .. 42448190

Gene Structure 351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG337700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGGAGGGGATTCACTGGGAGGTGAGGTCAGCTCCGCCGCCCAAGCCCAAGGAGAAGGCCGACAAGTACCAGGACGATGATGAGGAGGATCATCTAGAGAGTTTCTTGAGGGCCAAGAAGGACACCACGCTAACTTTGGCCTCCGACGCGCCCCACCCCGGCTATGATTCCGACGAGGAGGTCTATGCCGCTGCTAAGGTTGTGGATGCCGGAATGATGGAGTATGATTCCGATGACAATCCCGTTGTTGTGGACAGGAGGAAGATCGAGCCAATTTCAGCTCTGGATCATACTTCCATTGACTACGAGCCATTCACCAAGGACTTCTACGAGGAGAAAGAGTTGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

116

Amino Acids

13.29

Weight (kDa)

4.38

Isoelectric Point (pI)

50.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003007)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47330
fragaria_vesca	FvH4_1g27100 FvH4_1g27100 FvH4_1g27100
malus_domestica	MD00G1118300.v1.1 MD00G1118400.v1.1 MD09G1283400.v1.1 MD17G1274100.v1.1 MD17G1274800.v1.1 MD17G1275300.v1.1 MD17G1276500.v1.1
prunus_persica	Prupe.3G010900_v2.0.a1 Prupe.3G010900_v2.0.a1 Prupe.3G010900_v2.0.a1 Prupe.3G010900_v2.0.a1 Prupe.3G010900_v2.0.a1
pyrus_communis	pycom09g19130 pycom09g19140 pycom17g27210 pycom17g27330
rosa_chinensis	RchiOBHm_Chr3g0487421
rosa_laevigata	RLG00000023004
rosa_multiflora	Rmu_sc0008232.1_g000009 Rmu_sc0022533.1_g000001 Rmu_sc0031316.1_g000001
rosa_roxburghii	Rroxscaffold_6G00394790
rosa_rugosa	Rorug03G0234000
rosa_samantha	Rh2AG395100 Rh2CG381700 Rh3AG282000 Rh3BG317600 Rh3CG315700 Rh3DG313600 Rh4CG235900 Rh7AG337700 Rh7AG476200 Rh7CG355800
rosa_wichuraiana	Rw3G024970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	179
AccII	CGCG	1 cut(s)	149
AciI	CCGC	3 cut(s)	35, 38, 189
AclWI	GGATC	2 cut(s)	96, 294
AfaI	GTAC	1 cut(s)	68
AfiI	CCNNNNNNNGG	1 cut(s)	158
AjnI	CCWGG	1 cut(s)	69
AluBI	AGCT	2 cut(s)	32, 281
AluI	AGCT	2 cut(s)	32, 281
AlwI	GGATC	2 cut(s)	96, 294
AoxI	GGCC	3 cut(s)	57, 111, 138
ApeKI	GCWGC	1 cut(s)	191
AspLEI	GCGC	1 cut(s)	151
AspS9I	GGNCC	1 cut(s)	111
AsuC2I	CCSGG	1 cut(s)	159
AsuHPI	GGTGA	2 cut(s)	34, 307
BbvI	GCAGC	1 cut(s)	178
BccI	CCATC	1 cut(s)	211
BciT130I	CCWGG	1 cut(s)	71
BcnI	CCSGG	1 cut(s)	159
BfaI	CTAG	1 cut(s)	95
BisI	GCNGC	3 cut(s)	38, 189, 192
BlsI	GCNGC	3 cut(s)	39, 190, 193
Bme1390I	CCNGG	2 cut(s)	71, 159
BmgT120I	GGNCC	1 cut(s)	111
BmrFI	CCNGG	2 cut(s)	71, 159
BmrI	ACTGGG	1 cut(s)	25
BmsI	GCATC	1 cut(s)	196
BmuI	ACTGGG	1 cut(s)	25
BplI	GAGNNNNNCTC	2 cut(s)	16, 48
Bpu10I	CCTNAGC	1 cut(s)	195
BpuEI	CTTGAG	1 cut(s)	127
BpuMI	CCSGG	1 cut(s)	159
BsaBI	GATNNNNATC	1 cut(s)	237
BsaJI	CCNNGG	3 cut(s)	48, 157, 318
BsaXI	ACNNNNNCTCC	3 cut(s)	11, 41, 326
Bsc4I	CCNNNNNNNGG	1 cut(s)	158
Bse1I	ACTGG	1 cut(s)	20
Bse8I	GATNNNNATC	1 cut(s)	237
BseBI	CCWGG	1 cut(s)	71
BseDI	CCNNGG	3 cut(s)	48, 157, 318
BseGI	GGATG	1 cut(s)	211
BseJI	GATNNNNATC	1 cut(s)	237
BseLI	CCNNNNNNNGG	1 cut(s)	158
BseNI	ACTGG	1 cut(s)	20
BseRI	GAGGAG	3 cut(s)	98, 191, 347
BseXI	GCAGC	1 cut(s)	178
Bsh1236I	CGCG	1 cut(s)	149
BshFI	GGCC	3 cut(s)	59, 113, 140
BsiSI	CCGG	2 cut(s)	159, 210
BslI	CCNNNNNNNGG	1 cut(s)	158
BsnI	GGCC	3 cut(s)	59, 113, 140
Bsp143I	GATC	3 cut(s)	88, 264, 286
BspACI	CCGC	3 cut(s)	35, 38, 189
BspANI	GGCC	3 cut(s)	59, 113, 140
BspFNI	CGCG	1 cut(s)	149
BspPI	GGATC	2 cut(s)	96, 294
BsrI	ACTGG	1 cut(s)	20
BssECI	CCNNGG	3 cut(s)	48, 157, 318
BssMI	GATC	3 cut(s)	88, 264, 286
BssT1I	CCWWGG	2 cut(s)	48, 318
Bst2UI	CCWGG	1 cut(s)	71
BstDEI	CTNAG	1 cut(s)	195
BstF5I	GGATG	1 cut(s)	211
BstFNI	CGCG	1 cut(s)	149
BstHHI	GCGC	1 cut(s)	151
BstKTI	GATC	3 cut(s)	91, 267, 289
BstMBI	GATC	3 cut(s)	88, 264, 286
BstMWI	GCNNNNNNNGC	2 cut(s)	43, 146
BstNI	CCWGG	1 cut(s)	71
BstSCI	CCNGG	2 cut(s)	69, 157
BstUI	CGCG	1 cut(s)	149
BstV1I	GCAGC	1 cut(s)	178
BsuRI	GGCC	3 cut(s)	59, 113, 140
BtsCI	GGATG	1 cut(s)	211
BtsIMutI	CAGTG	1 cut(s)	13
CfoI	GCGC	1 cut(s)	151
Cfr13I	GGNCC	1 cut(s)	111
CseI	GACGC	1 cut(s)	155
Csp6I	GTAC	1 cut(s)	67
CviJI	RGCY	9 cut(s)	32, 46, 59, 113, 140, 162, 271, 281, 310
CviKI_1	RGCY	9 cut(s)	32, 46, 59, 113, 140, 162, 271, 281, 310
CviQI	GTAC	1 cut(s)	67
DdeI	CTNAG	1 cut(s)	195
DpnI	GATC	3 cut(s)	90, 266, 288
DpnII	GATC	3 cut(s)	88, 264, 286
DrdI	GACNNNNNNGTC	1 cut(s)	179
DseDI	GACNNNNNNGTC	1 cut(s)	179
EciI	GGCGGA	1 cut(s)	24
Eco130I	CCWWGG	2 cut(s)	48, 318
EcoRII	CCWGG	1 cut(s)	69
EcoT14I	CCWWGG	2 cut(s)	48, 318
ErhI	CCWWGG	2 cut(s)	48, 318
FaiI	YATR	4 cut(s)	165, 186, 225, 291
Fnu4HI	GCNGC	3 cut(s)	38, 189, 192
FokI	GGATG	1 cut(s)	218
Fsp4HI	GCNGC	3 cut(s)	38, 189, 192
FspBI	CTAG	1 cut(s)	95
GlaI	GCGC	1 cut(s)	150
GluI	GCNGC	3 cut(s)	38, 189, 192
HaeIII	GGCC	3 cut(s)	59, 113, 140
HapII	CCGG	2 cut(s)	159, 210
HgaI	GACGC	1 cut(s)	155
HhaI	GCGC	1 cut(s)	151
Hin6I	GCGC	1 cut(s)	149
HinP1I	GCGC	1 cut(s)	149
HinfI	GANTC	3 cut(s)	10, 167, 227
HpaII	CCGG	2 cut(s)	159, 210
HphI	GGTGA	2 cut(s)	34, 307
Hpy166II	GTNNAC	1 cut(s)	253
Hpy188I	TCNGA	3 cut(s)	145, 172, 232
Hpy188III	TCNNGA	3 cut(s)	95, 106, 284
Hpy8I	GTNNAC	1 cut(s)	253
Hpy99I	CGWCG	2 cut(s)	149, 176
HpyAV	CCTTC	2 cut(s)	49, 112
HpyF10VI	GCNNNNNNNGC	2 cut(s)	43, 146
HpyF3I	CTNAG	1 cut(s)	195
HspAI	GCGC	1 cut(s)	149
Kzo9I	GATC	3 cut(s)	88, 264, 286
LmnI	GCTCC	1 cut(s)	37
LpnPI	CCDG	6 cut(s)	56, 83, 172, 223, 241, 269
Lsp1109I	GCAGC	1 cut(s)	178
LweI	GCATC	1 cut(s)	196
MaeI	CTAG	1 cut(s)	95
MalI	GATC	3 cut(s)	90, 266, 288
MboI	GATC	3 cut(s)	88, 264, 286
MboII	GAAGA	1 cut(s)	274
MluCI	AATT	1 cut(s)	273
MmeI	TCCRAC	2 cut(s)	168, 195
MspA1I	CMGCKG	1 cut(s)	191
MspI	CCGG	2 cut(s)	159, 210
MspR9I	CCNGG	2 cut(s)	71, 159
MvaI	CCWGG	1 cut(s)	71
MvnI	CGCG	1 cut(s)	149
MwoI	GCNNNNNNNGC	2 cut(s)	43, 146
NciI	CCSGG	1 cut(s)	159
NdeII	GATC	3 cut(s)	88, 264, 286
PfeI	GAWTC	3 cut(s)	10, 167, 227
PkrI	GCNGC	3 cut(s)	39, 190, 193
Psp6I	CCWGG	1 cut(s)	69
PspGI	CCWGG	1 cut(s)	69
PspPI	GGNCC	1 cut(s)	111
RsaI	GTAC	1 cut(s)	68
RsaNI	GTAC	1 cut(s)	67
SatI	GCNGC	3 cut(s)	38, 189, 192
Sau3AI	GATC	3 cut(s)	88, 264, 286
Sau96I	GGNCC	1 cut(s)	111
ScrFI	CCNGG	2 cut(s)	71, 159
SetI	ASST	6 cut(s)	24, 29, 34, 183, 201, 283
SfaNI	GCATC	1 cut(s)	196
SmlI	CTYRAG	1 cut(s)	106
SmoI	CTYRAG	1 cut(s)	106
Sse9I	AATT	1 cut(s)	273
SsiI	CCGC	3 cut(s)	35, 38, 189
SspMI	CTAG	1 cut(s)	95
StyD4I	CCNGG	2 cut(s)	69, 157
StyI	CCWWGG	2 cut(s)	48, 318
TaqI	TCGA	1 cut(s)	267
TasI	AATT	1 cut(s)	273
TauI	GCSGC	2 cut(s)	40, 191
TfiI	GAWTC	3 cut(s)	10, 167, 227
TscAI	CASTG	1 cut(s)	20
TseI	GCWGC	1 cut(s)	191
TspRI	CASTG	1 cut(s)	20
XbaI	TCTAGA	1 cut(s)	94
XcmI	CCANNNNNNNNNTGG	1 cut(s)	133
XspI	CTAG	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.