Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0003007

Physical Location & Seq

Genomic Coordinates Forward (+)

66641675 .. 66642026

Gene Structure 352 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG476200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 352 bp

ATGGAGGGGATTCACCAGGAGGTGAGGTCAGCTCCTCCACCCAAGCCCAAGGAGAAGGCCGACAAGTACCAGGACGATGGTGAGGAAGATCATCTAGAGAGTTTCTTGAGGGCCAAGAAGGACGCCACGCTAACTCTGGCCTCCAACGCGCTCCACACCGGTTATGATTCCGACGAGGAGGTCTATGCCACTGCCAAGGTTGTGGATGCCGGAATGTTGGAGTATGATTCCGATGACAATCCCGTTGTTGTGGACAGGAGGAAGATCGAGCCAATTTCAGCTCTGGATCATACTTCCATTGACTACGAGCCATTCACCAAGGACTTCAAAGAGGAGAAAGAGTCGATTTCAT

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

117

Amino Acids

13.2

Weight (kDa)

4.53

Isoelectric Point (pI)

48.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003007)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47330
fragaria_vesca	FvH4_1g27100 FvH4_1g27100 FvH4_1g27100
malus_domestica	MD00G1118300.v1.1 MD00G1118400.v1.1 MD09G1283400.v1.1 MD17G1274100.v1.1 MD17G1274800.v1.1 MD17G1275300.v1.1 MD17G1276500.v1.1
prunus_persica	Prupe.3G010900_v2.0.a1 Prupe.3G010900_v2.0.a1 Prupe.3G010900_v2.0.a1 Prupe.3G010900_v2.0.a1 Prupe.3G010900_v2.0.a1
pyrus_communis	pycom09g19130 pycom09g19140 pycom17g27210 pycom17g27330
rosa_chinensis	RchiOBHm_Chr3g0487421
rosa_laevigata	RLG00000023004
rosa_multiflora	Rmu_sc0008232.1_g000009 Rmu_sc0022533.1_g000001 Rmu_sc0031316.1_g000001
rosa_roxburghii	Rroxscaffold_6G00394790
rosa_rugosa	Rorug03G0234000
rosa_samantha	Rh2AG395100 Rh2CG381700 Rh3AG282000 Rh3BG317600 Rh3CG315700 Rh3DG313600 Rh4CG235900 Rh7AG337700 Rh7AG476200 Rh7CG355800
rosa_wichuraiana	Rw3G024970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	179
AccII	CGCG	1 cut(s)	149
AclWI	GGATC	1 cut(s)	294
AcyI	GRCGYC	1 cut(s)	123
AfaI	GTAC	1 cut(s)	68
AgeI	ACCGGT	1 cut(s)	158
AgsI	TTSAA	1 cut(s)	328
AjnI	CCWGG	2 cut(s)	15, 69
AluBI	AGCT	2 cut(s)	32, 281
AluI	AGCT	2 cut(s)	32, 281
AlwI	GGATC	1 cut(s)	294
AoxI	GGCC	3 cut(s)	57, 111, 138
AsiGI	ACCGGT	1 cut(s)	158
AspLEI	GCGC	1 cut(s)	151
AspS9I	GGNCC	1 cut(s)	111
AsuHPI	GGTGA	4 cut(s)	5, 34, 92, 307
BccI	CCATC	1 cut(s)	71
BciT130I	CCWGG	2 cut(s)	17, 71
BfaI	CTAG	1 cut(s)	95
Bme1390I	CCNGG	2 cut(s)	17, 71
BmgT120I	GGNCC	1 cut(s)	111
BmrFI	CCNGG	2 cut(s)	17, 71
BmsI	GCATC	1 cut(s)	196
BplI	GAGNNNNNCTC	2 cut(s)	16, 48
BpuEI	CTTGAG	1 cut(s)	127
BsaBI	GATNNNNATC	1 cut(s)	237
BsaHI	GRCGYC	1 cut(s)	123
BsaJI	CCNNGG	3 cut(s)	48, 195, 318
BsaWI	WCCGGW	1 cut(s)	158
BsaXI	ACNNNNNCTCC	3 cut(s)	11, 41, 326
Bse118I	RCCGGY	1 cut(s)	158
Bse8I	GATNNNNATC	1 cut(s)	237
BseBI	CCWGG	2 cut(s)	17, 71
BseDI	CCNNGG	3 cut(s)	48, 195, 318
BseGI	GGATG	1 cut(s)	211
BseJI	GATNNNNATC	1 cut(s)	237
BseRI	GAGGAG	3 cut(s)	24, 191, 347
Bsh1236I	CGCG	1 cut(s)	149
BshFI	GGCC	3 cut(s)	59, 113, 140
BshTI	ACCGGT	1 cut(s)	158
BsiSI	CCGG	2 cut(s)	159, 210
BsnI	GGCC	3 cut(s)	59, 113, 140
Bsp143I	GATC	3 cut(s)	88, 264, 286
BspANI	GGCC	3 cut(s)	59, 113, 140
BspFNI	CGCG	1 cut(s)	149
BspPI	GGATC	1 cut(s)	294
BsrFI	RCCGGY	1 cut(s)	158
BssAI	RCCGGY	1 cut(s)	158
BssECI	CCNNGG	3 cut(s)	48, 195, 318
BssMI	GATC	3 cut(s)	88, 264, 286
BssNI	GRCGYC	1 cut(s)	123
BssT1I	CCWWGG	3 cut(s)	48, 195, 318
Bst2UI	CCWGG	2 cut(s)	17, 71
BstACI	GRCGYC	1 cut(s)	123
BstF5I	GGATG	1 cut(s)	211
BstFNI	CGCG	1 cut(s)	149
BstHHI	GCGC	1 cut(s)	151
BstKTI	GATC	3 cut(s)	91, 267, 289
BstMBI	GATC	3 cut(s)	88, 264, 286
BstMWI	GCNNNNNNNGC	1 cut(s)	146
BstNI	CCWGG	2 cut(s)	17, 71
BstSCI	CCNGG	2 cut(s)	15, 69
BstUI	CGCG	1 cut(s)	149
BstXI	CCANNNNNNTGG	2 cut(s)	77, 202
BsuRI	GGCC	3 cut(s)	59, 113, 140
BtsCI	GGATG	1 cut(s)	211
BtsI	GCAGTG	1 cut(s)	189
BtsIMutI	CAGTG	1 cut(s)	189
CfoI	GCGC	1 cut(s)	151
Cfr10I	RCCGGY	1 cut(s)	158
Cfr13I	GGNCC	1 cut(s)	111
CseI	GACGC	1 cut(s)	131
Csp6I	GTAC	1 cut(s)	67
CspAI	ACCGGT	1 cut(s)	158
CviJI	RGCY	8 cut(s)	32, 46, 59, 113, 140, 271, 281, 310
CviKI_1	RGCY	8 cut(s)	32, 46, 59, 113, 140, 271, 281, 310
CviQI	GTAC	1 cut(s)	67
DpnI	GATC	3 cut(s)	90, 266, 288
DpnII	GATC	3 cut(s)	88, 264, 286
DrdI	GACNNNNNNGTC	1 cut(s)	179
DseDI	GACNNNNNNGTC	1 cut(s)	179
Eco130I	CCWWGG	3 cut(s)	48, 195, 318
EcoRII	CCWGG	2 cut(s)	15, 69
EcoT14I	CCWWGG	3 cut(s)	48, 195, 318
ErhI	CCWWGG	3 cut(s)	48, 195, 318
FaiI	YATR	4 cut(s)	165, 186, 225, 291
FokI	GGATG	1 cut(s)	218
FspBI	CTAG	1 cut(s)	95
GlaI	GCGC	1 cut(s)	150
HaeIII	GGCC	3 cut(s)	59, 113, 140
HapII	CCGG	2 cut(s)	159, 210
HgaI	GACGC	1 cut(s)	131
HhaI	GCGC	1 cut(s)	151
Hin1I	GRCGYC	1 cut(s)	123
Hin6I	GCGC	1 cut(s)	149
HinP1I	GCGC	1 cut(s)	149
HinfI	GANTC	4 cut(s)	10, 167, 227, 341
HpaII	CCGG	2 cut(s)	159, 210
HphI	GGTGA	4 cut(s)	5, 34, 92, 307
Hpy166II	GTNNAC	1 cut(s)	253
Hpy188I	TCNGA	2 cut(s)	172, 232
Hpy188III	TCNNGA	3 cut(s)	95, 106, 284
Hpy8I	GTNNAC	1 cut(s)	253
Hpy99I	CGWCG	1 cut(s)	176
HpyAV	CCTTC	2 cut(s)	49, 112
HpyF10VI	GCNNNNNNNGC	1 cut(s)	146
Hsp92I	GRCGYC	1 cut(s)	123
HspAI	GCGC	1 cut(s)	149
Kzo9I	GATC	3 cut(s)	88, 264, 286
LmnI	GCTCC	2 cut(s)	37, 156
LpnPI	CCDG	9 cut(s)	2, 29, 56, 83, 122, 172, 223, 241, 269
LweI	GCATC	1 cut(s)	196
MaeI	CTAG	1 cut(s)	95
MalI	GATC	3 cut(s)	90, 266, 288
MboI	GATC	3 cut(s)	88, 264, 286
MboII	GAAGA	2 cut(s)	98, 274
MluCI	AATT	1 cut(s)	273
MlyI	GAGTC	1 cut(s)	350
MmeI	TCCRAC	3 cut(s)	168, 195, 198
MspI	CCGG	2 cut(s)	159, 210
MspR9I	CCNGG	2 cut(s)	17, 71
MvaI	CCWGG	2 cut(s)	17, 71
MvnI	CGCG	1 cut(s)	149
MwoI	GCNNNNNNNGC	1 cut(s)	146
NdeII	GATC	3 cut(s)	88, 264, 286
PfeI	GAWTC	3 cut(s)	10, 167, 227
PinAI	ACCGGT	1 cut(s)	158
PleI	GAGTC	1 cut(s)	349
PpsI	GAGTC	1 cut(s)	349
Psp6I	CCWGG	2 cut(s)	15, 69
PspGI	CCWGG	2 cut(s)	15, 69
PspPI	GGNCC	1 cut(s)	111
RsaI	GTAC	1 cut(s)	68
RsaNI	GTAC	1 cut(s)	67
Sau3AI	GATC	3 cut(s)	88, 264, 286
Sau96I	GGNCC	1 cut(s)	111
SchI	GAGTC	1 cut(s)	350
ScrFI	CCNGG	2 cut(s)	17, 71
SetI	ASST	6 cut(s)	24, 29, 34, 183, 201, 283
SfaNI	GCATC	1 cut(s)	196
SmlI	CTYRAG	1 cut(s)	106
SmoI	CTYRAG	1 cut(s)	106
Sse9I	AATT	1 cut(s)	273
SspMI	CTAG	1 cut(s)	95
StyD4I	CCNGG	2 cut(s)	15, 69
StyI	CCWWGG	3 cut(s)	48, 195, 318
TaqI	TCGA	2 cut(s)	267, 344
TasI	AATT	1 cut(s)	273
TfiI	GAWTC	3 cut(s)	10, 167, 227
TscAI	CASTG	1 cut(s)	196
TspDTI	ATGAA	1 cut(s)	339
TspRI	CASTG	1 cut(s)	196
XbaI	TCTAGA	1 cut(s)	94
XcmI	CCANNNNNNNNNTGG	1 cut(s)	133
XspI	CTAG	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.