pycom09g19130

Belongs to the DEAD box helicase family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
Physical Location & Seq
Forward (+)
19919884 .. 19921136
1253 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g19130.2

Sequence Viewer

Length: 1080 bp
ATGTCGAAGAGAAAATTCGGATTCGAAGGCTTTGGCATAAACAAGCAATCCACCTTCGATTTCGAGCGGTCACAGCAAGCCCCTCAGCGGCTCTACGTCCCTCCGTCGTCTCGCGGCGGAAACAGCCACGACAACTTCGAAGACACCGACCTCGACAACATTGATTACGACGACAACGATGGTTCCAATGATCCCGGGAATGACAACAGCCACGGCGACGGTGGCGGCGGTGATGAGGAAGTAGATCCTCTGGATGCTTTCATGGAGGGGATTCACGAGGAGGTGAGGTCAGCTCCGCCGCCGAAGCAGAAAGAGAAAGCCGAGAAGTACAAGGACGATGAGGAGGAGGATCACATGGAGAGTTTTCTGAGGGCTAAGAAGGACGTGATGCTTACGCTGGCATCGGATGCTTTAAACGCCGGATATGACTCCGACGAGGAGGTATATGCGGCCGCCAAGGCCGTCGATGCCGGGTTGTTGGAGTACGATTCGGATGATAATCCCATTGTTCTTGACAAGAGGAAGATCGAGCCAATTCCAGCTCTCGATCATAGTTCAATCGACTACGAGCCTTTTAATAAGGATTTTTACGAGGAGAAAGAGTCGATTTCAGGGATGAGTGAGGAGGATGTTTTTAAGTACAAGAAGAGCTTGGCCATCCGTGCGTCGGGTTTTGATGTGCCGAGGCCAGTCAAGACATTTGAAGACTCTGGATTTTCTTCACAGCTCATGACTGCCATAAAAAAACAAGACTATGTAAAGCCGACACCAATACAGTGCCAAGCTCTACCCATAGTTCTTTCCGGGAGAGATATCATTGGTATTGCGAAAACTGGTTCTGGAAAGACGGCTGCTTTTGTCCTTCCAATGATTGTCCACATTATGGATCAGCCGGAACTTCAAAAAGAAGAGGGTCCTATTGGAGTGATATGTGCACCTACTAGAGAGCTGGCGCACCAAATATACTTAGAGTCCAAGAAATTTGCTAAATCACATGGGATACGTGTCTCTGCTGTATATGGTGGAATGTCTAAGCTTGATCGATCAAGTTCAAAGAACTTAAGGCAGGATGTGAAATAG

Protein Analysis

360

Amino Acids

39.85

Weight (kDa)

4.78

Isoelectric Point (pI)

56.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 883
AccBSI CCGCTC 1 cut(s) 67
AccII CGCG 1 cut(s) 114
AclWI GGATC 4 cut(s) 185, 239, 357, 894
AcoI YGGCCR 2 cut(s) 450, 654
AcsI RAATTY 2 cut(s) 14, 980
AfaI GTAC 3 cut(s) 329, 485, 641
AfiI CCNNNNNNNGG 3 cut(s) 87, 667, 883
AflII CTTAAG 1 cut(s) 1060
AflIII ACRYGT 1 cut(s) 1003
AgsI TTSAA 4 cut(s) 558, 704, 902, 1053
AjiI CACGTC 1 cut(s) 385
AluBI AGCT 7 cut(s) 293, 542, 651, 727, 785, 949, 1036
AluI AGCT 7 cut(s) 293, 542, 651, 727, 785, 949, 1036
Alw21I GWGCWC 1 cut(s) 937
Alw26I GTCTC 2 cut(s) 114, 1012
Alw44I GTGCAC 1 cut(s) 933
AlwI GGATC 4 cut(s) 185, 239, 357, 894
Ama87I CYCGRG 1 cut(s) 194
AoxI GGCC 4 cut(s) 450, 459, 654, 686
ApaLI GTGCAC 1 cut(s) 933
ApeKI GCWGC 1 cut(s) 851
ApoI RAATTY 2 cut(s) 14, 980
AspLEI GCGC 1 cut(s) 955
AspS9I GGNCC 1 cut(s) 914
AsuC2I CCSGG 4 cut(s) 195, 196, 472, 805
AsuHPI GGTGA 2 cut(s) 242, 295
AsuII TTCGAA 2 cut(s) 24, 138
AvaI CYCGRG 1 cut(s) 194
AvaII GGWCC 1 cut(s) 914
BaeGI GKGCMC 1 cut(s) 937
BalI TGGCCA 1 cut(s) 656
BauI CACGAG 1 cut(s) 275
BbsI GAAGAC 2 cut(s) 147, 711
Bbv12I GWGCWC 1 cut(s) 937
BbvCI CCTCAGC 1 cut(s) 84
BbvI GCAGC 1 cut(s) 838
BccI CCATC 2 cut(s) 173, 665
BceAI ACGGC 3 cut(s) 229, 446, 864
BciVI GTATCC 1 cut(s) 993
BcnI CCSGG 4 cut(s) 195, 196, 472, 805
BcoDI GTCTC 2 cut(s) 114, 1012
BfaI CTAG 1 cut(s) 942
BfrI CTTAAG 1 cut(s) 1060
BfuI GTATCC 1 cut(s) 993
BglI GCCNNNNNGGC 1 cut(s) 458
BisI GCNGC 7 cut(s) 89, 115, 226, 299, 450, 453, 852
BlsI GCNGC 7 cut(s) 90, 116, 227, 300, 451, 454, 853
Bme1390I CCNGG 4 cut(s) 195, 196, 472, 805
Bme18I GGWCC 1 cut(s) 914
BmeT110I CYCGRG 1 cut(s) 194
BmgBI CACGTC 1 cut(s) 385
BmgT120I GGNCC 1 cut(s) 914
BmiI GGNNCC 2 cut(s) 184, 915
BmrFI CCNGG 4 cut(s) 195, 196, 472, 805
BmsI GCATC 5 cut(s) 244, 378, 397, 410, 457
BpiI GAAGAC 2 cut(s) 147, 711
BplI GAGNNNNNCTC 2 cut(s) 277, 309
Bpu10I CCTNAGC 1 cut(s) 84
Bpu14I TTCGAA 2 cut(s) 24, 138
BpuMI CCSGG 4 cut(s) 195, 196, 472, 805
Bsa29I ATCGAT 1 cut(s) 1042
BsaAI YACGTR 1 cut(s) 1004
BsaBI GATNNNNATC 1 cut(s) 498
BsaJI CCNNGG 4 cut(s) 194, 211, 456, 683
BsaXI ACNNNNNCTCC 4 cut(s) 272, 302, 587, 617
Bsc4I CCNNNNNNNGG 3 cut(s) 87, 667, 883
Bse1I ACTGG 2 cut(s) 689, 838
Bse8I GATNNNNATC 1 cut(s) 498
BseCI ATCGAT 1 cut(s) 1042
BseDI CCNNGG 4 cut(s) 194, 211, 456, 683
BseGI GGATG 7 cut(s) 259, 412, 499, 621, 634, 657, 1075
BseJI GATNNNNATC 1 cut(s) 498
BseLI CCNNNNNNNGG 3 cut(s) 87, 667, 883
BseMII CTCAG 2 cut(s) 98, 359
BseNI ACTGG 2 cut(s) 689, 838
BseRI GAGGAG 6 cut(s) 293, 356, 359, 452, 608, 638
BseSI GKGCMC 1 cut(s) 937
BseX3I CGGCCG 1 cut(s) 450
BseXI GCAGC 1 cut(s) 838
Bsh1236I CGCG 1 cut(s) 114
Bsh1285I CGRYCG 1 cut(s) 453
BshFI GGCC 4 cut(s) 452, 461, 656, 688
BshVI ATCGAT 1 cut(s) 1042
BsiEI CGRYCG 1 cut(s) 453
BsiHKAI GWGCWC 1 cut(s) 937
BsiHKCI CYCGRG 1 cut(s) 194
BsiSI CCGG 5 cut(s) 195, 420, 471, 804, 893
BslFI GGGAC 1 cut(s) 83
BslI CCNNNNNNNGG 3 cut(s) 87, 667, 883
BsmAI GTCTC 2 cut(s) 114, 1012
BsmBI CGTCTC 1 cut(s) 114
BsmFI GGGAC 1 cut(s) 83
BsnI GGCC 4 cut(s) 452, 461, 656, 688
BsoBI CYCGRG 1 cut(s) 194
Bsp119I TTCGAA 2 cut(s) 24, 138
Bsp1286I GDGCHC 1 cut(s) 937
Bsp143I GATC 8 cut(s) 190, 244, 349, 525, 547, 886, 1039, 1043
BspANI GGCC 4 cut(s) 452, 461, 656, 688
BspCNI CTCAG 2 cut(s) 97, 360
BspDI ATCGAT 1 cut(s) 1042
BspFNI CGCG 1 cut(s) 114
BspHI TCATGA 1 cut(s) 729
BspLI GGNNCC 2 cut(s) 184, 915
BspPI GGATC 4 cut(s) 185, 239, 357, 894
BspQI GCTCTTC 1 cut(s) 641
BspT104I TTCGAA 2 cut(s) 24, 138
BspTI CTTAAG 1 cut(s) 1060
BsrBI CCGCTC 1 cut(s) 67
BsrI ACTGG 2 cut(s) 689, 838
BssECI CCNNGG 4 cut(s) 194, 211, 456, 683
BssMI GATC 8 cut(s) 190, 244, 349, 525, 547, 886, 1039, 1043
BssSI CACGAG 1 cut(s) 275
BssT1I CCWWGG 1 cut(s) 456
Bst2BI CACGAG 1 cut(s) 275
Bst4CI ACNGT 2 cut(s) 221, 777
Bst6I CTCTTC 3 cut(s) 2, 641, 903
BstAFI CTTAAG 1 cut(s) 1060
BstAPI GCANNNNNTGC 1 cut(s) 407
BstBAI YACGTR 1 cut(s) 1004
BstBI TTCGAA 2 cut(s) 24, 138
BstC8I GCNNGC 3 cut(s) 78, 399, 951
BstDEI CTNAG 5 cut(s) 84, 368, 375, 967, 1032
BstDSI CCRYGG 1 cut(s) 211
BstF5I GGATG 7 cut(s) 259, 412, 499, 621, 634, 657, 1075
BstFNI CGCG 1 cut(s) 114
BstHHI GCGC 1 cut(s) 955
BstKTI GATC 8 cut(s) 193, 247, 352, 528, 550, 889, 1042, 1046
BstMAI GTCTC 2 cut(s) 114, 1012
BstMBI GATC 8 cut(s) 190, 244, 349, 525, 547, 886, 1039, 1043
BstMCI CGRYCG 1 cut(s) 453
BstMWI GCNNNNNNNGC 9 cut(s) 73, 123, 222, 304, 407, 416, 458, 467, 662
BstSCI CCNGG 4 cut(s) 193, 194, 470, 803
BstSLI GKGCMC 1 cut(s) 937
BstUI CGCG 1 cut(s) 114
BstV1I GCAGC 1 cut(s) 838
BstV2I GAAGAC 2 cut(s) 147, 711
BstX2I RGATCY 1 cut(s) 244
BstYI RGATCY 1 cut(s) 244
BstZI CGGCCG 1 cut(s) 450
Bsu15I ATCGAT 1 cut(s) 1042
BsuI GTATCC 1 cut(s) 993
BsuRI GGCC 4 cut(s) 452, 461, 656, 688
BsuTUI ATCGAT 1 cut(s) 1042
BtgI CCRYGG 1 cut(s) 211
BtrI CACGTC 1 cut(s) 385
BtsCI GGATG 7 cut(s) 259, 412, 499, 621, 634, 657, 1075
BtsIMutI CAGTG 1 cut(s) 782
Cac8I GCNNGC 3 cut(s) 78, 399, 951
CciI TCATGA 1 cut(s) 729
CciNI GCGGCCGC 1 cut(s) 450
CfoI GCGC 1 cut(s) 955
Cfr13I GGNCC 1 cut(s) 914
Cfr9I CCCGGG 1 cut(s) 194
ClaI ATCGAT 1 cut(s) 1042
CseI GACGC 1 cut(s) 654
Csp6I GTAC 3 cut(s) 328, 484, 640
CviAII CATG 4 cut(s) 262, 355, 730, 995
CviQI GTAC 3 cut(s) 328, 484, 640
DdeI CTNAG 5 cut(s) 84, 368, 375, 967, 1032
DpnI GATC 8 cut(s) 192, 246, 351, 527, 549, 888, 1041, 1045
DpnII GATC 8 cut(s) 190, 244, 349, 525, 547, 886, 1039, 1043
DraI TTTAAA 1 cut(s) 414
EaeI YGGCCR 2 cut(s) 450, 654
EagI CGGCCG 1 cut(s) 450
Eam1104I CTCTTC 3 cut(s) 2, 641, 903
EarI CTCTTC 3 cut(s) 2, 641, 903
EciI GGCGGA 2 cut(s) 132, 285
EclXI CGGCCG 1 cut(s) 450
Eco130I CCWWGG 1 cut(s) 456
Eco32I GATATC 1 cut(s) 814
Eco47I GGWCC 1 cut(s) 914
Eco52I CGGCCG 1 cut(s) 450
Eco88I CYCGRG 1 cut(s) 194
EcoO109I RGGNCCY 1 cut(s) 914
EcoRV GATATC 1 cut(s) 814
EcoT14I CCWWGG 1 cut(s) 456
ErhI CCWWGG 1 cut(s) 456
Esp3I CGTCTC 1 cut(s) 114
FaeI CATG 4 cut(s) 265, 358, 733, 998
FalI AAGNNNNNCTT 2 cut(s) 635, 667
FaqI GGGAC 1 cut(s) 83
FatI CATG 4 cut(s) 261, 354, 729, 994
Fnu4HI GCNGC 7 cut(s) 89, 115, 226, 299, 450, 453, 852
FokI GGATG 6 cut(s) 266, 419, 506, 628, 641, 644
Fsp4HI GCNGC 7 cut(s) 89, 115, 226, 299, 450, 453, 852
FspBI CTAG 1 cut(s) 942
GlaI GCGC 1 cut(s) 954
GluI GCNGC 7 cut(s) 89, 115, 226, 299, 450, 453, 852
HaeIII GGCC 4 cut(s) 452, 461, 656, 688
HapII CCGG 5 cut(s) 195, 420, 471, 804, 893
HgaI GACGC 1 cut(s) 654
HhaI GCGC 1 cut(s) 955
Hin1II CATG 4 cut(s) 265, 358, 733, 998
Hin6I GCGC 1 cut(s) 953
HinP1I GCGC 1 cut(s) 953
HindIII AAGCTT 1 cut(s) 1034
HinfI GANTC 7 cut(s) 21, 271, 428, 488, 602, 707, 971
HpaII CCGG 5 cut(s) 195, 420, 471, 804, 893
HphI GGTGA 2 cut(s) 242, 295
Hpy166II GTNNAC 2 cut(s) 877, 935
Hpy188I TCNGA 5 cut(s) 20, 369, 406, 433, 493
Hpy188III TCNNGA 8 cut(s) 251, 275, 512, 545, 694, 711, 730, 840
Hpy8I GTNNAC 2 cut(s) 877, 935
Hpy99I CGWCG 6 cut(s) 109, 173, 221, 437, 467, 670
HpyAV CCTTC 4 cut(s) 20, 64, 373, 872
HpyCH4III ACNGT 2 cut(s) 221, 777
HpyCH4IV ACGT 3 cut(s) 96, 384, 1003
HpyCH4V TGCA 1 cut(s) 935
HpyF10VI GCNNNNNNNGC 9 cut(s) 73, 123, 222, 304, 407, 416, 458, 467, 662
HpyF3I CTNAG 5 cut(s) 84, 368, 375, 967, 1032
HpySE526I ACGT 3 cut(s) 96, 384, 1003
Hsp92II CATG 4 cut(s) 265, 358, 733, 998
HspAI GCGC 1 cut(s) 953
Kzo9I GATC 8 cut(s) 190, 244, 349, 525, 547, 886, 1039, 1043
LguI GCTCTTC 1 cut(s) 641
LmnI GCTCC 1 cut(s) 298
Lsp1109I GCAGC 1 cut(s) 838
LweI GCATC 5 cut(s) 244, 378, 397, 410, 457
MaeI CTAG 1 cut(s) 942
MaeII ACGT 3 cut(s) 96, 384, 1003
MaeIII GTNAC 1 cut(s) 69
MalI GATC 8 cut(s) 192, 246, 351, 527, 549, 888, 1041, 1045
MbiI CCGCTC 1 cut(s) 67
MboI GATC 8 cut(s) 190, 244, 349, 525, 547, 886, 1039, 1043
MboII GAAGA 7 cut(s) 19, 152, 535, 658, 711, 716, 920
MflI RGATCY 1 cut(s) 244
MhlI GDGCHC 1 cut(s) 937
MlsI TGGCCA 1 cut(s) 656
MluCI AATT 3 cut(s) 14, 534, 980
MluNI TGGCCA 1 cut(s) 656
MlyI GAGTC 4 cut(s) 422, 611, 701, 980
MmeI TCCRAC 2 cut(s) 456, 459
Mox20I TGGCCA 1 cut(s) 656
MscI TGGCCA 1 cut(s) 656
MseI TTAA 4 cut(s) 413, 576, 636, 1061
Msp20I TGGCCA 1 cut(s) 656
MspA1I CMGCKG 1 cut(s) 88
MspCI CTTAAG 1 cut(s) 1060
MspI CCGG 5 cut(s) 195, 420, 471, 804, 893
MspR9I CCNGG 4 cut(s) 195, 196, 472, 805
MvnI CGCG 1 cut(s) 114
MwoI GCNNNNNNNGC 9 cut(s) 73, 123, 222, 304, 407, 416, 458, 467, 662
NciI CCSGG 4 cut(s) 195, 196, 472, 805
NdeII GATC 8 cut(s) 190, 244, 349, 525, 547, 886, 1039, 1043
NlaIII CATG 4 cut(s) 265, 358, 733, 998
NlaIV GGNNCC 2 cut(s) 184, 915
NmeAIII GCCGAG 2 cut(s) 346, 708
NmuCI GTSAC 1 cut(s) 69
NotI GCGGCCGC 1 cut(s) 450
NspV TTCGAA 2 cut(s) 24, 138
PagI TCATGA 1 cut(s) 729
PciSI GCTCTTC 1 cut(s) 641
PcsI WCGNNNNNNNCGW 3 cut(s) 135, 144, 174
PfeI GAWTC 3 cut(s) 21, 271, 488
PflMI CCANNNNNTGG 1 cut(s) 883
PfoI TCCNGGA 1 cut(s) 803
PkrI GCNGC 7 cut(s) 90, 116, 227, 300, 451, 454, 853
PleI GAGTC 4 cut(s) 422, 610, 701, 979
PpsI GAGTC 4 cut(s) 422, 610, 701, 979
Ppu21I YACGTR 1 cut(s) 1004
PpuMI RGGWCCY 1 cut(s) 914
Psp5II RGGWCCY 1 cut(s) 914
PspN4I GGNNCC 2 cut(s) 184, 915
PspPI GGNCC 1 cut(s) 914
PspPPI RGGWCCY 1 cut(s) 914
PsuI RGATCY 1 cut(s) 244
RsaI GTAC 3 cut(s) 329, 485, 641
RsaNI GTAC 3 cut(s) 328, 484, 640
SapI GCTCTTC 1 cut(s) 641
SaqAI TTAA 4 cut(s) 413, 576, 636, 1061
SatI GCNGC 7 cut(s) 89, 115, 226, 299, 450, 453, 852
Sau3AI GATC 8 cut(s) 190, 244, 349, 525, 547, 886, 1039, 1043
Sau96I GGNCC 1 cut(s) 914
SchI GAGTC 4 cut(s) 422, 611, 701, 980
ScrFI CCNGG 4 cut(s) 195, 196, 472, 805
SduI GDGCHC 1 cut(s) 937
SfaNI GCATC 5 cut(s) 244, 378, 397, 410, 457
SfiI GGCCNNNNNGGCC 1 cut(s) 458
SfuI TTCGAA 2 cut(s) 24, 138
SinI GGWCC 1 cut(s) 914
SmaI CCCGGG 1 cut(s) 196
SmlI CTYRAG 1 cut(s) 1060
SmoI CTYRAG 1 cut(s) 1060
Sse9I AATT 3 cut(s) 14, 534, 980
SspMI CTAG 1 cut(s) 942
StyD4I CCNGG 4 cut(s) 193, 194, 470, 803
StyI CCWWGG 1 cut(s) 456
TaaI ACNGT 2 cut(s) 221, 777
TaiI ACGT 3 cut(s) 99, 387, 1006
TasI AATT 3 cut(s) 14, 534, 980
TatI WGTACW 2 cut(s) 327, 639
TauI GCSGC 6 cut(s) 91, 117, 228, 301, 452, 455
TfiI GAWTC 3 cut(s) 21, 271, 488
Tru1I TTAA 4 cut(s) 413, 576, 636, 1061
Tru9I TTAA 4 cut(s) 413, 576, 636, 1061
TscAI CASTG 1 cut(s) 782
TseFI GTSAC 1 cut(s) 69
TseI GCWGC 1 cut(s) 851
Tsp45I GTSAC 1 cut(s) 69
TspDTI ATGAA 1 cut(s) 250
TspGWI ACGGA 2 cut(s) 93, 650
TspMI CCCGGG 1 cut(s) 194
TspRI CASTG 1 cut(s) 782
Van91I CCANNNNNTGG 1 cut(s) 883
Vha464I CTTAAG 1 cut(s) 1060
VneI GTGCAC 1 cut(s) 933
VpaK11BI GGWCC 1 cut(s) 914
XapI RAATTY 2 cut(s) 14, 980
XcmI CCANNNNNNNNNTGG 1 cut(s) 218
XmaI CCCGGG 1 cut(s) 194
XspI CTAG 1 cut(s) 942
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.