Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0003007

Physical Location & Seq

Genomic Coordinates Reverse (-)

43854578 .. 43856685

Gene Structure 2108 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG355800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGTCACCCCCGGTTAGCTTCTCCATGACCTCCGAGTCGAGCTCCGGGGACGAAAACTTCGACCCGAAGCCCAACCAGATTGCAAAGTGGGGCACTCCTGACCTCCGTTCGCTTCCCTTCCGATCGCCGCCACAGATCTCTGATCATCCTCAGTCGCAACAAGACCCACAGCGACTCTACGTCCCTCCCTCCTCCTCCTCCTCCTCTCGCGCTCACGGCCACGACAATTATGAAGACACCGACCTTGACAACATCGATTACGACGACATTGAAGCCGGAAGCACTCAAGGTAACGGCAGAGGAGACGCCGGTGGTGGCGGTGACGAAGAAGTCGATCCTCTCGATGCTTTCATGGAGGGGATTCACTGGGAGGTGAGGTCAGCTCCGCCGCCCAAGCCCAAGGAGAAGGCCGACAAGTACCAGGACGATGATGAGGAGGATCATCTAGAGAGTTTCTTGAGGGCCAAGAAGGACACCACGCTAACTTTGGCCTCCGACGCGCCCCACCCCGGCTATGATTCCGACGAGGAGGTCTATGCCGCTGCTAAGGTTGTGGATGCCGGAATGATGGAGTATGATTCCGATGACAATCCCGTTGTTGTGGACAGGAGGAAGATCGAGCCAATTTCAGCTCTGGATCATACTTCCATTGACTACGAGCCATTCACCAAGGACTTCTACGAGGAGAAAGAGTTGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

233

Amino Acids

25.88

Weight (kDa)

4.25

Isoelectric Point (pI)

64.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003007)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47330
fragaria_vesca	FvH4_1g27100 FvH4_1g27100 FvH4_1g27100
malus_domestica	MD00G1118300.v1.1 MD00G1118400.v1.1 MD09G1283400.v1.1 MD17G1274100.v1.1 MD17G1274800.v1.1 MD17G1275300.v1.1 MD17G1276500.v1.1
prunus_persica	Prupe.3G010900_v2.0.a1 Prupe.3G010900_v2.0.a1 Prupe.3G010900_v2.0.a1 Prupe.3G010900_v2.0.a1 Prupe.3G010900_v2.0.a1
pyrus_communis	pycom09g19130 pycom09g19140 pycom17g27210 pycom17g27330
rosa_chinensis	RchiOBHm_Chr3g0487421
rosa_laevigata	RLG00000023004
rosa_multiflora	Rmu_sc0008232.1_g000009 Rmu_sc0022533.1_g000001 Rmu_sc0031316.1_g000001
rosa_roxburghii	Rroxscaffold_6G00394790
rosa_rugosa	Rorug03G0234000
rosa_samantha	Rh2AG395100 Rh2CG381700 Rh3AG282000 Rh3BG317600 Rh3CG315700 Rh3DG313600 Rh4CG235900 Rh7AG337700 Rh7AG476200 Rh7CG355800
rosa_wichuraiana	Rw3G024970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	3 cut(s)	34, 329, 530
AccII	CGCG	2 cut(s)	210, 500
AciI	CCGC	5 cut(s)	128, 318, 386, 389, 540
AclWI	GGATC	3 cut(s)	329, 447, 645
AcoI	YGGCCR	1 cut(s)	217
AcyI	GRCGYC	1 cut(s)	306
AfaI	GTAC	1 cut(s)	419
AfiI	CCNNNNNNNGG	1 cut(s)	509
AgsI	TTSAA	1 cut(s)	272
AhdI	GACNNNNNGTC	1 cut(s)	179
AjnI	CCWGG	1 cut(s)	420
AluBI	AGCT	4 cut(s)	18, 42, 383, 632
AluI	AGCT	4 cut(s)	18, 42, 383, 632
Alw21I	GWGCWC	1 cut(s)	44
Alw26I	GTCTC	1 cut(s)	297
AlwI	GGATC	3 cut(s)	329, 447, 645
AoxI	GGCC	4 cut(s)	217, 408, 462, 489
ApeKI	GCWGC	1 cut(s)	542
ArsI	GACNNNNNNTTYG	2 cut(s)	41, 73
AspLEI	GCGC	2 cut(s)	212, 502
AspS9I	GGNCC	1 cut(s)	462
AsuC2I	CCSGG	3 cut(s)	11, 46, 510
AsuHPI	GGTGA	3 cut(s)	332, 385, 658
BaeGI	GKGCMC	1 cut(s)	95
BanII	GRGCYC	1 cut(s)	44
BbsI	GAAGAC	1 cut(s)	240
Bbv12I	GWGCWC	1 cut(s)	44
BbvI	GCAGC	1 cut(s)	529
BccI	CCATC	1 cut(s)	562
BceAI	ACGGC	2 cut(s)	232, 310
BciT130I	CCWGG	1 cut(s)	422
BclI	TGATCA	1 cut(s)	142
BcnI	CCSGG	3 cut(s)	11, 46, 510
BcoDI	GTCTC	1 cut(s)	297
BfaI	CTAG	1 cut(s)	446
BglII	AGATCT	1 cut(s)	135
BisI	GCNGC	4 cut(s)	128, 389, 540, 543
BlsI	GCNGC	4 cut(s)	129, 390, 541, 544
Bme1390I	CCNGG	4 cut(s)	11, 46, 422, 510
BmeRI	GACNNNNNGTC	1 cut(s)	179
BmgT120I	GGNCC	1 cut(s)	462
BmrFI	CCNGG	4 cut(s)	11, 46, 422, 510
BmrI	ACTGGG	1 cut(s)	376
BmsI	GCATC	2 cut(s)	334, 547
BmuI	ACTGGG	1 cut(s)	376
BpiI	GAAGAC	1 cut(s)	240
BplI	GAGNNNNNCTC	4 cut(s)	26, 58, 367, 399
Bpu10I	CCTNAGC	1 cut(s)	546
BpuEI	CTTGAG	2 cut(s)	270, 478
BpuMI	CCSGG	3 cut(s)	11, 46, 510
Bsa29I	ATCGAT	1 cut(s)	255
BsaBI	GATNNNNATC	1 cut(s)	588
BsaHI	GRCGYC	1 cut(s)	306
BsaJI	CCNNGG	5 cut(s)	9, 45, 399, 508, 669
BsaXI	ACNNNNNCTCC	3 cut(s)	362, 392, 677
Bsc4I	CCNNNNNNNGG	1 cut(s)	509
Bse118I	RCCGGY	1 cut(s)	308
Bse1I	ACTGG	1 cut(s)	371
Bse8I	GATNNNNATC	1 cut(s)	588
BseBI	CCWGG	1 cut(s)	422
BseCI	ATCGAT	1 cut(s)	255
BseDI	CCNNGG	5 cut(s)	9, 45, 399, 508, 669
BseGI	GGATG	2 cut(s)	145, 562
BseJI	GATNNNNATC	1 cut(s)	588
BseLI	CCNNNNNNNGG	1 cut(s)	509
BseMII	CTCAG	1 cut(s)	164
BseNI	ACTGG	1 cut(s)	371
BseRI	GAGGAG	9 cut(s)	181, 184, 187, 190, 193, 315, 449, 542, 698
BseSI	GKGCMC	1 cut(s)	95
BseXI	GCAGC	1 cut(s)	529
Bsh1236I	CGCG	2 cut(s)	210, 500
Bsh1285I	CGRYCG	1 cut(s)	125
BshFI	GGCC	4 cut(s)	219, 410, 464, 491
BshVI	ATCGAT	1 cut(s)	255
BsiEI	CGRYCG	1 cut(s)	125
BsiHKAI	GWGCWC	1 cut(s)	44
BsiSI	CCGG	6 cut(s)	11, 45, 276, 309, 510, 561
BslFI	GGGAC	2 cut(s)	62, 167
BslI	CCNNNNNNNGG	1 cut(s)	509
BsmAI	GTCTC	1 cut(s)	297
BsmBI	CGTCTC	1 cut(s)	297
BsmFI	GGGAC	2 cut(s)	62, 167
BsnI	GGCC	4 cut(s)	219, 410, 464, 491
Bsp1286I	GDGCHC	2 cut(s)	44, 95
Bsp143I	GATC	7 cut(s)	122, 135, 142, 334, 439, 615, 637
BspACI	CCGC	5 cut(s)	128, 318, 386, 389, 540
BspANI	GGCC	4 cut(s)	219, 410, 464, 491
BspCNI	CTCAG	1 cut(s)	163
BspDI	ATCGAT	1 cut(s)	255
BspFNI	CGCG	2 cut(s)	210, 500
BspPI	GGATC	3 cut(s)	329, 447, 645
BsrFI	RCCGGY	1 cut(s)	308
BsrI	ACTGG	1 cut(s)	371
BssAI	RCCGGY	1 cut(s)	308
BssECI	CCNNGG	5 cut(s)	9, 45, 399, 508, 669
BssMI	GATC	7 cut(s)	122, 135, 142, 334, 439, 615, 637
BssNI	GRCGYC	1 cut(s)	306
BssT1I	CCWWGG	2 cut(s)	399, 669
Bst2UI	CCWGG	1 cut(s)	422
BstACI	GRCGYC	1 cut(s)	306
BstDEI	CTNAG	2 cut(s)	150, 546
BstF5I	GGATG	2 cut(s)	145, 562
BstFNI	CGCG	2 cut(s)	210, 500
BstHHI	GCGC	2 cut(s)	212, 502
BstKTI	GATC	7 cut(s)	125, 138, 145, 337, 442, 618, 640
BstMAI	GTCTC	1 cut(s)	297
BstMBI	GATC	7 cut(s)	122, 135, 142, 334, 439, 615, 637
BstMCI	CGRYCG	1 cut(s)	125
BstMWI	GCNNNNNNNGC	3 cut(s)	216, 394, 497
BstNI	CCWGG	1 cut(s)	422
BstSCI	CCNGG	4 cut(s)	9, 44, 420, 508
BstSLI	GKGCMC	1 cut(s)	95
BstUI	CGCG	2 cut(s)	210, 500
BstV1I	GCAGC	1 cut(s)	529
BstV2I	GAAGAC	1 cut(s)	240
BstX2I	RGATCY	1 cut(s)	135
BstYI	RGATCY	1 cut(s)	135
Bsu15I	ATCGAT	1 cut(s)	255
BsuRI	GGCC	4 cut(s)	219, 410, 464, 491
BsuTUI	ATCGAT	1 cut(s)	255
BtsCI	GGATG	2 cut(s)	145, 562
BtsIMutI	CAGTG	1 cut(s)	364
CfoI	GCGC	2 cut(s)	212, 502
Cfr10I	RCCGGY	1 cut(s)	308
Cfr13I	GGNCC	1 cut(s)	462
ClaI	ATCGAT	1 cut(s)	255
CseI	GACGC	2 cut(s)	314, 506
Csp6I	GTAC	1 cut(s)	418
CviAII	CATG	2 cut(s)	25, 352
CviQI	GTAC	1 cut(s)	418
DdeI	CTNAG	2 cut(s)	150, 546
DpnI	GATC	7 cut(s)	124, 137, 144, 336, 441, 617, 639
DpnII	GATC	7 cut(s)	122, 135, 142, 334, 439, 615, 637
DrdI	GACNNNNNNGTC	3 cut(s)	34, 329, 530
DriI	GACNNNNNGTC	1 cut(s)	179
DseDI	GACNNNNNNGTC	3 cut(s)	34, 329, 530
EaeI	YGGCCR	1 cut(s)	217
Eam1105I	GACNNNNNGTC	1 cut(s)	179
EciI	GGCGGA	1 cut(s)	375
Ecl136II	GAGCTC	1 cut(s)	42
Eco130I	CCWWGG	2 cut(s)	399, 669
Eco24I	GRGCYC	1 cut(s)	44
Eco53kI	GAGCTC	1 cut(s)	42
EcoICRI	GAGCTC	1 cut(s)	42
EcoRII	CCWGG	1 cut(s)	420
EcoT14I	CCWWGG	2 cut(s)	399, 669
EcoT38I	GRGCYC	1 cut(s)	44
ErhI	CCWWGG	2 cut(s)	399, 669
Esp3I	CGTCTC	1 cut(s)	297
FaeI	CATG	2 cut(s)	28, 355
FaiI	YATR	7 cut(s)	26, 231, 353, 516, 537, 576, 642
FaqI	GGGAC	2 cut(s)	62, 167
FatI	CATG	2 cut(s)	24, 351
FbaI	TGATCA	1 cut(s)	142
Fnu4HI	GCNGC	4 cut(s)	128, 389, 540, 543
FokI	GGATG	2 cut(s)	132, 569
FriOI	GRGCYC	1 cut(s)	44
Fsp4HI	GCNGC	4 cut(s)	128, 389, 540, 543
FspBI	CTAG	1 cut(s)	446
GlaI	GCGC	2 cut(s)	211, 501
GluI	GCNGC	4 cut(s)	128, 389, 540, 543
HaeIII	GGCC	4 cut(s)	219, 410, 464, 491
HapII	CCGG	6 cut(s)	11, 45, 276, 309, 510, 561
HgaI	GACGC	2 cut(s)	314, 506
HhaI	GCGC	2 cut(s)	212, 502
Hin1I	GRCGYC	1 cut(s)	306
Hin1II	CATG	2 cut(s)	28, 355
Hin6I	GCGC	2 cut(s)	210, 500
HinP1I	GCGC	2 cut(s)	210, 500
HinfI	GANTC	5 cut(s)	35, 174, 361, 518, 578
HpaII	CCGG	6 cut(s)	11, 45, 276, 309, 510, 561
HphI	GGTGA	3 cut(s)	332, 385, 658
Hpy166II	GTNNAC	1 cut(s)	604
Hpy188I	TCNGA	6 cut(s)	34, 122, 142, 496, 523, 583
Hpy188III	TCNNGA	5 cut(s)	98, 341, 446, 457, 635
Hpy8I	GTNNAC	1 cut(s)	604
Hpy99I	CGWCG	3 cut(s)	266, 500, 527
HpyAV	CCTTC	3 cut(s)	127, 400, 463
HpyCH4IV	ACGT	1 cut(s)	180
HpyCH4V	TGCA	1 cut(s)	83
HpyF10VI	GCNNNNNNNGC	3 cut(s)	216, 394, 497
HpyF3I	CTNAG	2 cut(s)	150, 546
HpySE526I	ACGT	1 cut(s)	180
Hsp92I	GRCGYC	1 cut(s)	306
Hsp92II	CATG	2 cut(s)	28, 355
HspAI	GCGC	2 cut(s)	210, 500
Ksp22I	TGATCA	1 cut(s)	142
Kzo9I	GATC	7 cut(s)	122, 135, 142, 334, 439, 615, 637
LmnI	GCTCC	2 cut(s)	47, 388
Lsp1109I	GCAGC	1 cut(s)	529
LweI	GCATC	2 cut(s)	334, 547
MaeI	CTAG	1 cut(s)	446
MaeII	ACGT	1 cut(s)	180
MaeIII	GTNAC	3 cut(s)	3, 290, 320
MalI	GATC	7 cut(s)	124, 137, 144, 336, 441, 617, 639
MboI	GATC	7 cut(s)	122, 135, 142, 334, 439, 615, 637
MboII	GAAGA	3 cut(s)	245, 338, 625
MflI	RGATCY	1 cut(s)	135
MhlI	GDGCHC	2 cut(s)	44, 95
MluCI	AATT	2 cut(s)	226, 624
MlyI	GAGTC	2 cut(s)	44, 168
MmeI	TCCRAC	2 cut(s)	519, 546
MspA1I	CMGCKG	1 cut(s)	542
MspI	CCGG	6 cut(s)	11, 45, 276, 309, 510, 561
MspR9I	CCNGG	4 cut(s)	11, 46, 422, 510
MvaI	CCWGG	1 cut(s)	422
MvnI	CGCG	2 cut(s)	210, 500
MwoI	GCNNNNNNNGC	3 cut(s)	216, 394, 497
NciI	CCSGG	3 cut(s)	11, 46, 510
NdeII	GATC	7 cut(s)	122, 135, 142, 334, 439, 615, 637
NlaIII	CATG	2 cut(s)	28, 355
NmuCI	GTSAC	2 cut(s)	3, 320
PcsI	WCGNNNNNNNCGW	4 cut(s)	57, 261, 330, 339
PfeI	GAWTC	3 cut(s)	361, 518, 578
PkrI	GCNGC	4 cut(s)	129, 390, 541, 544
Ple19I	CGATCG	1 cut(s)	125
PleI	GAGTC	2 cut(s)	43, 168
PpsI	GAGTC	2 cut(s)	43, 168
Psp124BI	GAGCTC	1 cut(s)	44
Psp6I	CCWGG	1 cut(s)	420
PspGI	CCWGG	1 cut(s)	420
PspPI	GGNCC	1 cut(s)	462
PsuI	RGATCY	1 cut(s)	135
PvuI	CGATCG	1 cut(s)	125
RsaI	GTAC	1 cut(s)	419
RsaNI	GTAC	1 cut(s)	418
SacI	GAGCTC	1 cut(s)	44
SatI	GCNGC	4 cut(s)	128, 389, 540, 543
Sau3AI	GATC	7 cut(s)	122, 135, 142, 334, 439, 615, 637
Sau96I	GGNCC	1 cut(s)	462
SchI	GAGTC	2 cut(s)	44, 168
ScrFI	CCNGG	4 cut(s)	11, 46, 422, 510
SduI	GDGCHC	2 cut(s)	44, 95
SfaNI	GCATC	2 cut(s)	334, 547
SgrAI	CRCCGGYG	1 cut(s)	308
SmlI	CTYRAG	2 cut(s)	285, 457
SmoI	CTYRAG	2 cut(s)	285, 457
Sse9I	AATT	2 cut(s)	226, 624
SsiI	CCGC	5 cut(s)	128, 318, 386, 389, 540
SspMI	CTAG	1 cut(s)	446
SstI	GAGCTC	1 cut(s)	44
StyD4I	CCNGG	4 cut(s)	9, 44, 420, 508
StyI	CCWWGG	2 cut(s)	399, 669
TaiI	ACGT	1 cut(s)	183
TaqI	TCGA	6 cut(s)	38, 60, 255, 333, 342, 618
TasI	AATT	2 cut(s)	226, 624
TauI	GCSGC	3 cut(s)	130, 391, 542
TfiI	GAWTC	3 cut(s)	361, 518, 578
TscAI	CASTG	1 cut(s)	371
TseFI	GTSAC	2 cut(s)	3, 320
TseI	GCWGC	1 cut(s)	542
Tsp45I	GTSAC	2 cut(s)	3, 320
TspDTI	ATGAA	2 cut(s)	246, 340
TspGWI	ACGGA	1 cut(s)	95
TspRI	CASTG	1 cut(s)	371
XbaI	TCTAGA	1 cut(s)	445
XcmI	CCANNNNNNNNNTGG	1 cut(s)	484
XspI	CTAG	1 cut(s)	446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.