Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0000936

Physical Location & Seq

Genomic Coordinates Reverse (-)

44143714 .. 44145252

Gene Structure 1539 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1185500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGTTTGTTGATGATGCCCTTGGGTTTTGTTCCATTAACATCAGCGATTTTAGGAATGGCGGGAGGCATGACATGTGGTTGCCTCTTCAGAAGGCTGGGAGGCTGCATCTTGCAGTAACCATACTTGACGAAAATGGGAAGAAAAATCTTCAGGGGTTTGACTTGAACCGCTTTCATACACAGGGAGATGACTCTCCAGATGTTCAGGAAAAGCCAGATGTGAAAGAACGAAGAAATTCCTTTGCCAGTGACACTGGTAATAAAGGTTCCTTCTCATCTATATCCTCAGGGAAATCTGCAAAAGTAGCAGATCATTTTGAGCCGATTGATATTGATGGCCAGAAAGAGACTGGTATATGGGTCCATCACCCAGGAAGTGAAGTTTCACAAACTTGGGAGGCCAGAAAAGGAAAGGGTCGACGACTTAATACCCAAATTCAAGGGGAGCCTAATGGTAGTGGCATTGGATCCCAAGTTAATGATACCAGCAGCACTGATGAAAATCCTGAAGATAAACGGCGAATGGCATCAGTTCGCAGGGGTCTGCATAAGATCGGTTCGGTGTTCCATAGGAATTCCAAGGAGGATAATTCATGCACCTTTAAAGAGCCACTCGAAACCCCACGCGTGAATCTAAGGGCAGTTAATGAAAATAATATTGGTGTGAGATATGTTGTGGAAGACGGCCTTTGTAGCTCTCCTTCTGGCAAGACAAATTCAAAAGGAGGGGCTTTAAGTTCTGGAGAGAGTGGTTCGGATAGCCCAGGAAAGGGCAATGTTAAAGACATGGCAAAGAGTCTCTACAAAAGTGCTGAAAGGTCGGTAAAGCATGCACTTTCACGGAAAGGTTCTAGAAAATTCGACCTCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005886 GO:0012505 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00290 ko00650 ko00660 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00290 map00650 map00660 map00770 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

C2 SMP_LBD

Protein Analysis

291

Amino Acids

31.76

Weight (kDa)

9.02

Isoelectric Point (pI)

39.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000936)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53590 AT3G14590 AT3G14590 AT3G14590 AT3G14590 AT3G14590
fragaria_vesca	FvH4_3g16980 FvH4_3g16980 FvH4_3g16980 FvH4_3g16980 FvH4_3g16980 FvH4_3g17020 FvH4_3g17020 FvH4_3g17020 FvH4_3g17020 FvH4_3g17020 FvH4_3g17020
malus_domestica	MD00G1185500.v1.1 MD00G1185600.v1.1 MD03G1254200.v1.1 MD03G1254900.v1.1 MD11G1275800.v1.1 MD11G1276000.v1.1
prunus_persica	Prupe.4G152200_v2.0.a1 Prupe.4G152200_v2.0.a1 Prupe.4G152300_v2.0.a1 Prupe.4G152300_v2.0.a1 Prupe.4G152300_v2.0.a1 Prupe.4G152300_v2.0.a1 Prupe.4G152300_v2.0.a1 Prupe.4G152300_v2.0.a1 Prupe.4G152300_v2.0.a1
pyrus_communis	pycom03g20170 pycom03g20190 pycom11g24400
rosa_chinensis	RchiOBHm_Chr2g0135571 RchiOBHm_Chr2g0159501 RchiOBHm_Chr2g0159511 RchiOBHm_Chr5g0028301 RchiOBHm_Chr5g0028351 RchiOBHm_Chr5g0039631
rosa_laevigata	RLG00000033080 RLG00000033088
rosa_multiflora	Rmu_sc0001020.1_g000001 Rmu_sc0002481.1_g000040 Rmu_sc0008526.1_g000010
rosa_roxburghii	Rroxscaffold_1G00051350 Rroxscaffold_1G00051420 Rroxscaffold_1G00051430
rosa_rugosa	Rorug05G0105600
rosa_samantha	Rh1AG292900 Rh4AG059100 Rh5AG199100 Rh5AG199600 Rh5BG197700 Rh5BG198100 Rh5CG217400 Rh5CG218100 Rh5DG199400 Rh5DG200000 Rh7DG370100
rosa_wichuraiana	Rw4G016870 Rw5G018160 Rw5G018190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	418
AccII	CGCG	1 cut(s)	627
AciI	CCGC	2 cut(s)	60, 169
AclWI	GGATC	2 cut(s)	462, 475
AcoI	YGGCCR	1 cut(s)	337
AcsI	RAATTY	5 cut(s)	235, 435, 574, 715, 857
AcuI	CTGAAG	3 cut(s)	71, 134, 528
AfiI	CCNNNNNNNGG	2 cut(s)	769, 770
AflIII	ACRYGT	2 cut(s)	72, 625
AgsI	TTSAA	3 cut(s)	166, 440, 720
AjnI	CCWGG	2 cut(s)	370, 763
AjuI	GAANNNNNNNTTGG	2 cut(s)	642, 674
AluBI	AGCT	1 cut(s)	696
AluI	AGCT	1 cut(s)	696
Alw26I	GTCTC	2 cut(s)	341, 803
AlwI	GGATC	2 cut(s)	462, 475
AoxI	GGCC	3 cut(s)	337, 399, 685
ApeKI	GCWGC	2 cut(s)	103, 489
ApoI	RAATTY	5 cut(s)	235, 435, 574, 715, 857
Asp700I	GAANNNNTTC	1 cut(s)	235
AspS9I	GGNCC	1 cut(s)	361
AsuHPI	GGTGA	1 cut(s)	359
AvaII	GGWCC	1 cut(s)	361
AxyI	CCTNAGG	1 cut(s)	286
BalI	TGGCCA	1 cut(s)	339
BamHI	GGATCC	1 cut(s)	467
BarI	GAAGNNNNNNTAC	2 cut(s)	685, 717
BbsI	GAAGAC	1 cut(s)	687
BbvI	GCAGC	2 cut(s)	90, 501
BccI	CCATC	2 cut(s)	329, 372
BceAI	ACGGC	2 cut(s)	533, 700
BciT130I	CCWGG	2 cut(s)	372, 765
BcoDI	GTCTC	2 cut(s)	341, 803
BfaI	CTAG	1 cut(s)	852
BisI	GCNGC	2 cut(s)	104, 490
BlsI	GCNGC	2 cut(s)	105, 491
Bme1390I	CCNGG	2 cut(s)	372, 765
Bme18I	GGWCC	1 cut(s)	361
BmgT120I	GGNCC	1 cut(s)	361
BmiI	GGNNCC	4 cut(s)	268, 362, 447, 469
BmrFI	CCNGG	2 cut(s)	372, 765
BmsI	GCATC	3 cut(s)	4, 115, 536
BpiI	GAAGAC	1 cut(s)	687
BpmI	CTGGAG	2 cut(s)	180, 762
BsaBI	GATNNNNATC	1 cut(s)	501
BsaJI	CCNNGG	4 cut(s)	19, 370, 579, 763
Bsc4I	CCNNNNNNNGG	2 cut(s)	769, 770
Bse1I	ACTGG	3 cut(s)	246, 259, 355
Bse21I	CCTNAGG	1 cut(s)	286
Bse3DI	GCAATG	1 cut(s)	781
Bse8I	GATNNNNATC	1 cut(s)	501
BseBI	CCWGG	2 cut(s)	372, 765
BseDI	CCNNGG	4 cut(s)	19, 370, 579, 763
BseJI	GATNNNNATC	1 cut(s)	501
BseLI	CCNNNNNNNGG	2 cut(s)	769, 770
BseMI	GCAATG	1 cut(s)	781
BseMII	CTCAG	1 cut(s)	300
BseNI	ACTGG	3 cut(s)	246, 259, 355
BseXI	GCAGC	2 cut(s)	90, 501
BseYI	CCCAGC	1 cut(s)	95
Bsh1236I	CGCG	1 cut(s)	627
BshFI	GGCC	3 cut(s)	339, 401, 687
BslI	CCNNNNNNNGG	2 cut(s)	769, 770
BsmAI	GTCTC	2 cut(s)	341, 803
BsnI	GGCC	3 cut(s)	339, 401, 687
Bsp143I	GATC	3 cut(s)	310, 467, 552
BspACI	CCGC	2 cut(s)	60, 169
BspANI	GGCC	3 cut(s)	339, 401, 687
BspCNI	CTCAG	1 cut(s)	299
BspFNI	CGCG	1 cut(s)	627
BspLI	GGNNCC	4 cut(s)	268, 362, 447, 469
BspPI	GGATC	2 cut(s)	462, 475
BsrDI	GCAATG	1 cut(s)	781
BsrI	ACTGG	3 cut(s)	246, 259, 355
BssECI	CCNNGG	4 cut(s)	19, 370, 579, 763
BssMI	GATC	3 cut(s)	310, 467, 552
BssT1I	CCWWGG	2 cut(s)	19, 579
Bst2UI	CCWGG	2 cut(s)	372, 765
Bst6I	CTCTTC	1 cut(s)	90
BstC8I	GCNNGC	1 cut(s)	831
BstDEI	CTNAG	2 cut(s)	286, 635
BstFNI	CGCG	1 cut(s)	627
BstKTI	GATC	3 cut(s)	313, 470, 555
BstMAI	GTCTC	2 cut(s)	341, 803
BstMBI	GATC	3 cut(s)	310, 467, 552
BstMWI	GCNNNNNNNGC	2 cut(s)	305, 693
BstNI	CCWGG	2 cut(s)	372, 765
BstNSI	RCATGY	2 cut(s)	76, 833
BstSCI	CCNGG	2 cut(s)	370, 763
BstUI	CGCG	1 cut(s)	627
BstV1I	GCAGC	2 cut(s)	90, 501
BstV2I	GAAGAC	1 cut(s)	687
BstX2I	RGATCY	1 cut(s)	467
BstYI	RGATCY	1 cut(s)	467
Bsu36I	CCTNAGG	1 cut(s)	286
BsuRI	GGCC	3 cut(s)	339, 401, 687
BtsIMutI	CAGTG	3 cut(s)	252, 253, 492
Cac8I	GCNNGC	1 cut(s)	831
Cfr13I	GGNCC	1 cut(s)	361
CviAII	CATG	5 cut(s)	68, 73, 594, 787, 830
DdeI	CTNAG	2 cut(s)	286, 635
DpnI	GATC	3 cut(s)	312, 469, 554
DpnII	GATC	3 cut(s)	310, 467, 552
DraI	TTTAAA	1 cut(s)	604
EaeI	YGGCCR	1 cut(s)	337
Eam1104I	CTCTTC	1 cut(s)	90
EarI	CTCTTC	1 cut(s)	90
Eco130I	CCWWGG	2 cut(s)	19, 579
Eco47I	GGWCC	1 cut(s)	361
Eco57I	CTGAAG	3 cut(s)	71, 134, 528
Eco81I	CCTNAGG	1 cut(s)	286
EcoRI	GAATTC	1 cut(s)	574
EcoRII	CCWGG	2 cut(s)	370, 763
EcoT14I	CCWWGG	2 cut(s)	19, 579
ErhI	CCWWGG	2 cut(s)	19, 579
FaeI	CATG	5 cut(s)	71, 76, 597, 790, 833
FalI	AAGNNNNNCTT	2 cut(s)	672, 704
FatI	CATG	5 cut(s)	67, 72, 593, 786, 829
FauI	CCCGC	1 cut(s)	53
FblI	GTMKAC	1 cut(s)	418
Fnu4HI	GCNGC	2 cut(s)	104, 490
Fsp4HI	GCNGC	2 cut(s)	104, 490
FspBI	CTAG	1 cut(s)	852
GluI	GCNGC	2 cut(s)	104, 490
GsaI	CCCAGC	1 cut(s)	99
GsuI	CTGGAG	2 cut(s)	180, 762
HaeIII	GGCC	3 cut(s)	339, 401, 687
Hin1II	CATG	5 cut(s)	71, 76, 597, 790, 833
HincII	GTYRAC	1 cut(s)	419
HindII	GTYRAC	1 cut(s)	419
HinfI	GANTC	3 cut(s)	191, 631, 796
HphI	GGTGA	1 cut(s)	359
Hpy166II	GTNNAC	1 cut(s)	419
Hpy188I	TCNGA	3 cut(s)	90, 757, 872
Hpy188III	TCNNGA	5 cut(s)	197, 206, 506, 741, 852
Hpy8I	GTNNAC	1 cut(s)	419
Hpy99I	CGWCG	1 cut(s)	423
HpyAV	CCTTC	3 cut(s)	85, 280, 711
HpyCH4V	TGCA	6 cut(s)	106, 113, 299, 547, 597, 833
HpyF10VI	GCNNNNNNNGC	2 cut(s)	305, 693
HpyF3I	CTNAG	2 cut(s)	286, 635
Hsp92II	CATG	5 cut(s)	71, 76, 597, 790, 833
Kzo9I	GATC	3 cut(s)	310, 467, 552
LmnI	GCTCC	1 cut(s)	445
Lsp1109I	GCAGC	2 cut(s)	90, 501
LweI	GCATC	3 cut(s)	4, 115, 536
MaeI	CTAG	1 cut(s)	852
MaeIII	GTNAC	2 cut(s)	115, 248
MalI	GATC	3 cut(s)	312, 469, 554
MboI	GATC	3 cut(s)	310, 467, 552
MboII	GAAGA	7 cut(s)	77, 140, 151, 243, 521, 692, 859
MflI	RGATCY	1 cut(s)	467
MlsI	TGGCCA	1 cut(s)	339
MluCI	AATT	6 cut(s)	235, 435, 574, 589, 715, 857
MluI	ACGCGT	1 cut(s)	625
MluNI	TGGCCA	1 cut(s)	339
MlyI	GAGTC	2 cut(s)	185, 805
MnlI	CCTC	7 cut(s)	57, 93, 93, 295, 391, 577, 719
Mox20I	TGGCCA	1 cut(s)	339
MroXI	GAANNNNTTC	1 cut(s)	235
MscI	TGGCCA	1 cut(s)	339
MseI	TTAA	7 cut(s)	36, 426, 477, 603, 645, 734, 780
Msp20I	TGGCCA	1 cut(s)	339
MspR9I	CCNGG	2 cut(s)	372, 765
MvaI	CCWGG	2 cut(s)	372, 765
MvnI	CGCG	1 cut(s)	627
MwoI	GCNNNNNNNGC	2 cut(s)	305, 693
NdeII	GATC	3 cut(s)	310, 467, 552
NlaIII	CATG	5 cut(s)	71, 76, 597, 790, 833
NlaIV	GGNNCC	4 cut(s)	268, 362, 447, 469
NmuCI	GTSAC	1 cut(s)	248
NspI	RCATGY	2 cut(s)	76, 833
PaeI	GCATGC	1 cut(s)	833
PciI	ACATGT	1 cut(s)	72
PdmI	GAANNNNTTC	1 cut(s)	235
PfeI	GAWTC	1 cut(s)	631
PkrI	GCNGC	2 cut(s)	105, 491
PleI	GAGTC	2 cut(s)	185, 804
PpsI	GAGTC	2 cut(s)	185, 804
PscI	ACATGT	1 cut(s)	72
Psp6I	CCWGG	2 cut(s)	370, 763
PspFI	CCCAGC	1 cut(s)	95
PspGI	CCWGG	2 cut(s)	370, 763
PspN4I	GGNNCC	4 cut(s)	268, 362, 447, 469
PspPI	GGNCC	1 cut(s)	361
PsrI	GAACNNNNNNTAC	2 cut(s)	250, 282
PsuI	RGATCY	1 cut(s)	467
SalI	GTCGAC	1 cut(s)	417
SaqAI	TTAA	7 cut(s)	36, 426, 477, 603, 645, 734, 780
SatI	GCNGC	2 cut(s)	104, 490
Sau3AI	GATC	3 cut(s)	310, 467, 552
Sau96I	GGNCC	1 cut(s)	361
SchI	GAGTC	2 cut(s)	185, 805
ScrFI	CCNGG	2 cut(s)	372, 765
SetI	ASST	6 cut(s)	268, 602, 698, 821, 850, 867
SfaNI	GCATC	3 cut(s)	4, 115, 536
SinI	GGWCC	1 cut(s)	361
SphI	GCATGC	1 cut(s)	833
Sse9I	AATT	6 cut(s)	235, 435, 574, 589, 715, 857
SsiI	CCGC	2 cut(s)	60, 169
SspI	AATATT	1 cut(s)	658
SspMI	CTAG	1 cut(s)	852
StyD4I	CCNGG	2 cut(s)	370, 763
StyI	CCWWGG	2 cut(s)	19, 579
TaqI	TCGA	3 cut(s)	418, 615, 861
TasI	AATT	6 cut(s)	235, 435, 574, 589, 715, 857
TfiI	GAWTC	1 cut(s)	631
Tru1I	TTAA	7 cut(s)	36, 426, 477, 603, 645, 734, 780
Tru9I	TTAA	7 cut(s)	36, 426, 477, 603, 645, 734, 780
TscAI	CASTG	3 cut(s)	253, 259, 499
TseFI	GTSAC	1 cut(s)	248
TseI	GCWGC	2 cut(s)	103, 489
Tsp45I	GTSAC	1 cut(s)	248
TspDTI	ATGAA	4 cut(s)	164, 513, 582, 663
TspGWI	ACGGA	1 cut(s)	856
TspRI	CASTG	3 cut(s)	253, 259, 499
VpaK11BI	GGWCC	1 cut(s)	361
XapI	RAATTY	5 cut(s)	235, 435, 574, 715, 857
XbaI	TCTAGA	1 cut(s)	851
XceI	RCATGY	2 cut(s)	76, 833
XcmI	CCANNNNNNNNNTGG	1 cut(s)	347
XmiI	GTMKAC	1 cut(s)	418
XmnI	GAANNNNTTC	1 cut(s)	235
XspI	CTAG	1 cut(s)	852

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.