Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000936

Physical Location & Seq

Genomic Coordinates Reverse (-)

22249268 .. 22256635

Gene Structure 7368 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG200000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2241 bp

ATGGATATTACAGAGGTCACACTGATACACCATGTGGGCCTTGTGTTAGCTCTGCTTTGGTTGCTCTCTCACTACAATTGCTGCCACGCATTGGCATACTTTCTCTCTCTGATTTATCTCTTTGTGGTTCATGAGCGGTATGTTATGCGACTGCGGAAAAAACTACAATTCGAGGAAAGAAAGCAGGGGAATCAGAGAAGGGTACTTTCTGATTCTGAAACAGTGCGTTGGTTGAACCATGCAGTTGAAAAGATATGGCCTATATGTATGGAACAGATTGCTTCCCAGAGAGTTCTCCTCCCCATCATACCTTGGTTTTTGGAGAAGTACAAACCATGGACTGTTAGTAAAGGTGTAGTTCAGCACCTTTATTTGGGAAGGAATGCACCCATGTTCACAGAGATGAGAGTTCTCCGCCAGTCTACTGGTGATGACCATTTGGTTCTGGAGTTGGGAATGAATTTTCTGACAGCTGATGATATGCTTGGAATACTTGCTGTCAAGCTAAAAAAAAGGCTGGGCTTTGGAATTTGGGCAAAATTGCATATTACCGGTATGCATGTTGAAGGGAAGGTCATGATTGGGGTGAAGTTCCTTCGCAAGTGGCCTTTCCTTGGCCGTGTGCGGTTATGCTTTGTCGAGCCTCCATATTTTCAAATGACCGTTAAGCCTATTTTTACTCGTGGGCTTGATGTTACAGAAGTCCCAGGGATTGATGGATGGCTGGATAAGCTTCTCTCAATTGCCTTTGAGCAGACACTTGTTCAGGTATTTGGTAAGCTTGTCTACATTGCCTTGAAGAAGACCCTTATTCAGCCTAATATGCTGGTTGTTGACATGGAGAAATTCACTTCACCGGAACAGGAAAATTGGTTCTCTGTGGATGAGAAGGAGCCTGTTGGGCATCTCAAAGTAGAAGTTATTGAAGCATCTGACATGAAAGCCTCCGACTTAAATGGATTTTCTGACCCTTATGTGAAGGGCCAATTCGGCGTTTACCAATTCAAAACTAAGATACAAAAGAAAACGCTGACCCCAAAATGGTTTGAGGAATTTAAGATCCCGATTATTACATGGGATTCACCTAATGTGCTAGCTATTGAAGTTCATGACAGAGACATTTTTGTTGATGATACCCTTGGAAACTGTTCCATTAACATCGGTGACCTTAGGGATGGTGTGAGACATGACATGTGGTTGCCTCTTCAGAACATCAAAACAGCAGGGAGGCTGCATCTTGCAATAACTGTGCTTGAAGACAATGGGGAGAGCAGCGATCCTCCAGATGTTCGGGAATCGAAAATGCCAAATATGGAAGATAAAAGAAATTCCTTTTCCAGTGAGACTGCTAATAAAAATTCCTTCTCGTCTGTCTCATCTGAGAAATCTCCTAGGGTGGCAGATAATTATGAGCCCATTGATGTTGAAGGGCAAAAAGAAACTGGTATATGGGTCCATCACCCAGGAAGTGAAGTTTCACAAACTTGGGAGGCTAGAAAAGGAAAGGGTCGACGTCTTAGTACCCAAATTCAAGGGGAGCCTAATGGGAGCAGCGTCACTGATGAAACTCAGGATGATAAACATCCAATGCAATCAGTTCGCCGGGGTCTACGTAAACTTGGTTCAGTATTTCAGAAGAATCCCAAAAAGGAGGATAATTCATGCAGTTTTACAGAGTCTGTCCAGAGCCCAGTTACTCCACGTGTCAATCTAAGGGCAATTAATGAAAAGGACATTGCGGTAAAATATGTTGTGGAAGATGAAATTTCTGGCAAAGTTTCAAAAGAAGGGGCTTCAAGTTCTGGAGAGAGTAGCTCAGGTAGCCCAGGAAAGGGCAAGGTGAAAGGCATGGCAAAGAGTTTCTTTAAACATGCTGAAAGATCAGTAAAGCATGCACTTTCACGTAAAGGTTCTAGAAAGTCACAGACAGATTCTTGTGAAAGAGAAATTATAGCAGGTTCCGACTCTTCTGACGATGATGATACTCCTCCCTCCCCAATAGTTGAAATGATACCAGTTGTCTCCAGGGACATACCTCATCCCCCTGTTAATGATTCGTTCAAGTCAGATGAGCATTTGACTCAGCTGCATGCAAGTGCTCTAAGTAACATTCCAGAGGACACTGAGGATTCGGTGAAGAAGGTTGAACCTGAAGACACAGAAAAGACGCTTGAGAAGCCGGATGACCCTGAAAAAAATAATGAGGGATTGCCTGAGCCGTTAAAAGTTGAAGCTAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005886 GO:0012505 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00290 ko00650 ko00660 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00290 map00650 map00660 map00770 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

C2 SMP_LBD

Protein Analysis

746

Amino Acids

84.4

Weight (kDa)

6.3

Isoelectric Point (pI)

39.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SMP_MUG190-like	PF25669	175 - 252	2.2e-06	MUG190-like SMP domain
C2	PF00168	301 - 402	1.8e-20	C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000936)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53590 AT3G14590 AT3G14590 AT3G14590 AT3G14590 AT3G14590
fragaria_vesca	FvH4_3g16980 FvH4_3g16980 FvH4_3g16980 FvH4_3g16980 FvH4_3g16980 FvH4_3g17020 FvH4_3g17020 FvH4_3g17020 FvH4_3g17020 FvH4_3g17020 FvH4_3g17020
malus_domestica	MD00G1185500.v1.1 MD00G1185600.v1.1 MD03G1254200.v1.1 MD03G1254900.v1.1 MD11G1275800.v1.1 MD11G1276000.v1.1
prunus_persica	Prupe.4G152200_v2.0.a1 Prupe.4G152200_v2.0.a1 Prupe.4G152300_v2.0.a1 Prupe.4G152300_v2.0.a1 Prupe.4G152300_v2.0.a1 Prupe.4G152300_v2.0.a1 Prupe.4G152300_v2.0.a1 Prupe.4G152300_v2.0.a1 Prupe.4G152300_v2.0.a1
pyrus_communis	pycom03g20170 pycom03g20190 pycom11g24400
rosa_chinensis	RchiOBHm_Chr2g0135571 RchiOBHm_Chr2g0159501 RchiOBHm_Chr2g0159511 RchiOBHm_Chr5g0028301 RchiOBHm_Chr5g0028351 RchiOBHm_Chr5g0039631
rosa_laevigata	RLG00000033080 RLG00000033088
rosa_multiflora	Rmu_sc0001020.1_g000001 Rmu_sc0002481.1_g000040 Rmu_sc0008526.1_g000010
rosa_roxburghii	Rroxscaffold_1G00051350 Rroxscaffold_1G00051420 Rroxscaffold_1G00051430
rosa_rugosa	Rorug05G0105600
rosa_samantha	Rh1AG292900 Rh4AG059100 Rh5AG199100 Rh5AG199600 Rh5BG197700 Rh5BG198100 Rh5CG217400 Rh5CG218100 Rh5DG199400 Rh5DG200000 Rh7DG370100
rosa_wichuraiana	Rw4G016870 Rw5G018160 Rw5G018190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1516
Acc36I	ACCTGC	1 cut(s)	1946
AccB7I	CCANNNNNTGG	1 cut(s)	91
AccBSI	CCGCTC	1 cut(s)	136
AccI	GTMKAC	4 cut(s)	422, 786, 1510, 1609
AciI	CCGC	5 cut(s)	136, 154, 415, 625, 1739
AclWI	GGATC	2 cut(s)	1054, 1271
AcoI	YGGCCR	1 cut(s)	616
AcsI	RAATTY	8 cut(s)	460, 528, 845, 1052, 1327, 1357, 1527, 1764
AcuI	CTGAAG	2 cut(s)	1190, 2172
AcvI	CACGTG	1 cut(s)	1703
AcyI	GRCGYC	1 cut(s)	1513
AdeI	CACNNNGTG	1 cut(s)	34
AfaI	GTAC	3 cut(s)	204, 329, 1522
AfiI	CCNNNNNNNGG	6 cut(s)	91, 373, 614, 1041, 1831, 1832
AflIII	ACRYGT	2 cut(s)	1191, 1702
AgeI	ACCGGT	1 cut(s)	551
AjnI	CCWGG	4 cut(s)	706, 1462, 1825, 2024
AloI	GAACNNNNNNTCC	2 cut(s)	857, 889
AluBI	AGCT	9 cut(s)	50, 473, 505, 733, 781, 1097, 1815, 2086, 2234
AluI	AGCT	9 cut(s)	50, 473, 505, 733, 781, 1097, 1815, 2086, 2234
Alw21I	GWGCWC	1 cut(s)	2101
Alw26I	GTCTC	5 cut(s)	1110, 1177, 1337, 1378, 2026
AlwI	GGATC	2 cut(s)	1054, 1271
AlwNI	CAGNNNCTG	1 cut(s)	1679
AoxI	GGCC	5 cut(s)	37, 257, 605, 616, 982
ApeKI	GCWGC	5 cut(s)	81, 1231, 1272, 1551, 2086
ApoI	RAATTY	8 cut(s)	460, 528, 845, 1052, 1327, 1357, 1527, 1764
AseI	ATTAAT	1 cut(s)	1722
AsiGI	ACCGGT	1 cut(s)	551
Asp700I	GAANNNNTTC	1 cut(s)	1147
AspA2I	CCTAGG	1 cut(s)	1391
AspS9I	GGNCC	3 cut(s)	37, 982, 1453
AsuC2I	CCSGG	1 cut(s)	1604
AsuHPI	GGTGA	8 cut(s)	440, 598, 846, 1074, 1175, 1451, 1852, 2146
AsuNHI	GCTAGC	1 cut(s)	1093
AvaII	GGWCC	1 cut(s)	1453
AvrII	CCTAGG	1 cut(s)	1391
AxyI	CCTNAGG	1 cut(s)	1169
BanII	GRGCYC	2 cut(s)	1416, 1691
BauI	CACGAG	1 cut(s)	681
BbrPI	CACGTG	1 cut(s)	1703
BbsI	GAAGAC	3 cut(s)	809, 1263, 2160
Bbv12I	GWGCWC	1 cut(s)	2101
BbvI	GCAGC	5 cut(s)	68, 1218, 1284, 1563, 2073
BccI	CCATC	5 cut(s)	311, 710, 714, 1169, 1464
BceAI	ACGGC	2 cut(s)	603, 2203
BcgI	CGANNNNNNTGC	2 cut(s)	1580, 1614
BciT130I	CCWGG	4 cut(s)	708, 1464, 1827, 2026
BcnI	CCSGG	1 cut(s)	1604
BcoDI	GTCTC	5 cut(s)	1110, 1177, 1337, 1378, 2026
BfaI	CTAG	5 cut(s)	1094, 1392, 1494, 1914, 2235
BfuAI	ACCTGC	1 cut(s)	1946
BglI	GCCNNNNNGGC	2 cut(s)	901, 990
BisI	GCNGC	5 cut(s)	82, 1232, 1273, 1552, 2087
BlnI	CCTAGG	1 cut(s)	1391
BlsI	GCNGC	5 cut(s)	83, 1233, 1274, 1553, 2088
Bme1390I	CCNGG	5 cut(s)	708, 1464, 1604, 1827, 2026
Bme18I	GGWCC	1 cut(s)	1453
BmgT120I	GGNCC	3 cut(s)	37, 982, 1453
BmiI	GGNNCC	4 cut(s)	894, 1454, 1539, 1960
BmrFI	CCNGG	5 cut(s)	708, 1464, 1604, 1827, 2026
BmrI	ACTGGG	1 cut(s)	1685
BmsI	GCATC	3 cut(s)	913, 938, 1243
BmtI	GCTAGC	1 cut(s)	1097
BmuI	ACTGGG	1 cut(s)	1685
BpiI	GAAGAC	3 cut(s)	809, 1263, 2160
BplI	GAGNNNNNCTC	4 cut(s)	282, 314, 1799, 1831
BpmI	CTGGAG	4 cut(s)	467, 1266, 1824, 2008
Bpu10I	CCTNAGC	2 cut(s)	1816, 2214
BpuEI	CTTGAG	1 cut(s)	2192
BpuMI	CCSGG	1 cut(s)	1604
BsaAI	YACGTR	3 cut(s)	1613, 1703, 1904
BsaBI	GATNNNNATC	1 cut(s)	1581
BsaHI	GRCGYC	1 cut(s)	1513
BsaWI	WCCGGW	2 cut(s)	551, 856
Bsc4I	CCNNNNNNNGG	6 cut(s)	91, 373, 614, 1041, 1831, 1832
Bse118I	RCCGGY	1 cut(s)	551
Bse1I	ACTGG	6 cut(s)	418, 430, 1338, 1447, 1691, 2015
Bse21I	CCTNAGG	1 cut(s)	1169
Bse3DI	GCAATG	2 cut(s)	789, 1734
Bse8I	GATNNNNATC	1 cut(s)	1581
BseBI	CCWGG	4 cut(s)	708, 1464, 1827, 2026
BseGI	GGATG	7 cut(s)	725, 889, 1180, 1579, 1582, 2038, 2188
BseJI	GATNNNNATC	1 cut(s)	1581
BseLI	CCNNNNNNNGG	6 cut(s)	91, 373, 614, 1041, 1831, 1832
BseMI	GCAATG	2 cut(s)	789, 1734
BseMII	CTCAG	6 cut(s)	1371, 1583, 1830, 2096, 2115, 2205
BseNI	ACTGG	6 cut(s)	418, 430, 1338, 1447, 1691, 2015
BseRI	GAGGAG	2 cut(s)	287, 1977
BseXI	GCAGC	5 cut(s)	68, 1218, 1284, 1563, 2073
BseYI	CCCAGC	1 cut(s)	517
BshFI	GGCC	5 cut(s)	39, 259, 607, 618, 984
BshTI	ACCGGT	1 cut(s)	551
BsiHKAI	GWGCWC	1 cut(s)	2101
BsiSI	CCGG	4 cut(s)	552, 857, 1603, 2180
BslFI	GGGAC	2 cut(s)	689, 2042
BslI	CCNNNNNNNGG	6 cut(s)	91, 373, 614, 1041, 1831, 1832
BsmAI	GTCTC	5 cut(s)	1110, 1177, 1337, 1378, 2026
BsmFI	GGGAC	2 cut(s)	689, 2042
BsmI	GAATGC	1 cut(s)	388
BsnI	GGCC	5 cut(s)	39, 259, 607, 618, 984
Bsp1286I	GDGCHC	3 cut(s)	1416, 1691, 2101
Bsp143I	GATC	3 cut(s)	1059, 1276, 1880
Bsp19I	CCATGG	1 cut(s)	335
BspACI	CCGC	5 cut(s)	136, 154, 415, 625, 1739
BspANI	GGCC	5 cut(s)	39, 259, 607, 618, 984
BspCNI	CTCAG	6 cut(s)	1372, 1582, 1829, 2095, 2116, 2206
BspHI	TCATGA	3 cut(s)	130, 576, 1108
BspLI	GGNNCC	4 cut(s)	894, 1454, 1539, 1960
BspMI	ACCTGC	1 cut(s)	1946
BspOI	GCTAGC	1 cut(s)	1097
BspPI	GGATC	2 cut(s)	1054, 1271
BsrBI	CCGCTC	1 cut(s)	136
BsrDI	GCAATG	2 cut(s)	789, 1734
BsrFI	RCCGGY	1 cut(s)	551
BsrI	ACTGG	6 cut(s)	418, 430, 1338, 1447, 1691, 2015
BssAI	RCCGGY	1 cut(s)	551
BssMI	GATC	3 cut(s)	1059, 1276, 1880
BssNI	GRCGYC	1 cut(s)	1513
BssSI	CACGAG	1 cut(s)	681
BssT1I	CCWWGG	5 cut(s)	311, 335, 613, 1138, 1391
Bst2BI	CACGAG	1 cut(s)	681
Bst2UI	CCWGG	4 cut(s)	708, 1464, 1827, 2026
Bst4CI	ACNGT	5 cut(s)	223, 343, 664, 1148, 1249
Bst6I	CTCTTC	2 cut(s)	1209, 1972
BstACI	GRCGYC	1 cut(s)	1513
BstBAI	YACGTR	3 cut(s)	1613, 1703, 1904
BstC8I	GCNNGC	3 cut(s)	1095, 1893, 2091
BstDSI	CCRYGG	1 cut(s)	335
BstEII	GGTNACC	1 cut(s)	1163
BstF5I	GGATG	7 cut(s)	725, 889, 1180, 1579, 1582, 2038, 2188
BstKTI	GATC	3 cut(s)	1062, 1279, 1883
BstMAI	GTCTC	5 cut(s)	1110, 1177, 1337, 1378, 2026
BstMBI	GATC	3 cut(s)	1059, 1276, 1880
BstMWI	GCNNNNNNNGC	7 cut(s)	61, 730, 823, 901, 990, 1821, 2176
BstNI	CCWGG	4 cut(s)	708, 1464, 1827, 2026
BstNSI	RCATGY	5 cut(s)	563, 1195, 1874, 1895, 2093
BstPI	GGTNACC	1 cut(s)	1163
BstSCI	CCNGG	5 cut(s)	706, 1462, 1602, 1825, 2024
BstSNI	TACGTA	1 cut(s)	1613
BstV1I	GCAGC	5 cut(s)	68, 1218, 1284, 1563, 2073
BstV2I	GAAGAC	3 cut(s)	809, 1263, 2160
BstX2I	RGATCY	1 cut(s)	1059
BstXI	CCANNNNNNTGG	1 cut(s)	425
BstYI	RGATCY	1 cut(s)	1059
Bsu36I	CCTNAGG	1 cut(s)	1169
BsuRI	GGCC	5 cut(s)	39, 259, 607, 618, 984
BtgI	CCRYGG	1 cut(s)	335
BtsCI	GGATG	7 cut(s)	725, 889, 1180, 1579, 1582, 2038, 2188
BtsIMutI	CAGTG	5 cut(s)	20, 228, 1345, 1557, 2121
BveI	ACCTGC	1 cut(s)	1946
Cac8I	GCNNGC	3 cut(s)	1095, 1893, 2091
CaiI	CAGNNNCTG	1 cut(s)	1679
CciI	TCATGA	3 cut(s)	130, 576, 1108
Cfr10I	RCCGGY	1 cut(s)	551
Cfr13I	GGNCC	3 cut(s)	37, 982, 1453
CseI	GACGC	2 cut(s)	1543, 2176
Csp6I	GTAC	3 cut(s)	203, 328, 1521
CspAI	ACCGGT	1 cut(s)	551
CviQI	GTAC	3 cut(s)	203, 328, 1521
DpnI	GATC	3 cut(s)	1061, 1278, 1882
DpnII	GATC	3 cut(s)	1059, 1276, 1880
DraI	TTTAAA	1 cut(s)	1867
DraIII	CACNNNGTG	1 cut(s)	34
EaeI	YGGCCR	1 cut(s)	616
Eam1104I	CTCTTC	2 cut(s)	1209, 1972
EarI	CTCTTC	2 cut(s)	1209, 1972
EciI	GGCGGA	1 cut(s)	404
Eco105I	TACGTA	1 cut(s)	1613
Eco130I	CCWWGG	5 cut(s)	311, 335, 613, 1138, 1391
Eco24I	GRGCYC	2 cut(s)	1416, 1691
Eco47I	GGWCC	1 cut(s)	1453
Eco57I	CTGAAG	2 cut(s)	1190, 2172
Eco72I	CACGTG	1 cut(s)	1703
Eco81I	CCTNAGG	1 cut(s)	1169
Eco91I	GGTNACC	1 cut(s)	1163
EcoO65I	GGTNACC	1 cut(s)	1163
EcoRII	CCWGG	4 cut(s)	706, 1462, 1825, 2024
EcoT14I	CCWWGG	5 cut(s)	311, 335, 613, 1138, 1391
EcoT22I	ATGCAT	1 cut(s)	561
EcoT38I	GRGCYC	2 cut(s)	1416, 1691
ErhI	CCWWGG	5 cut(s)	311, 335, 613, 1138, 1391
FalI	AAGNNNNNCTT	2 cut(s)	1847, 1879
FaqI	GGGAC	2 cut(s)	689, 2042
FblI	GTMKAC	4 cut(s)	422, 786, 1510, 1609
Fnu4HI	GCNGC	5 cut(s)	82, 1232, 1273, 1552, 2087
FokI	GGATG	7 cut(s)	732, 896, 1187, 1569, 1586, 2025, 2195
FriOI	GRGCYC	2 cut(s)	1416, 1691
Fsp4HI	GCNGC	5 cut(s)	82, 1232, 1273, 1552, 2087
FspBI	CTAG	5 cut(s)	1094, 1392, 1494, 1914, 2235
GluI	GCNGC	5 cut(s)	82, 1232, 1273, 1552, 2087
GsaI	CCCAGC	1 cut(s)	521
GsuI	CTGGAG	4 cut(s)	467, 1266, 1824, 2008
HaeIII	GGCC	5 cut(s)	39, 259, 607, 618, 984
HapII	CCGG	4 cut(s)	552, 857, 1603, 2180
HgaI	GACGC	2 cut(s)	1543, 2176
Hin1I	GRCGYC	1 cut(s)	1513
HincII	GTYRAC	2 cut(s)	835, 1511
HindII	GTYRAC	2 cut(s)	835, 1511
HindIII	AAGCTT	2 cut(s)	731, 779
HpaII	CCGG	4 cut(s)	552, 857, 1603, 2180
HphI	GGTGA	8 cut(s)	440, 598, 846, 1074, 1175, 1451, 1852, 2146
Hpy166II	GTNNAC	8 cut(s)	396, 423, 787, 835, 997, 1511, 1610, 1616
Hpy8I	GTNNAC	8 cut(s)	396, 423, 787, 835, 997, 1511, 1610, 1616
Hpy99I	CGWCG	1 cut(s)	1515
HpyCH4III	ACNGT	5 cut(s)	223, 343, 664, 1148, 1249
HpyCH4IV	ACGT	4 cut(s)	1513, 1612, 1702, 1903
HpyF10VI	GCNNNNNNNGC	7 cut(s)	61, 730, 823, 901, 990, 1821, 2176
HpySE526I	ACGT	4 cut(s)	1513, 1612, 1702, 1903
Hsp92I	GRCGYC	1 cut(s)	1513
Kzo9I	GATC	3 cut(s)	1059, 1276, 1880
LmnI	GCTCC	3 cut(s)	892, 1537, 1548
Lsp1109I	GCAGC	5 cut(s)	68, 1218, 1284, 1563, 2073
LweI	GCATC	3 cut(s)	913, 938, 1243
MaeI	CTAG	5 cut(s)	1094, 1392, 1494, 1914, 2235
MaeII	ACGT	4 cut(s)	1513, 1612, 1702, 1903
MaeIII	GTNAC	7 cut(s)	16, 694, 1163, 1555, 1693, 1920, 2105
MalI	GATC	3 cut(s)	1061, 1278, 1882
MbiI	CCGCTC	1 cut(s)	136
MboI	GATC	3 cut(s)	1059, 1276, 1880
MfeI	CAATTG	2 cut(s)	76, 741
MflI	RGATCY	1 cut(s)	1059
MhlI	GDGCHC	3 cut(s)	1416, 1691, 2101
MlyI	GAGTC	3 cut(s)	1685, 1958, 2074
MmeI	TCCRAC	2 cut(s)	972, 1986
Mph1103I	ATGCAT	1 cut(s)	561
MroXI	GAANNNNTTC	1 cut(s)	1147
MseI	TTAA	8 cut(s)	666, 953, 1056, 1155, 1722, 1866, 2049, 2222
MslI	CAYNNNNRTG	2 cut(s)	401, 2094
MspA1I	CMGCKG	2 cut(s)	473, 2086
MspI	CCGG	4 cut(s)	552, 857, 1603, 2180
MspR9I	CCNGG	5 cut(s)	708, 1464, 1604, 1827, 2026
MunI	CAATTG	2 cut(s)	76, 741
Mva1269I	GAATGC	1 cut(s)	388
MvaI	CCWGG	4 cut(s)	708, 1464, 1827, 2026
MwoI	GCNNNNNNNGC	7 cut(s)	61, 730, 823, 901, 990, 1821, 2176
NciI	CCSGG	1 cut(s)	1604
NcoI	CCATGG	1 cut(s)	335
NdeII	GATC	3 cut(s)	1059, 1276, 1880
NheI	GCTAGC	1 cut(s)	1093
NlaIV	GGNNCC	4 cut(s)	894, 1454, 1539, 1960
NmuCI	GTSAC	4 cut(s)	16, 1163, 1555, 1920
NsiI	ATGCAT	1 cut(s)	561
NspI	RCATGY	5 cut(s)	563, 1195, 1874, 1895, 2093
PaeI	GCATGC	2 cut(s)	1895, 2093
PagI	TCATGA	3 cut(s)	130, 576, 1108
PasI	CCCWGGG	1 cut(s)	707
PciI	ACATGT	1 cut(s)	1191
PctI	GAATGC	1 cut(s)	388
PdmI	GAANNNNTTC	1 cut(s)	1147
PfeI	GAWTC	8 cut(s)	190, 212, 1079, 1295, 1639, 1931, 2054, 2129
PflMI	CCANNNNNTGG	1 cut(s)	91
PinAI	ACCGGT	1 cut(s)	551
PkrI	GCNGC	5 cut(s)	83, 1233, 1274, 1553, 2088
PleI	GAGTC	3 cut(s)	1684, 1958, 2074
PmaCI	CACGTG	1 cut(s)	1703
PmlI	CACGTG	1 cut(s)	1703
PpsI	GAGTC	3 cut(s)	1684, 1958, 2074
Ppu21I	YACGTR	3 cut(s)	1613, 1703, 1904
PscI	ACATGT	1 cut(s)	1191
PshBI	ATTAAT	1 cut(s)	1722
Psp6I	CCWGG	4 cut(s)	706, 1462, 1825, 2024
PspCI	CACGTG	1 cut(s)	1703
PspEI	GGTNACC	1 cut(s)	1163
PspFI	CCCAGC	1 cut(s)	517
PspGI	CCWGG	4 cut(s)	706, 1462, 1825, 2024
PspN4I	GGNNCC	4 cut(s)	894, 1454, 1539, 1960
PspPI	GGNCC	3 cut(s)	37, 982, 1453
PsrI	GAACNNNNNNTAC	2 cut(s)	1606, 1638
PstNI	CAGNNNCTG	1 cut(s)	1679
PsuI	RGATCY	1 cut(s)	1059
PvuII	CAGCTG	2 cut(s)	473, 2086
RsaI	GTAC	3 cut(s)	204, 329, 1522
RsaNI	GTAC	3 cut(s)	203, 328, 1521
RseI	CAYNNNNRTG	2 cut(s)	401, 2094
SalI	GTCGAC	1 cut(s)	1509
SaqAI	TTAA	8 cut(s)	666, 953, 1056, 1155, 1722, 1866, 2049, 2222
SatI	GCNGC	5 cut(s)	82, 1232, 1273, 1552, 2087
Sau3AI	GATC	3 cut(s)	1059, 1276, 1880
Sau96I	GGNCC	3 cut(s)	37, 982, 1453
SchI	GAGTC	3 cut(s)	1685, 1958, 2074
ScrFI	CCNGG	5 cut(s)	708, 1464, 1604, 1827, 2026
SduI	GDGCHC	3 cut(s)	1416, 1691, 2101
SfaNI	GCATC	3 cut(s)	913, 938, 1243
SinI	GGWCC	1 cut(s)	1453
SmiMI	CAYNNNNRTG	2 cut(s)	401, 2094
SmlI	CTYRAG	1 cut(s)	2171
SmoI	CTYRAG	1 cut(s)	2171
SnaBI	TACGTA	1 cut(s)	1613
SphI	GCATGC	2 cut(s)	1895, 2093
SsiI	CCGC	5 cut(s)	136, 154, 415, 625, 1739
SspMI	CTAG	5 cut(s)	1094, 1392, 1494, 1914, 2235
StyD4I	CCNGG	5 cut(s)	706, 1462, 1602, 1825, 2024
StyI	CCWWGG	5 cut(s)	311, 335, 613, 1138, 1391
TaaI	ACNGT	5 cut(s)	223, 343, 664, 1148, 1249
TaiI	ACGT	4 cut(s)	1516, 1615, 1705, 1906
TaqI	TCGA	4 cut(s)	171, 639, 1298, 1510
TatI	WGTACW	1 cut(s)	327
TfiI	GAWTC	8 cut(s)	190, 212, 1079, 1295, 1639, 1931, 2054, 2129
Tru1I	TTAA	8 cut(s)	666, 953, 1056, 1155, 1722, 1866, 2049, 2222
Tru9I	TTAA	8 cut(s)	666, 953, 1056, 1155, 1722, 1866, 2049, 2222
TscAI	CASTG	5 cut(s)	27, 228, 1345, 1564, 2128
TseFI	GTSAC	4 cut(s)	16, 1163, 1555, 1920
TseI	GCWGC	5 cut(s)	81, 1231, 1272, 1551, 2086
Tsp45I	GTSAC	4 cut(s)	16, 1163, 1555, 1920
TspDTI	ATGAA	8 cut(s)	119, 473, 953, 1097, 1578, 1650, 1740, 1776
TspRI	CASTG	5 cut(s)	27, 228, 1345, 1564, 2128
Van91I	CCANNNNNTGG	1 cut(s)	91
VpaK11BI	GGWCC	1 cut(s)	1453
VspI	ATTAAT	1 cut(s)	1722
XapI	RAATTY	8 cut(s)	460, 528, 845, 1052, 1327, 1357, 1527, 1764
XbaI	TCTAGA	1 cut(s)	1913
XceI	RCATGY	5 cut(s)	563, 1195, 1874, 1895, 2093
XmaJI	CCTAGG	1 cut(s)	1391
XmiI	GTMKAC	4 cut(s)	422, 786, 1510, 1609
XmnI	GAANNNNTTC	1 cut(s)	1147
XspI	CTAG	5 cut(s)	1094, 1392, 1494, 1914, 2235
ZraI	GACGTC	1 cut(s)	1514
Zsp2I	ATGCAT	1 cut(s)	561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.