Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002481.1

Orthogroup ID

OG0000936

Physical Location & Seq

Genomic Coordinates Reverse (-)

147473 .. 150407

Gene Structure 2935 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002481.1_g000040.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

atgtctaaagctcgcgtcgccgtcgacatcaacgtcctcctccgcaaggattttcgggactacgagtccttcatcgtccaatgggtgggattagacgagaaaggaaaaaagaacaagaagaaggaacaaggacaacgaacagaggaggagaaagggagagaagaaaagaaaagaaaagaagaagatgggaagggagaaagagatagagattttgggctcgatgatgacttggttttggagttgggactgaattttctgacagctgatgatatgattgcaatactcgctgtgaagttgaggaaaagactgggtttcaggatgtgggcaaagttgcatattacaggcatgcatgttgaagggaagctgttgattggggttaagtttcttcgtaggtggcctttccttggccgtctgcggatatgcttcattgagcctccatattttcagatgaccgtcaagcctatttttacacatggccttgatgttacagttcttccaggaattgctgggtggctcttaatattttatcatccaaatatgctggttgttgacatggagaaattcgcctcaccgcagcaagagagttggttctctgtgaatgaaaaggaatctcttggacatgtcagagtagaagttattgaagcatctgacatcaaagctgcagatctaaatggattatctgacccttatgttaagggtcaattgggcctttactggttcaggacgaagacacaaaagaaaacactggctccaaaatggcatgaagaattcaagatgcccattattacatgggattcatctactgtgctatctatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005886 GO:0012505 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00290 ko00650 ko00660 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00290 map00650 map00660 map00770 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

C2 SMP_LBD

Protein Analysis

272

Amino Acids

31.6

Weight (kDa)

9.07

Isoelectric Point (pI)

41.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000936)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53590 AT3G14590 AT3G14590 AT3G14590 AT3G14590 AT3G14590
fragaria_vesca	FvH4_3g16980 FvH4_3g16980 FvH4_3g16980 FvH4_3g16980 FvH4_3g16980 FvH4_3g17020 FvH4_3g17020 FvH4_3g17020 FvH4_3g17020 FvH4_3g17020 FvH4_3g17020
malus_domestica	MD00G1185500.v1.1 MD00G1185600.v1.1 MD03G1254200.v1.1 MD03G1254900.v1.1 MD11G1275800.v1.1 MD11G1276000.v1.1
prunus_persica	Prupe.4G152200_v2.0.a1 Prupe.4G152200_v2.0.a1 Prupe.4G152300_v2.0.a1 Prupe.4G152300_v2.0.a1 Prupe.4G152300_v2.0.a1 Prupe.4G152300_v2.0.a1 Prupe.4G152300_v2.0.a1 Prupe.4G152300_v2.0.a1 Prupe.4G152300_v2.0.a1
pyrus_communis	pycom03g20170 pycom03g20190 pycom11g24400
rosa_chinensis	RchiOBHm_Chr2g0135571 RchiOBHm_Chr2g0159501 RchiOBHm_Chr2g0159511 RchiOBHm_Chr5g0028301 RchiOBHm_Chr5g0028351 RchiOBHm_Chr5g0039631
rosa_laevigata	RLG00000033080 RLG00000033088
rosa_multiflora	Rmu_sc0001020.1_g000001 Rmu_sc0002481.1_g000040 Rmu_sc0008526.1_g000010
rosa_roxburghii	Rroxscaffold_1G00051350 Rroxscaffold_1G00051420 Rroxscaffold_1G00051430
rosa_rugosa	Rorug05G0105600
rosa_samantha	Rh1AG292900 Rh4AG059100 Rh5AG199100 Rh5AG199600 Rh5BG197700 Rh5BG198100 Rh5CG217400 Rh5CG218100 Rh5DG199400 Rh5DG200000 Rh7DG370100
rosa_wichuraiana	Rw4G016870 Rw5G018160 Rw5G018190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	32
AccB7I	CCANNNNNTGG	1 cut(s)	85
AccI	GTMKAC	1 cut(s)	24
AccII	CGCG	1 cut(s)	15
AciI	CCGC	3 cut(s)	43, 415, 572
AcoI	YGGCCR	1 cut(s)	406
AcsI	RAATTY	3 cut(s)	250, 560, 767
AfiI	CCNNNNNNNGG	3 cut(s)	46, 85, 404
AflIII	ACRYGT	1 cut(s)	619
AgsI	TTSAA	3 cut(s)	356, 641, 772
AhdI	GACNNNNNGTC	1 cut(s)	64
AjnI	CCWGG	1 cut(s)	496
AluBI	AGCT	4 cut(s)	11, 263, 364, 659
AluI	AGCT	4 cut(s)	11, 263, 364, 659
AoxI	GGCC	4 cut(s)	395, 406, 475, 706
ApeKI	GCWGC	2 cut(s)	574, 659
ApoI	RAATTY	3 cut(s)	250, 560, 767
AspS9I	GGNCC	1 cut(s)	706
AsuHPI	GGTGA	1 cut(s)	561
BanII	GRGCYC	1 cut(s)	219
BbsI	GAAGAC	1 cut(s)	734
BbvI	GCAGC	2 cut(s)	586, 646
BccI	CCATC	1 cut(s)	179
BceAI	ACGGC	2 cut(s)	5, 393
BciT130I	CCWGG	1 cut(s)	498
BfmI	CTRYAG	1 cut(s)	660
BglII	AGATCT	1 cut(s)	664
BisI	GCNGC	2 cut(s)	575, 660
BlsI	GCNGC	2 cut(s)	576, 661
Bme1390I	CCNGG	1 cut(s)	498
BmeRI	GACNNNNNGTC	1 cut(s)	64
BmgT120I	GGNCC	1 cut(s)	706
BmiI	GGNNCC	1 cut(s)	750
BmrFI	CCNGG	1 cut(s)	498
BmrI	ACTGGG	1 cut(s)	317
BmsI	GCATC	2 cut(s)	653, 765
BmuI	ACTGGG	1 cut(s)	317
BpiI	GAAGAC	1 cut(s)	734
BsaJI	CCNNGG	1 cut(s)	403
BsaXI	ACNNNNNCTCC	2 cut(s)	733, 763
Bsc4I	CCNNNNNNNGG	3 cut(s)	46, 85, 404
Bse1I	ACTGG	3 cut(s)	312, 719, 750
BseBI	CCWGG	1 cut(s)	498
BseDI	CCNNGG	1 cut(s)	403
BseGI	GGATG	2 cut(s)	324, 529
BseLI	CCNNNNNNNGG	3 cut(s)	46, 85, 404
BseNI	ACTGG	3 cut(s)	312, 719, 750
BseRI	GAGGAG	3 cut(s)	29, 158, 161
BseXI	GCAGC	2 cut(s)	586, 646
BseYI	CCCAGC	1 cut(s)	506
Bsh1236I	CGCG	1 cut(s)	15
BshFI	GGCC	4 cut(s)	397, 408, 477, 708
BslFI	GGGAC	2 cut(s)	71, 258
BslI	CCNNNNNNNGG	3 cut(s)	46, 85, 404
BsmFI	GGGAC	2 cut(s)	71, 258
BsnI	GGCC	4 cut(s)	397, 408, 477, 708
Bsp1286I	GDGCHC	1 cut(s)	219
Bsp143I	GATC	1 cut(s)	664
BspACI	CCGC	3 cut(s)	43, 415, 572
BspANI	GGCC	4 cut(s)	397, 408, 477, 708
BspFNI	CGCG	1 cut(s)	15
BspLI	GGNNCC	1 cut(s)	750
BspMAI	CTGCAG	1 cut(s)	664
BsrI	ACTGG	3 cut(s)	312, 719, 750
BssECI	CCNNGG	1 cut(s)	403
BssMI	GATC	1 cut(s)	664
BssT1I	CCWWGG	1 cut(s)	403
Bst2UI	CCWGG	1 cut(s)	498
Bst4CI	ACNGT	3 cut(s)	454, 490, 805
BstC8I	GCNNGC	2 cut(s)	13, 347
BstENI	CCTNNNNNAGG	1 cut(s)	44
BstF5I	GGATG	2 cut(s)	324, 529
BstFNI	CGCG	1 cut(s)	15
BstKTI	GATC	1 cut(s)	667
BstMBI	GATC	1 cut(s)	664
BstMWI	GCNNNNNNNGC	2 cut(s)	17, 284
BstNI	CCWGG	1 cut(s)	498
BstNSI	RCATGY	3 cut(s)	349, 353, 623
BstSCI	CCNGG	1 cut(s)	496
BstSFI	CTRYAG	1 cut(s)	660
BstUI	CGCG	1 cut(s)	15
BstV1I	GCAGC	2 cut(s)	586, 646
BstV2I	GAAGAC	1 cut(s)	734
BstX2I	RGATCY	1 cut(s)	664
BstYI	RGATCY	1 cut(s)	664
BsuRI	GGCC	4 cut(s)	397, 408, 477, 708
BtsCI	GGATG	2 cut(s)	324, 529
BtsIMutI	CAGTG	1 cut(s)	743
Cac8I	GCNNGC	2 cut(s)	13, 347
Cfr13I	GGNCC	1 cut(s)	706
CseI	GACGC	1 cut(s)	4
CviAII	CATG	7 cut(s)	346, 350, 473, 553, 620, 761, 789
DpnI	GATC	1 cut(s)	666
DpnII	GATC	1 cut(s)	664
DrdI	GACNNNNNNGTC	1 cut(s)	32
DriI	GACNNNNNGTC	1 cut(s)	64
DseDI	GACNNNNNNGTC	1 cut(s)	32
EaeI	YGGCCR	1 cut(s)	406
Eam1105I	GACNNNNNGTC	1 cut(s)	64
Eco130I	CCWWGG	1 cut(s)	403
Eco24I	GRGCYC	1 cut(s)	219
EcoNI	CCTNNNNNAGG	1 cut(s)	44
EcoRI	GAATTC	1 cut(s)	767
EcoRII	CCWGG	1 cut(s)	496
EcoT14I	CCWWGG	1 cut(s)	403
EcoT22I	ATGCAT	1 cut(s)	351
EcoT38I	GRGCYC	1 cut(s)	219
ErhI	CCWWGG	1 cut(s)	403
FaeI	CATG	7 cut(s)	349, 353, 476, 556, 623, 764, 792
FaqI	GGGAC	2 cut(s)	71, 258
FatI	CATG	7 cut(s)	345, 349, 472, 552, 619, 760, 788
FblI	GTMKAC	1 cut(s)	24
Fnu4HI	GCNGC	2 cut(s)	575, 660
FokI	GGATG	2 cut(s)	331, 516
FriOI	GRGCYC	1 cut(s)	219
Fsp4HI	GCNGC	2 cut(s)	575, 660
GluI	GCNGC	2 cut(s)	575, 660
GsaI	CCCAGC	1 cut(s)	510
HaeIII	GGCC	4 cut(s)	397, 408, 477, 708
HgaI	GACGC	1 cut(s)	4
Hin1II	CATG	7 cut(s)	349, 353, 476, 556, 623, 764, 792
HincII	GTYRAC	2 cut(s)	25, 550
HindII	GTYRAC	2 cut(s)	25, 550
HinfI	GANTC	3 cut(s)	65, 608, 794
HphI	GGTGA	1 cut(s)	561
Hpy166II	GTNNAC	2 cut(s)	25, 550
Hpy188I	TCNGA	5 cut(s)	258, 447, 626, 649, 682
Hpy188III	TCNNGA	4 cut(s)	56, 316, 721, 772
Hpy8I	GTNNAC	2 cut(s)	25, 550
Hpy99I	CGWCG	2 cut(s)	20, 26
HpyAV	CCTTC	4 cut(s)	79, 115, 184, 350
HpyCH4III	ACNGT	3 cut(s)	454, 490, 805
HpyCH4IV	ACGT	1 cut(s)	33
HpyCH4V	TGCA	4 cut(s)	278, 334, 349, 662
HpyF10VI	GCNNNNNNNGC	2 cut(s)	17, 284
HpySE526I	ACGT	1 cut(s)	33
Hsp92II	CATG	7 cut(s)	349, 353, 476, 556, 623, 764, 792
Kzo9I	GATC	1 cut(s)	664
LmnI	GCTCC	1 cut(s)	754
Lsp1109I	GCAGC	2 cut(s)	586, 646
LweI	GCATC	2 cut(s)	653, 765
MaeII	ACGT	1 cut(s)	33
MaeIII	GTNAC	1 cut(s)	484
MalI	GATC	1 cut(s)	666
MboI	GATC	1 cut(s)	664
MboII	GAAGA	8 cut(s)	130, 173, 191, 194, 377, 485, 739, 776
MfeI	CAATTG	1 cut(s)	701
MflI	RGATCY	1 cut(s)	664
MhlI	GDGCHC	1 cut(s)	219
MluCI	AATT	5 cut(s)	250, 501, 560, 701, 767
MlyI	GAGTC	1 cut(s)	74
MnlI	CCTC	7 cut(s)	47, 50, 136, 139, 291, 444, 577
Mph1103I	ATGCAT	1 cut(s)	351
MseI	TTAA	3 cut(s)	378, 518, 693
MspA1I	CMGCKG	1 cut(s)	263
MspR9I	CCNGG	1 cut(s)	498
MunI	CAATTG	1 cut(s)	701
MvaI	CCWGG	1 cut(s)	498
MvnI	CGCG	1 cut(s)	15
MwoI	GCNNNNNNNGC	2 cut(s)	17, 284
NdeII	GATC	1 cut(s)	664
NlaIII	CATG	7 cut(s)	349, 353, 476, 556, 623, 764, 792
NlaIV	GGNNCC	1 cut(s)	750
NsiI	ATGCAT	1 cut(s)	351
NspI	RCATGY	3 cut(s)	349, 353, 623
PaeI	GCATGC	1 cut(s)	349
PciI	ACATGT	1 cut(s)	619
PcsI	WCGNNNNNNNCGW	1 cut(s)	30
PfeI	GAWTC	2 cut(s)	608, 794
PflMI	CCANNNNNTGG	1 cut(s)	85
PfoI	TCCNGGA	1 cut(s)	496
PkrI	GCNGC	2 cut(s)	576, 661
PleI	GAGTC	1 cut(s)	73
PpsI	GAGTC	1 cut(s)	73
PscI	ACATGT	1 cut(s)	619
Psp6I	CCWGG	1 cut(s)	496
PspFI	CCCAGC	1 cut(s)	506
PspGI	CCWGG	1 cut(s)	496
PspN4I	GGNNCC	1 cut(s)	750
PspPI	GGNCC	1 cut(s)	706
PstI	CTGCAG	1 cut(s)	664
PsuI	RGATCY	1 cut(s)	664
PvuII	CAGCTG	1 cut(s)	263
SalI	GTCGAC	1 cut(s)	23
SaqAI	TTAA	3 cut(s)	378, 518, 693
SatI	GCNGC	2 cut(s)	575, 660
Sau3AI	GATC	1 cut(s)	664
Sau96I	GGNCC	1 cut(s)	706
SchI	GAGTC	1 cut(s)	74
ScrFI	CCNGG	1 cut(s)	498
SduI	GDGCHC	1 cut(s)	219
SetI	ASST	6 cut(s)	13, 36, 265, 366, 395, 661
SfaNI	GCATC	2 cut(s)	653, 765
SfcI	CTRYAG	1 cut(s)	660
SphI	GCATGC	1 cut(s)	349
Sse9I	AATT	5 cut(s)	250, 501, 560, 701, 767
SsiI	CCGC	3 cut(s)	43, 415, 572
SspI	AATATT	1 cut(s)	522
StyD4I	CCNGG	1 cut(s)	496
StyI	CCWWGG	1 cut(s)	403
TaaI	ACNGT	3 cut(s)	454, 490, 805
TaiI	ACGT	1 cut(s)	36
TaqI	TCGA	2 cut(s)	24, 219
TasI	AATT	5 cut(s)	250, 501, 560, 701, 767
TfiI	GAWTC	2 cut(s)	608, 794
Tru1I	TTAA	3 cut(s)	378, 518, 693
Tru9I	TTAA	3 cut(s)	378, 518, 693
TscAI	CASTG	1 cut(s)	750
TseI	GCWGC	2 cut(s)	574, 659
TspDTI	ATGAA	5 cut(s)	61, 415, 615, 777, 786
TspRI	CASTG	1 cut(s)	750
Van91I	CCANNNNNTGG	1 cut(s)	85
XagI	CCTNNNNNAGG	1 cut(s)	44
XapI	RAATTY	3 cut(s)	250, 560, 767
XceI	RCATGY	3 cut(s)	349, 353, 623
XmiI	GTMKAC	1 cut(s)	24
Zsp2I	ATGCAT	1 cut(s)	351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.