Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000936

Physical Location & Seq

Genomic Coordinates Forward (+)

72055274 .. 72057909

Gene Structure 2636 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00051420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGACATTACAGAGGTTTCAATCGTACACCATGTGGGATTTGTGTTATTTGTGCTTTGGTTGCTTGCTCAGCACAATTGCTGCTACCCAGTTGCCTACTTTGTCTCTCTGATTTATCTCTACCTGGTACTTTCTGATTCTGAAACAGTGCGATGGTTGAACCATGCACTTGAAAAGATATGGCCTATATGTATAGAACAGATTGCTTCACAGAAGATTCTCCTCCCTATTATACCTTGGTTTTTGGAGAAGTACAAACCATGGACTGCCAAGGAAGCAGTGGTTCAGCACCTTTACTTAGGAAGAAATGCACCTATGCTCACAGATATTAGAGTTGTTCGCGAGTCTAATGATGATGACCACTTGGTTTTGGAGTTGGGACTGAATTTTCTGACAGCTGATGATATGATTGCAATACTTGCTGTGAAGTTGAGGAAAAGACTGGGCTTCGGGATGTGGGCAAAGTTGCATATTACAGGCATGCATGTTGAAGGGAAGCTGTTGATTGGGGTTAAGTTTCTTCGTAGGTGGCCTTTCCTTGGCCGTCTGCGGTTATGCTTCATTGAACCTCCATATTTTCAGATGACCGTCAAGCCTATTTTTACACATGGCCTTGATGTTACAGTTCTTCCAGGAATTGCTGGGTGGCTGGAAAAGCTTCTTTCCATTGCCTTTGAGCAGACCCTTGTTGAGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005886 GO:0012505 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00290 ko00650 ko00660 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00290 map00650 map00660 map00770 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

C2 SMP_LBD

Protein Analysis

232

Amino Acids

26.79

Weight (kDa)

7.12

Isoelectric Point (pI)

38.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SMP_MUG190-like	PF25669	163 - 227	1e-05	MUG190-like SMP domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000936)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53590 AT3G14590 AT3G14590 AT3G14590 AT3G14590 AT3G14590
fragaria_vesca	FvH4_3g16980 FvH4_3g16980 FvH4_3g16980 FvH4_3g16980 FvH4_3g16980 FvH4_3g17020 FvH4_3g17020 FvH4_3g17020 FvH4_3g17020 FvH4_3g17020 FvH4_3g17020
malus_domestica	MD00G1185500.v1.1 MD00G1185600.v1.1 MD03G1254200.v1.1 MD03G1254900.v1.1 MD11G1275800.v1.1 MD11G1276000.v1.1
prunus_persica	Prupe.4G152200_v2.0.a1 Prupe.4G152200_v2.0.a1 Prupe.4G152300_v2.0.a1 Prupe.4G152300_v2.0.a1 Prupe.4G152300_v2.0.a1 Prupe.4G152300_v2.0.a1 Prupe.4G152300_v2.0.a1 Prupe.4G152300_v2.0.a1 Prupe.4G152300_v2.0.a1
pyrus_communis	pycom03g20170 pycom03g20190 pycom11g24400
rosa_chinensis	RchiOBHm_Chr2g0135571 RchiOBHm_Chr2g0159501 RchiOBHm_Chr2g0159511 RchiOBHm_Chr5g0028301 RchiOBHm_Chr5g0028351 RchiOBHm_Chr5g0039631
rosa_laevigata	RLG00000033080 RLG00000033088
rosa_multiflora	Rmu_sc0001020.1_g000001 Rmu_sc0002481.1_g000040 Rmu_sc0008526.1_g000010
rosa_roxburghii	Rroxscaffold_1G00051350 Rroxscaffold_1G00051420 Rroxscaffold_1G00051430
rosa_rugosa	Rorug05G0105600
rosa_samantha	Rh1AG292900 Rh4AG059100 Rh5AG199100 Rh5AG199600 Rh5BG197700 Rh5BG198100 Rh5CG217400 Rh5CG218100 Rh5DG199400 Rh5DG200000 Rh7DG370100
rosa_wichuraiana	Rw4G016870 Rw5G018160 Rw5G018190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	342
AciI	CCGC	1 cut(s)	550
AcoI	YGGCCR	1 cut(s)	541
AcsI	RAATTY	1 cut(s)	385
AdeI	CACNNNGTG	1 cut(s)	34
AfaI	GTAC	3 cut(s)	27, 129, 254
AfiI	CCNNNNNNNGG	2 cut(s)	539, 691
AgsI	TTSAA	5 cut(s)	21, 160, 173, 491, 566
AjnI	CCWGG	2 cut(s)	123, 631
AluBI	AGCT	3 cut(s)	398, 499, 658
AluI	AGCT	3 cut(s)	398, 499, 658
Alw26I	GTCTC	1 cut(s)	109
AoxI	GGCC	4 cut(s)	182, 530, 541, 610
ApeKI	GCWGC	1 cut(s)	81
ApoI	RAATTY	1 cut(s)	385
Asp700I	GAANNNNTTC	1 cut(s)	657
BbvI	GCAGC	1 cut(s)	68
BccI	CCATC	1 cut(s)	147
BceAI	ACGGC	1 cut(s)	528
BciT130I	CCWGG	2 cut(s)	125, 633
BcoDI	GTCTC	1 cut(s)	109
BisI	GCNGC	1 cut(s)	82
BlpI	GCTNAGC	1 cut(s)	69
BlsI	GCNGC	1 cut(s)	83
Bme1390I	CCNGG	2 cut(s)	125, 633
BmrFI	CCNGG	2 cut(s)	125, 633
BmrI	ACTGGG	2 cut(s)	83, 452
BmuI	ACTGGG	2 cut(s)	83, 452
Bpu1102I	GCTNAGC	1 cut(s)	69
BsaJI	CCNNGG	4 cut(s)	236, 260, 270, 538
Bsc4I	CCNNNNNNNGG	2 cut(s)	539, 691
Bse1I	ACTGG	2 cut(s)	89, 447
Bse3DI	GCAATG	1 cut(s)	666
BseBI	CCWGG	2 cut(s)	125, 633
BseDI	CCNNGG	4 cut(s)	236, 260, 270, 538
BseGI	GGATG	1 cut(s)	459
BseLI	CCNNNNNNNGG	2 cut(s)	539, 691
BseMI	GCAATG	1 cut(s)	666
BseMII	CTCAG	1 cut(s)	83
BseNI	ACTGG	2 cut(s)	89, 447
BseRI	GAGGAG	1 cut(s)	212
BseXI	GCAGC	1 cut(s)	68
BseYI	CCCAGC	1 cut(s)	641
Bsh1236I	CGCG	1 cut(s)	342
BshFI	GGCC	4 cut(s)	184, 532, 543, 612
BslFI	GGGAC	1 cut(s)	393
BslI	CCNNNNNNNGG	2 cut(s)	539, 691
BsmAI	GTCTC	1 cut(s)	109
BsmFI	GGGAC	1 cut(s)	393
BsnI	GGCC	4 cut(s)	184, 532, 543, 612
Bsp1720I	GCTNAGC	1 cut(s)	69
Bsp19I	CCATGG	1 cut(s)	260
Bsp68I	TCGCGA	1 cut(s)	342
BspACI	CCGC	1 cut(s)	550
BspANI	GGCC	4 cut(s)	184, 532, 543, 612
BspCNI	CTCAG	1 cut(s)	82
BspFNI	CGCG	1 cut(s)	342
BsrDI	GCAATG	1 cut(s)	666
BsrI	ACTGG	2 cut(s)	89, 447
BssECI	CCNNGG	4 cut(s)	236, 260, 270, 538
BssT1I	CCWWGG	4 cut(s)	236, 260, 270, 538
Bst2UI	CCWGG	2 cut(s)	125, 633
Bst4CI	ACNGT	3 cut(s)	148, 589, 625
BstAPI	GCANNNNNTGC	1 cut(s)	419
BstC8I	GCNNGC	2 cut(s)	66, 482
BstDEI	CTNAG	2 cut(s)	69, 298
BstDSI	CCRYGG	1 cut(s)	260
BstENI	CCTNNNNNAGG	1 cut(s)	689
BstF5I	GGATG	1 cut(s)	459
BstFNI	CGCG	1 cut(s)	342
BstMAI	GTCTC	1 cut(s)	109
BstMWI	GCNNNNNNNGC	5 cut(s)	61, 70, 275, 419, 655
BstNI	CCWGG	2 cut(s)	125, 633
BstNSI	RCATGY	2 cut(s)	484, 488
BstSCI	CCNGG	2 cut(s)	123, 631
BstUI	CGCG	1 cut(s)	342
BstV1I	GCAGC	1 cut(s)	68
BsuRI	GGCC	4 cut(s)	184, 532, 543, 612
BtgI	CCRYGG	1 cut(s)	260
BtgZI	GCGATG	1 cut(s)	166
BtsCI	GGATG	1 cut(s)	459
BtsI	GCAGTG	1 cut(s)	285
BtsIMutI	CAGTG	2 cut(s)	153, 285
BtuMI	TCGCGA	1 cut(s)	342
Cac8I	GCNNGC	2 cut(s)	66, 482
CsiI	ACCWGGT	1 cut(s)	123
Csp6I	GTAC	3 cut(s)	26, 128, 253
CviAII	CATG	7 cut(s)	32, 164, 261, 481, 485, 608, 696
CviQI	GTAC	3 cut(s)	26, 128, 253
DdeI	CTNAG	2 cut(s)	69, 298
DraIII	CACNNNGTG	1 cut(s)	34
EaeI	YGGCCR	1 cut(s)	541
Eco130I	CCWWGG	4 cut(s)	236, 260, 270, 538
EcoNI	CCTNNNNNAGG	1 cut(s)	689
EcoRII	CCWGG	2 cut(s)	123, 631
EcoT14I	CCWWGG	4 cut(s)	236, 260, 270, 538
EcoT22I	ATGCAT	1 cut(s)	486
ErhI	CCWWGG	4 cut(s)	236, 260, 270, 538
FaeI	CATG	7 cut(s)	35, 167, 264, 484, 488, 611, 699
FaqI	GGGAC	1 cut(s)	393
FatI	CATG	7 cut(s)	31, 163, 260, 480, 484, 607, 695
Fnu4HI	GCNGC	1 cut(s)	82
FokI	GGATG	1 cut(s)	466
Fsp4HI	GCNGC	1 cut(s)	82
GluI	GCNGC	1 cut(s)	82
GsaI	CCCAGC	1 cut(s)	645
HaeIII	GGCC	4 cut(s)	184, 532, 543, 612
Hin1II	CATG	7 cut(s)	35, 167, 264, 484, 488, 611, 699
HindIII	AAGCTT	1 cut(s)	656
HinfI	GANTC	3 cut(s)	137, 217, 344
Hpy166II	GTNNAC	1 cut(s)	28
Hpy188I	TCNGA	5 cut(s)	111, 136, 142, 393, 582
Hpy188III	TCNNGA	2 cut(s)	341, 451
Hpy8I	GTNNAC	1 cut(s)	28
HpyAV	CCTTC	1 cut(s)	485
HpyCH4III	ACNGT	3 cut(s)	148, 589, 625
HpyCH4V	TGCA	5 cut(s)	167, 311, 413, 469, 484
HpyF10VI	GCNNNNNNNGC	5 cut(s)	61, 70, 275, 419, 655
HpyF3I	CTNAG	2 cut(s)	69, 298
Hsp92II	CATG	7 cut(s)	35, 167, 264, 484, 488, 611, 699
LpnPI	CCDG	9 cut(s)	102, 110, 137, 428, 462, 618, 627, 635, 645
Lsp1109I	GCAGC	1 cut(s)	68
MabI	ACCWGGT	1 cut(s)	123
MaeIII	GTNAC	1 cut(s)	619
MboII	GAAGA	4 cut(s)	226, 315, 512, 620
MfeI	CAATTG	1 cut(s)	76
MluCI	AATT	3 cut(s)	76, 385, 636
MlyI	GAGTC	1 cut(s)	353
MnlI	CCTC	5 cut(s)	7, 233, 426, 579, 685
Mph1103I	ATGCAT	1 cut(s)	486
MroXI	GAANNNNTTC	1 cut(s)	657
MseI	TTAA	1 cut(s)	513
MspA1I	CMGCKG	1 cut(s)	398
MspR9I	CCNGG	2 cut(s)	125, 633
MunI	CAATTG	1 cut(s)	76
MvaI	CCWGG	2 cut(s)	125, 633
MvnI	CGCG	1 cut(s)	342
MwoI	GCNNNNNNNGC	5 cut(s)	61, 70, 275, 419, 655
NcoI	CCATGG	1 cut(s)	260
NlaIII	CATG	7 cut(s)	35, 167, 264, 484, 488, 611, 699
NruI	TCGCGA	1 cut(s)	342
NsiI	ATGCAT	1 cut(s)	486
NspI	RCATGY	2 cut(s)	484, 488
PaeI	GCATGC	1 cut(s)	484
PdmI	GAANNNNTTC	1 cut(s)	657
PfeI	GAWTC	2 cut(s)	137, 217
PfoI	TCCNGGA	1 cut(s)	631
PkrI	GCNGC	1 cut(s)	83
PleI	GAGTC	1 cut(s)	352
PpsI	GAGTC	1 cut(s)	352
Psp6I	CCWGG	2 cut(s)	123, 631
PspFI	CCCAGC	1 cut(s)	641
PspGI	CCWGG	2 cut(s)	123, 631
PvuII	CAGCTG	1 cut(s)	398
RruI	TCGCGA	1 cut(s)	342
RsaI	GTAC	3 cut(s)	27, 129, 254
RsaNI	GTAC	3 cut(s)	26, 128, 253
SaqAI	TTAA	1 cut(s)	513
SatI	GCNGC	1 cut(s)	82
SchI	GAGTC	1 cut(s)	353
ScrFI	CCNGG	2 cut(s)	125, 633
SexAI	ACCWGGT	1 cut(s)	123
SphI	GCATGC	1 cut(s)	484
Sse9I	AATT	3 cut(s)	76, 385, 636
SsiI	CCGC	1 cut(s)	550
StyD4I	CCNGG	2 cut(s)	123, 631
StyI	CCWWGG	4 cut(s)	236, 260, 270, 538
TaaI	ACNGT	3 cut(s)	148, 589, 625
TasI	AATT	3 cut(s)	76, 385, 636
TatI	WGTACW	1 cut(s)	252
TfiI	GAWTC	2 cut(s)	137, 217
Tru1I	TTAA	1 cut(s)	513
Tru9I	TTAA	1 cut(s)	513
TscAI	CASTG	2 cut(s)	153, 285
TseI	GCWGC	1 cut(s)	81
TspDTI	ATGAA	1 cut(s)	550
TspRI	CASTG	2 cut(s)	153, 285
XagI	CCTNNNNNAGG	1 cut(s)	689
XapI	RAATTY	1 cut(s)	385
XceI	RCATGY	2 cut(s)	484, 488
XcmI	CCANNNNNNNNNTGG	1 cut(s)	277
XmnI	GAANNNNTTC	1 cut(s)	657
Zsp2I	ATGCAT	1 cut(s)	486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.