Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000936

Physical Location & Seq

Genomic Coordinates Reverse (-)

75626843 .. 75628714

Gene Structure 1872 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ52808

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGTCTAAAGCTCGCGTCGCCGTCGACATCAACGTCCTCCTCCGCAAGGATTTTCGGGACTACGAGTCCTTCATCGTCCAATGGGTGGGATTAGACGAGAAAGGAAAAAAGAACAAGAAGAAGGAACAAGGACAACGAACAGAGGAGGAGAAAGGGAGAGAAGAAAAGAAAAGAAAAGAAGAAGATGGGAAGGGAGAAAGAGATAGAGATTTTGGGCTCGATGATGACTTGGTCTTATGGAGAGTTTCTGTTCTAAAACAGGATGATGACCACTTGGTTTTGGAGTTGGGACTGAATTTTCTAACTGCTGATGATATGATTGCAATACTCGCTGTGAAGTTGAGGAAAAGACTGGGTTTCGGGATGTGGGCAAAGTTGCATATTATAGGCATGCATGTTGAAGGGAAGCTGCTGATTGGGGTTAAGTTTCTTCGTAGGTGGCCTTTCCTTGGCCGTCTGCGGATATGCTTCATTGAGCCTCCATATTTTCAGATGACCGTCAAGCCTATTTTTACACATGGCCTTGATGTTACAGTTCTTCCAGGAATTGCTGGGTGGCTCTTAATATTTTATCATGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005886 GO:0012505 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00290 ko00650 ko00660 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00290 map00650 map00660 map00770 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

C2 SMP_LBD

Protein Analysis

193

Amino Acids

22.53

Weight (kDa)

9.23

Isoelectric Point (pI)

44.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000936)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53590 AT3G14590 AT3G14590 AT3G14590 AT3G14590 AT3G14590
fragaria_vesca	FvH4_3g16980 FvH4_3g16980 FvH4_3g16980 FvH4_3g16980 FvH4_3g16980 FvH4_3g17020 FvH4_3g17020 FvH4_3g17020 FvH4_3g17020 FvH4_3g17020 FvH4_3g17020
malus_domestica	MD00G1185500.v1.1 MD00G1185600.v1.1 MD03G1254200.v1.1 MD03G1254900.v1.1 MD11G1275800.v1.1 MD11G1276000.v1.1
prunus_persica	Prupe.4G152200_v2.0.a1 Prupe.4G152200_v2.0.a1 Prupe.4G152300_v2.0.a1 Prupe.4G152300_v2.0.a1 Prupe.4G152300_v2.0.a1 Prupe.4G152300_v2.0.a1 Prupe.4G152300_v2.0.a1 Prupe.4G152300_v2.0.a1 Prupe.4G152300_v2.0.a1
pyrus_communis	pycom03g20170 pycom03g20190 pycom11g24400
rosa_chinensis	RchiOBHm_Chr2g0135571 RchiOBHm_Chr2g0159501 RchiOBHm_Chr2g0159511 RchiOBHm_Chr5g0028301 RchiOBHm_Chr5g0028351 RchiOBHm_Chr5g0039631
rosa_laevigata	RLG00000033080 RLG00000033088
rosa_multiflora	Rmu_sc0001020.1_g000001 Rmu_sc0002481.1_g000040 Rmu_sc0008526.1_g000010
rosa_roxburghii	Rroxscaffold_1G00051350 Rroxscaffold_1G00051420 Rroxscaffold_1G00051430
rosa_rugosa	Rorug05G0105600
rosa_samantha	Rh1AG292900 Rh4AG059100 Rh5AG199100 Rh5AG199600 Rh5BG197700 Rh5BG198100 Rh5CG217400 Rh5CG218100 Rh5DG199400 Rh5DG200000 Rh7DG370100
rosa_wichuraiana	Rw4G016870 Rw5G018160 Rw5G018190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	32
AccB7I	CCANNNNNTGG	1 cut(s)	85
AccI	GTMKAC	1 cut(s)	24
AccII	CGCG	1 cut(s)	15
AciI	CCGC	2 cut(s)	43, 460
AcoI	YGGCCR	1 cut(s)	451
AcsI	RAATTY	1 cut(s)	295
AfiI	CCNNNNNNNGG	3 cut(s)	46, 85, 449
AgsI	TTSAA	1 cut(s)	401
AhdI	GACNNNNNGTC	1 cut(s)	64
AjnI	CCWGG	1 cut(s)	541
AluBI	AGCT	2 cut(s)	11, 409
AluI	AGCT	2 cut(s)	11, 409
AoxI	GGCC	3 cut(s)	440, 451, 520
ApeKI	GCWGC	1 cut(s)	409
ApoI	RAATTY	1 cut(s)	295
BanII	GRGCYC	1 cut(s)	219
BbvI	GCAGC	1 cut(s)	396
BccI	CCATC	1 cut(s)	179
BceAI	ACGGC	2 cut(s)	5, 438
BciT130I	CCWGG	1 cut(s)	543
BisI	GCNGC	1 cut(s)	410
BlsI	GCNGC	1 cut(s)	411
Bme1390I	CCNGG	1 cut(s)	543
BmeRI	GACNNNNNGTC	1 cut(s)	64
BmrFI	CCNGG	1 cut(s)	543
BmrI	ACTGGG	1 cut(s)	362
BmuI	ACTGGG	1 cut(s)	362
BsaJI	CCNNGG	1 cut(s)	448
Bsc4I	CCNNNNNNNGG	3 cut(s)	46, 85, 449
Bse1I	ACTGG	1 cut(s)	357
BseBI	CCWGG	1 cut(s)	543
BseDI	CCNNGG	1 cut(s)	448
BseGI	GGATG	2 cut(s)	268, 369
BseLI	CCNNNNNNNGG	3 cut(s)	46, 85, 449
BseNI	ACTGG	1 cut(s)	357
BseRI	GAGGAG	3 cut(s)	29, 158, 161
BseXI	GCAGC	1 cut(s)	396
BseYI	CCCAGC	1 cut(s)	551
Bsh1236I	CGCG	1 cut(s)	15
BshFI	GGCC	3 cut(s)	442, 453, 522
BslFI	GGGAC	2 cut(s)	71, 303
BslI	CCNNNNNNNGG	3 cut(s)	46, 85, 449
BsmFI	GGGAC	2 cut(s)	71, 303
BsnI	GGCC	3 cut(s)	442, 453, 522
Bsp1286I	GDGCHC	1 cut(s)	219
BspACI	CCGC	2 cut(s)	43, 460
BspANI	GGCC	3 cut(s)	442, 453, 522
BspFNI	CGCG	1 cut(s)	15
BsrI	ACTGG	1 cut(s)	357
BssECI	CCNNGG	1 cut(s)	448
BssT1I	CCWWGG	1 cut(s)	448
Bst2UI	CCWGG	1 cut(s)	543
Bst4CI	ACNGT	2 cut(s)	499, 535
BstC8I	GCNNGC	2 cut(s)	13, 392
BstENI	CCTNNNNNAGG	1 cut(s)	44
BstF5I	GGATG	2 cut(s)	268, 369
BstFNI	CGCG	1 cut(s)	15
BstMWI	GCNNNNNNNGC	2 cut(s)	17, 329
BstNI	CCWGG	1 cut(s)	543
BstNSI	RCATGY	2 cut(s)	394, 398
BstSCI	CCNGG	1 cut(s)	541
BstUI	CGCG	1 cut(s)	15
BstV1I	GCAGC	1 cut(s)	396
BsuRI	GGCC	3 cut(s)	442, 453, 522
BtsCI	GGATG	2 cut(s)	268, 369
Cac8I	GCNNGC	2 cut(s)	13, 392
CseI	GACGC	1 cut(s)	4
CviAII	CATG	4 cut(s)	391, 395, 518, 575
CviJI	RGCY	9 cut(s)	11, 217, 409, 442, 453, 478, 505, 522, 559
CviKI_1	RGCY	9 cut(s)	11, 217, 409, 442, 453, 478, 505, 522, 559
DrdI	GACNNNNNNGTC	1 cut(s)	32
DriI	GACNNNNNGTC	1 cut(s)	64
DseDI	GACNNNNNNGTC	1 cut(s)	32
EaeI	YGGCCR	1 cut(s)	451
Eam1105I	GACNNNNNGTC	1 cut(s)	64
Eco130I	CCWWGG	1 cut(s)	448
Eco24I	GRGCYC	1 cut(s)	219
EcoNI	CCTNNNNNAGG	1 cut(s)	44
EcoRII	CCWGG	1 cut(s)	541
EcoT14I	CCWWGG	1 cut(s)	448
EcoT22I	ATGCAT	1 cut(s)	396
EcoT38I	GRGCYC	1 cut(s)	219
ErhI	CCWWGG	1 cut(s)	448
FaeI	CATG	4 cut(s)	394, 398, 521, 578
FaqI	GGGAC	2 cut(s)	71, 303
FatI	CATG	4 cut(s)	390, 394, 517, 574
FblI	GTMKAC	1 cut(s)	24
Fnu4HI	GCNGC	1 cut(s)	410
FokI	GGATG	2 cut(s)	275, 376
FriOI	GRGCYC	1 cut(s)	219
Fsp4HI	GCNGC	1 cut(s)	410
GluI	GCNGC	1 cut(s)	410
GsaI	CCCAGC	1 cut(s)	555
HaeIII	GGCC	3 cut(s)	442, 453, 522
HgaI	GACGC	1 cut(s)	4
Hin1II	CATG	4 cut(s)	394, 398, 521, 578
HincII	GTYRAC	1 cut(s)	25
HindII	GTYRAC	1 cut(s)	25
HinfI	GANTC	1 cut(s)	65
Hpy166II	GTNNAC	1 cut(s)	25
Hpy188I	TCNGA	1 cut(s)	492
Hpy188III	TCNNGA	2 cut(s)	56, 361
Hpy8I	GTNNAC	1 cut(s)	25
Hpy99I	CGWCG	2 cut(s)	20, 26
HpyAV	CCTTC	4 cut(s)	79, 115, 184, 395
HpyCH4III	ACNGT	2 cut(s)	499, 535
HpyCH4IV	ACGT	1 cut(s)	33
HpyCH4V	TGCA	3 cut(s)	323, 379, 394
HpyF10VI	GCNNNNNNNGC	2 cut(s)	17, 329
HpySE526I	ACGT	1 cut(s)	33
Hsp92II	CATG	4 cut(s)	394, 398, 521, 578
LpnPI	CCDG	5 cut(s)	245, 338, 528, 537, 555
Lsp1109I	GCAGC	1 cut(s)	396
MaeII	ACGT	1 cut(s)	33
MaeIII	GTNAC	1 cut(s)	529
MboII	GAAGA	6 cut(s)	130, 173, 191, 194, 422, 530
MhlI	GDGCHC	1 cut(s)	219
MluCI	AATT	2 cut(s)	295, 546
MlyI	GAGTC	1 cut(s)	74
MnlI	CCTC	6 cut(s)	47, 50, 136, 139, 336, 489
Mph1103I	ATGCAT	1 cut(s)	396
MseI	TTAA	2 cut(s)	423, 563
MspR9I	CCNGG	1 cut(s)	543
MvaI	CCWGG	1 cut(s)	543
MvnI	CGCG	1 cut(s)	15
MwoI	GCNNNNNNNGC	2 cut(s)	17, 329
NlaIII	CATG	4 cut(s)	394, 398, 521, 578
NsiI	ATGCAT	1 cut(s)	396
NspI	RCATGY	2 cut(s)	394, 398
PaeI	GCATGC	1 cut(s)	394
PcsI	WCGNNNNNNNCGW	1 cut(s)	30
PflFI	GACNNNGTC	1 cut(s)	230
PflMI	CCANNNNNTGG	1 cut(s)	85
PfoI	TCCNGGA	1 cut(s)	541
PkrI	GCNGC	1 cut(s)	411
PleI	GAGTC	1 cut(s)	73
PpsI	GAGTC	1 cut(s)	73
Psp6I	CCWGG	1 cut(s)	541
PspFI	CCCAGC	1 cut(s)	551
PspGI	CCWGG	1 cut(s)	541
PsyI	GACNNNGTC	1 cut(s)	230
SalI	GTCGAC	1 cut(s)	23
SaqAI	TTAA	2 cut(s)	423, 563
SatI	GCNGC	1 cut(s)	410
SchI	GAGTC	1 cut(s)	74
ScrFI	CCNGG	1 cut(s)	543
SduI	GDGCHC	1 cut(s)	219
SetI	ASST	4 cut(s)	13, 36, 411, 440
SphI	GCATGC	1 cut(s)	394
Sse9I	AATT	2 cut(s)	295, 546
SsiI	CCGC	2 cut(s)	43, 460
SspI	AATATT	1 cut(s)	567
StyD4I	CCNGG	1 cut(s)	541
StyI	CCWWGG	1 cut(s)	448
TaaI	ACNGT	2 cut(s)	499, 535
TaiI	ACGT	1 cut(s)	36
TaqI	TCGA	2 cut(s)	24, 219
TasI	AATT	2 cut(s)	295, 546
Tru1I	TTAA	2 cut(s)	423, 563
Tru9I	TTAA	2 cut(s)	423, 563
TseI	GCWGC	1 cut(s)	409
TspDTI	ATGAA	2 cut(s)	61, 460
Tth111I	GACNNNGTC	1 cut(s)	230
Van91I	CCANNNNNTGG	1 cut(s)	85
XagI	CCTNNNNNAGG	1 cut(s)	44
XapI	RAATTY	1 cut(s)	295
XceI	RCATGY	2 cut(s)	394, 398
XmiI	GTMKAC	1 cut(s)	24
Zsp2I	ATGCAT	1 cut(s)	396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.