Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000936

Physical Location & Seq

Genomic Coordinates Forward (+)

72058250 .. 72060356

Gene Structure 2107 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00051430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

ATGCTGGTTGTTGACATGGAGAAATTCGCCTCACCGCAGCAAGAGAGTTGGTTCTCTGTGAATGAGAAGGAGTCTCTTGGACATGTCAGAGTAGAAGTTATTGAAGCATCTGACATTAAAGCTGCAGATCTAAATGGATTATCTGACCCTTATGTTAAGGGTCAATTGGGCCTTTACCGGTTCAGGACAAAGACACAAAAGAAAACACTGGCTCCAAAATGGCATGAAGAATTCAAGATGCCCATTATTACATGGGATTCATCTACTGTGCTATCTATTGAAGTTCGTGACAAGGACCGATTTGTTGATGATTGCCTTGGATTCTGCTGCATTAACATTGGGGAGTATAGAGATGGCCAGAGGCATGACATGTGGTTGCCCCTTCAGAATATTAAAACAGGAAGGATCCATCTTGCAGTAACTGTGGTTGAAGATAATCCCAAGGGGGGTGATAATCCAAATGTTGAGGAAACACCAAATGTGGAAGATGAAAGAAAAAGGTTTGCCAATGACAGTAGTAATAAAAGTTCCTTCTCATCTGCATCATCAGAAAAGTTTGACAAAGTGGCAGATAACTTTGAGCCAATTGATGTTGATGGGCAAAGAGAGACTGGAATATGGGTCCATCACCCAGGAAGTGAAGTTTCACAAACTTGGGAGAGTAGAAAAGGAAAGAGTCGGCTCCTTGATAATGAGATTCAAAATGATAGTACTGGTGGCCATAGTTCAGTCACCTCTGTCTCCCCAACTAATGAGGACAGTGGCACTGAAAAGAATCACGAGGATAAACACAGGATGAGAGCAGTTCGCAAGGGTCTAAACAGGATCTGCTCGGTATTCCACAAGAATTCCAAAAAGGAGAATGATTCAAGCAGCTTTAGAGGGACTGTTGGATCTGGACATGCTAATATTCAGGAAATTAGTGAAAAAGATATTGCGGTAAGATTTATTGTGGAGGATGATCTTTCCAACCCTCAAGAGGGTAAGGGTTTGAAGGAAGGGGTTGTCACTTCTGGAGGGAGTGGTTCAAAGGGAAAGGACAAGGGCAAAGGTTCAGACAAGGCAAAGAGTTTCCTTAAACCAGCAAAAAAATCTTCTCGAGATTTTAGGAAGTGTCAAAGTGATTCTTACAAAGGGAGGGAAAGAAAAACTATAGAAGAATTTAACTCTACTGATGAGGATGACGCTCCTCCAAAACAGTTGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005886 GO:0012505 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00290 ko00650 ko00660 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00290 map00650 map00660 map00770 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

C2 SMP_LBD

Protein Analysis

402

Amino Acids

45.03

Weight (kDa)

6.31

Isoelectric Point (pI)

38.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	27 - 128	1.2e-22	C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000936)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53590 AT3G14590 AT3G14590 AT3G14590 AT3G14590 AT3G14590
fragaria_vesca	FvH4_3g16980 FvH4_3g16980 FvH4_3g16980 FvH4_3g16980 FvH4_3g16980 FvH4_3g17020 FvH4_3g17020 FvH4_3g17020 FvH4_3g17020 FvH4_3g17020 FvH4_3g17020
malus_domestica	MD00G1185500.v1.1 MD00G1185600.v1.1 MD03G1254200.v1.1 MD03G1254900.v1.1 MD11G1275800.v1.1 MD11G1276000.v1.1
prunus_persica	Prupe.4G152200_v2.0.a1 Prupe.4G152200_v2.0.a1 Prupe.4G152300_v2.0.a1 Prupe.4G152300_v2.0.a1 Prupe.4G152300_v2.0.a1 Prupe.4G152300_v2.0.a1 Prupe.4G152300_v2.0.a1 Prupe.4G152300_v2.0.a1 Prupe.4G152300_v2.0.a1
pyrus_communis	pycom03g20170 pycom03g20190 pycom11g24400
rosa_chinensis	RchiOBHm_Chr2g0135571 RchiOBHm_Chr2g0159501 RchiOBHm_Chr2g0159511 RchiOBHm_Chr5g0028301 RchiOBHm_Chr5g0028351 RchiOBHm_Chr5g0039631
rosa_laevigata	RLG00000033080 RLG00000033088
rosa_multiflora	Rmu_sc0001020.1_g000001 Rmu_sc0002481.1_g000040 Rmu_sc0008526.1_g000010
rosa_roxburghii	Rroxscaffold_1G00051350 Rroxscaffold_1G00051420 Rroxscaffold_1G00051430
rosa_rugosa	Rorug05G0105600
rosa_samantha	Rh1AG292900 Rh4AG059100 Rh5AG199100 Rh5AG199600 Rh5BG197700 Rh5BG198100 Rh5CG217400 Rh5CG218100 Rh5DG199400 Rh5DG200000 Rh7DG370100
rosa_wichuraiana	Rw4G016870 Rw5G018160 Rw5G018190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	35, 938
AclWI	GGATC	4 cut(s)	400, 413, 833, 901
AcoI	YGGCCR	2 cut(s)	355, 718
AcsI	RAATTY	4 cut(s)	23, 230, 847, 1160
AcuI	CTGAAG	1 cut(s)	368
AfaI	GTAC	1 cut(s)	712
AfiI	CCNNNNNNNGG	3 cut(s)	446, 979, 980
AflIII	ACRYGT	2 cut(s)	82, 369
AgeI	ACCGGT	1 cut(s)	177
AgsI	TTSAA	9 cut(s)	104, 235, 281, 431, 701, 870, 994, 1029, 1204
AjnI	CCWGG	1 cut(s)	631
AluBI	AGCT	2 cut(s)	122, 876
AluI	AGCT	2 cut(s)	122, 876
Alw26I	GTCTC	3 cut(s)	78, 602, 745
AlwI	GGATC	4 cut(s)	400, 413, 833, 901
AlwNI	CAGNNNCTG	2 cut(s)	422, 828
Ama87I	CYCGRG	1 cut(s)	1098
AoxI	GGCC	3 cut(s)	169, 355, 718
ApeKI	GCWGC	4 cut(s)	37, 122, 327, 873
ApoI	RAATTY	4 cut(s)	23, 230, 847, 1160
AsiGI	ACCGGT	1 cut(s)	177
AspS9I	GGNCC	3 cut(s)	169, 295, 622
AsuHPI	GGTGA	4 cut(s)	24, 461, 620, 724
AvaI	CYCGRG	1 cut(s)	1098
AvaII	GGWCC	2 cut(s)	295, 622
BalI	TGGCCA	2 cut(s)	357, 720
BamHI	GGATCC	1 cut(s)	405
BauI	CACGAG	1 cut(s)	779
BbvI	GCAGC	4 cut(s)	49, 109, 314, 885
BccI	CCATC	4 cut(s)	347, 417, 590, 633
BciT130I	CCWGG	1 cut(s)	633
BcoDI	GTCTC	3 cut(s)	78, 602, 745
BfmI	CTRYAG	2 cut(s)	123, 1152
BglII	AGATCT	1 cut(s)	127
BisI	GCNGC	4 cut(s)	38, 123, 328, 874
BlsI	GCNGC	4 cut(s)	39, 124, 329, 875
BmcAI	AGTACT	1 cut(s)	712
Bme1390I	CCNGG	1 cut(s)	633
Bme18I	GGWCC	2 cut(s)	295, 622
BmeT110I	CYCGRG	1 cut(s)	1098
BmgT120I	GGNCC	3 cut(s)	169, 295, 622
BmiI	GGNNCC	4 cut(s)	213, 407, 623, 683
BmrFI	CCNGG	1 cut(s)	633
BmsI	GCATC	3 cut(s)	116, 228, 551
BpmI	CTGGAG	1 cut(s)	1035
BpuEI	CTTGAG	1 cut(s)	960
BsaJI	CCNNGG	3 cut(s)	316, 441, 631
BsaWI	WCCGGW	1 cut(s)	177
BsaXI	ACNNNNNCTCC	2 cut(s)	196, 226
Bsc4I	CCNNNNNNNGG	3 cut(s)	446, 979, 980
Bse118I	RCCGGY	1 cut(s)	177
Bse1I	ACTGG	3 cut(s)	213, 616, 718
BseBI	CCWGG	1 cut(s)	633
BseDI	CCNNGG	3 cut(s)	316, 441, 631
BseGI	GGATG	3 cut(s)	801, 964, 1186
BseLI	CCNNNNNNNGG	3 cut(s)	446, 979, 980
BseNI	ACTGG	3 cut(s)	213, 616, 718
BseRI	GAGGAG	1 cut(s)	1179
BseXI	GCAGC	4 cut(s)	49, 109, 314, 885
BshFI	GGCC	3 cut(s)	171, 357, 720
BshTI	ACCGGT	1 cut(s)	177
BsiHKCI	CYCGRG	1 cut(s)	1098
BsiSI	CCGG	1 cut(s)	178
BslFI	GGGAC	1 cut(s)	898
BslI	CCNNNNNNNGG	3 cut(s)	446, 979, 980
BsmAI	GTCTC	3 cut(s)	78, 602, 745
BsmFI	GGGAC	1 cut(s)	898
BsnI	GGCC	3 cut(s)	171, 357, 720
BsoBI	CYCGRG	1 cut(s)	1098
Bsp143I	GATC	5 cut(s)	127, 405, 825, 893, 961
BspACI	CCGC	2 cut(s)	35, 938
BspANI	GGCC	3 cut(s)	171, 357, 720
BspLI	GGNNCC	4 cut(s)	213, 407, 623, 683
BspMAI	CTGCAG	1 cut(s)	127
BspPI	GGATC	4 cut(s)	400, 413, 833, 901
BsrFI	RCCGGY	1 cut(s)	177
BsrI	ACTGG	3 cut(s)	213, 616, 718
BssAI	RCCGGY	1 cut(s)	177
BssECI	CCNNGG	3 cut(s)	316, 441, 631
BssMI	GATC	5 cut(s)	127, 405, 825, 893, 961
BssSI	CACGAG	1 cut(s)	779
BssT1I	CCWWGG	2 cut(s)	316, 441
Bst2BI	CACGAG	1 cut(s)	779
Bst2UI	CCWGG	1 cut(s)	633
Bst4CI	ACNGT	6 cut(s)	268, 424, 515, 761, 889, 1200
BstF5I	GGATG	3 cut(s)	801, 964, 1186
BstKTI	GATC	5 cut(s)	130, 408, 828, 896, 964
BstMAI	GTCTC	3 cut(s)	78, 602, 745
BstMBI	GATC	5 cut(s)	127, 405, 825, 893, 961
BstNI	CCWGG	1 cut(s)	633
BstNSI	RCATGY	3 cut(s)	86, 373, 905
BstSCI	CCNGG	1 cut(s)	631
BstSFI	CTRYAG	2 cut(s)	123, 1152
BstV1I	GCAGC	4 cut(s)	49, 109, 314, 885
BstX2I	RGATCY	4 cut(s)	127, 405, 825, 893
BstYI	RGATCY	4 cut(s)	127, 405, 825, 893
BsuRI	GGCC	3 cut(s)	171, 357, 720
BtsCI	GGATG	3 cut(s)	801, 964, 1186
BtsIMutI	CAGTG	3 cut(s)	206, 765, 766
CaiI	CAGNNNCTG	2 cut(s)	422, 828
Cfr10I	RCCGGY	1 cut(s)	177
Cfr13I	GGNCC	3 cut(s)	169, 295, 622
CseI	GACGC	1 cut(s)	1193
Csp6I	GTAC	1 cut(s)	711
CspAI	ACCGGT	1 cut(s)	177
CviAII	CATG	7 cut(s)	16, 83, 224, 252, 365, 370, 902
CviJI	RGCY	8 cut(s)	122, 171, 212, 357, 583, 682, 720, 876
CviKI_1	RGCY	8 cut(s)	122, 171, 212, 357, 583, 682, 720, 876
CviQI	GTAC	1 cut(s)	711
DpnI	GATC	5 cut(s)	129, 407, 827, 895, 963
DpnII	GATC	5 cut(s)	127, 405, 825, 893, 961
EaeI	YGGCCR	2 cut(s)	355, 718
Eco130I	CCWWGG	2 cut(s)	316, 441
Eco47I	GGWCC	2 cut(s)	295, 622
Eco57I	CTGAAG	1 cut(s)	368
Eco88I	CYCGRG	1 cut(s)	1098
EcoRI	GAATTC	2 cut(s)	230, 847
EcoRII	CCWGG	1 cut(s)	631
EcoT14I	CCWWGG	2 cut(s)	316, 441
ErhI	CCWWGG	2 cut(s)	316, 441
FaeI	CATG	7 cut(s)	19, 86, 227, 255, 368, 373, 905
FalI	AAGNNNNNCTT	2 cut(s)	1111, 1143
FaqI	GGGAC	1 cut(s)	898
FatI	CATG	7 cut(s)	15, 82, 223, 251, 364, 369, 901
Fnu4HI	GCNGC	4 cut(s)	38, 123, 328, 874
FokI	GGATG	3 cut(s)	808, 971, 1193
Fsp4HI	GCNGC	4 cut(s)	38, 123, 328, 874
GluI	GCNGC	4 cut(s)	38, 123, 328, 874
GsuI	CTGGAG	1 cut(s)	1035
HaeIII	GGCC	3 cut(s)	171, 357, 720
HapII	CCGG	1 cut(s)	178
HgaI	GACGC	1 cut(s)	1193
Hin1II	CATG	7 cut(s)	19, 86, 227, 255, 368, 373, 905
HincII	GTYRAC	1 cut(s)	13
HindII	GTYRAC	1 cut(s)	13
HinfI	GANTC	8 cut(s)	71, 257, 321, 676, 697, 775, 866, 1124
HpaII	CCGG	1 cut(s)	178
HphI	GGTGA	4 cut(s)	24, 461, 620, 724
Hpy166II	GTNNAC	1 cut(s)	13
Hpy188I	TCNGA	6 cut(s)	89, 112, 145, 387, 550, 1057
Hpy8I	GTNNAC	1 cut(s)	13
HpyAV	CCTTC	6 cut(s)	61, 392, 396, 541, 988, 992
HpyCH4III	ACNGT	6 cut(s)	268, 424, 515, 761, 889, 1200
HpyCH4V	TGCA	4 cut(s)	125, 330, 416, 542
Hsp92II	CATG	7 cut(s)	19, 86, 227, 255, 368, 373, 905
Kzo9I	GATC	5 cut(s)	127, 405, 825, 893, 961
LmnI	GCTCC	3 cut(s)	217, 687, 1192
Lsp1109I	GCAGC	4 cut(s)	49, 109, 314, 885
LweI	GCATC	3 cut(s)	116, 228, 551
MaeIII	GTNAC	4 cut(s)	287, 418, 730, 1006
MalI	GATC	5 cut(s)	129, 407, 827, 895, 963
MboI	GATC	5 cut(s)	127, 405, 825, 893, 961
MboII	GAAGA	5 cut(s)	239, 443, 497, 1086, 1169
MfeI	CAATTG	2 cut(s)	164, 585
MflI	RGATCY	4 cut(s)	127, 405, 825, 893
MlsI	TGGCCA	2 cut(s)	357, 720
MluCI	AATT	7 cut(s)	23, 164, 230, 585, 847, 918, 1160
MluNI	TGGCCA	2 cut(s)	357, 720
MlyI	GAGTC	2 cut(s)	80, 685
MmeI	TCCRAC	2 cut(s)	871, 993
Mox20I	TGGCCA	2 cut(s)	357, 720
MscI	TGGCCA	2 cut(s)	357, 720
MseI	TTAA	6 cut(s)	117, 156, 333, 393, 1077, 1164
Msp20I	TGGCCA	2 cut(s)	357, 720
MspI	CCGG	1 cut(s)	178
MspR9I	CCNGG	1 cut(s)	633
MunI	CAATTG	2 cut(s)	164, 585
MvaI	CCWGG	1 cut(s)	633
NdeII	GATC	5 cut(s)	127, 405, 825, 893, 961
NlaIII	CATG	7 cut(s)	19, 86, 227, 255, 368, 373, 905
NlaIV	GGNNCC	4 cut(s)	213, 407, 623, 683
NmuCI	GTSAC	3 cut(s)	287, 730, 1006
NspI	RCATGY	3 cut(s)	86, 373, 905
PaeR7I	CTCGAG	1 cut(s)	1098
PciI	ACATGT	2 cut(s)	82, 369
PfeI	GAWTC	6 cut(s)	257, 321, 697, 775, 866, 1124
PinAI	ACCGGT	1 cut(s)	177
PkrI	GCNGC	4 cut(s)	39, 124, 329, 875
PleI	GAGTC	2 cut(s)	79, 684
PpsI	GAGTC	2 cut(s)	79, 684
PscI	ACATGT	2 cut(s)	82, 369
Psp6I	CCWGG	1 cut(s)	631
PspGI	CCWGG	1 cut(s)	631
PspN4I	GGNNCC	4 cut(s)	213, 407, 623, 683
PspPI	GGNCC	3 cut(s)	169, 295, 622
PsrI	GAACNNNNNNTAC	2 cut(s)	511, 543
PstI	CTGCAG	1 cut(s)	127
PstNI	CAGNNNCTG	2 cut(s)	422, 828
PsuI	RGATCY	4 cut(s)	127, 405, 825, 893
RsaI	GTAC	1 cut(s)	712
RsaNI	GTAC	1 cut(s)	711
SaqAI	TTAA	6 cut(s)	117, 156, 333, 393, 1077, 1164
SatI	GCNGC	4 cut(s)	38, 123, 328, 874
Sau3AI	GATC	5 cut(s)	127, 405, 825, 893, 961
Sau96I	GGNCC	3 cut(s)	169, 295, 622
ScaI	AGTACT	1 cut(s)	712
SchI	GAGTC	2 cut(s)	80, 685
ScrFI	CCNGG	1 cut(s)	633
SetI	ASST	5 cut(s)	124, 503, 737, 878, 1054
SfaNI	GCATC	3 cut(s)	116, 228, 551
SfcI	CTRYAG	2 cut(s)	123, 1152
Sfr274I	CTCGAG	1 cut(s)	1098
SinI	GGWCC	2 cut(s)	295, 622
SlaI	CTCGAG	1 cut(s)	1098
SmlI	CTYRAG	2 cut(s)	975, 1098
SmoI	CTYRAG	2 cut(s)	975, 1098
Sse9I	AATT	7 cut(s)	23, 164, 230, 585, 847, 918, 1160
SsiI	CCGC	2 cut(s)	35, 938
SspI	AATATT	2 cut(s)	391, 910
StyD4I	CCNGG	1 cut(s)	631
StyI	CCWWGG	2 cut(s)	316, 441
TaaI	ACNGT	6 cut(s)	268, 424, 515, 761, 889, 1200
TaqI	TCGA	1 cut(s)	1099
TaqII	GACCGA	1 cut(s)	312
TasI	AATT	7 cut(s)	23, 164, 230, 585, 847, 918, 1160
TatI	WGTACW	1 cut(s)	710
TfiI	GAWTC	6 cut(s)	257, 321, 697, 775, 866, 1124
Tru1I	TTAA	6 cut(s)	117, 156, 333, 393, 1077, 1164
Tru9I	TTAA	6 cut(s)	117, 156, 333, 393, 1077, 1164
TscAI	CASTG	3 cut(s)	213, 766, 772
TseFI	GTSAC	3 cut(s)	287, 730, 1006
TseI	GCWGC	4 cut(s)	37, 122, 327, 873
Tsp45I	GTSAC	3 cut(s)	287, 730, 1006
TspDTI	ATGAA	3 cut(s)	240, 249, 504
TspRI	CASTG	3 cut(s)	213, 766, 772
VpaK11BI	GGWCC	2 cut(s)	295, 622
XapI	RAATTY	4 cut(s)	23, 230, 847, 1160
XceI	RCATGY	3 cut(s)	86, 373, 905
XhoI	CTCGAG	1 cut(s)	1098
ZrmI	AGTACT	1 cut(s)	712

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.