Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0000936

Physical Location & Seq

Genomic Coordinates Reverse (-)

50117910 .. 50120396

Gene Structure 2487 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG370100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGCAGGTTTTGGAGTTGGGACTGAATTTTCTGACAGCTGATGATATGATTGCAATACTCGCTGTGAAGTTGAGGAAAAGACTGGGTTTCAGGATGTGGGCAAAGTTGCATATTACAGGCATGCATGTTGAAGGGAAGGAAAAGCTTCTTTCCATTGCCTTTGAGCAGACCCTTGTTGAGCCAAATATGCTGGTTGTTGACATGGAGAAATTCGCCTCACCGCAGCAAGAGAGTTGGTTCTCTGTGAATGAAAAGGAATCTCTTGGACATGTCAGAGTAGAAGTTATTGAAGCATCTGACATCAAAGCTGCAGATCTAAATGGATTATCTGACCCTTATGTTAAGGGTCAATTGGGCCTTTACTGGTTCAGGACGAAGACACAAAAGAAAACACTGGCTCCAAAATGGCATGAAGAATTCAAGATGCCCATTATTACATGGGATTCATCTACTGTGCTATCTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005886 GO:0012505 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00290 ko00650 ko00660 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00290 map00650 map00660 map00770 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

C2 SMP_LBD

Protein Analysis

155

Amino Acids

17.75

Weight (kDa)

6.43

Isoelectric Point (pI)

34.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	89 - 154	5.4e-14	C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000936)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53590 AT3G14590 AT3G14590 AT3G14590 AT3G14590 AT3G14590
fragaria_vesca	FvH4_3g16980 FvH4_3g16980 FvH4_3g16980 FvH4_3g16980 FvH4_3g16980 FvH4_3g17020 FvH4_3g17020 FvH4_3g17020 FvH4_3g17020 FvH4_3g17020 FvH4_3g17020
malus_domestica	MD00G1185500.v1.1 MD00G1185600.v1.1 MD03G1254200.v1.1 MD03G1254900.v1.1 MD11G1275800.v1.1 MD11G1276000.v1.1
prunus_persica	Prupe.4G152200_v2.0.a1 Prupe.4G152200_v2.0.a1 Prupe.4G152300_v2.0.a1 Prupe.4G152300_v2.0.a1 Prupe.4G152300_v2.0.a1 Prupe.4G152300_v2.0.a1 Prupe.4G152300_v2.0.a1 Prupe.4G152300_v2.0.a1 Prupe.4G152300_v2.0.a1
pyrus_communis	pycom03g20170 pycom03g20190 pycom11g24400
rosa_chinensis	RchiOBHm_Chr2g0135571 RchiOBHm_Chr2g0159501 RchiOBHm_Chr2g0159511 RchiOBHm_Chr5g0028301 RchiOBHm_Chr5g0028351 RchiOBHm_Chr5g0039631
rosa_laevigata	RLG00000033080 RLG00000033088
rosa_multiflora	Rmu_sc0001020.1_g000001 Rmu_sc0002481.1_g000040 Rmu_sc0008526.1_g000010
rosa_roxburghii	Rroxscaffold_1G00051350 Rroxscaffold_1G00051420 Rroxscaffold_1G00051430
rosa_rugosa	Rorug05G0105600
rosa_samantha	Rh1AG292900 Rh4AG059100 Rh5AG199100 Rh5AG199600 Rh5BG197700 Rh5BG198100 Rh5CG217400 Rh5CG218100 Rh5DG199400 Rh5DG200000 Rh7DG370100
rosa_wichuraiana	Rw4G016870 Rw5G018160 Rw5G018190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	221
AcsI	RAATTY	3 cut(s)	25, 209, 416
AflIII	ACRYGT	1 cut(s)	268
AgsI	TTSAA	3 cut(s)	131, 290, 421
AluBI	AGCT	3 cut(s)	38, 145, 308
AluI	AGCT	3 cut(s)	38, 145, 308
AoxI	GGCC	1 cut(s)	355
ApeKI	GCWGC	2 cut(s)	223, 308
ApoI	RAATTY	3 cut(s)	25, 209, 416
Asp700I	GAANNNNTTC	1 cut(s)	144
AspS9I	GGNCC	1 cut(s)	355
AsuHPI	GGTGA	1 cut(s)	210
BbsI	GAAGAC	1 cut(s)	383
BbvI	GCAGC	2 cut(s)	235, 295
BfmI	CTRYAG	1 cut(s)	309
BglII	AGATCT	1 cut(s)	313
BisI	GCNGC	2 cut(s)	224, 309
BlsI	GCNGC	2 cut(s)	225, 310
BmgT120I	GGNCC	1 cut(s)	355
BmiI	GGNNCC	1 cut(s)	399
BmrI	ACTGGG	1 cut(s)	92
BmsI	GCATC	2 cut(s)	302, 414
BmuI	ACTGGG	1 cut(s)	92
BpiI	GAAGAC	1 cut(s)	383
BsaXI	ACNNNNNCTCC	2 cut(s)	382, 412
Bse1I	ACTGG	3 cut(s)	87, 368, 399
Bse3DI	GCAATG	1 cut(s)	153
BseGI	GGATG	1 cut(s)	99
BseMI	GCAATG	1 cut(s)	153
BseNI	ACTGG	3 cut(s)	87, 368, 399
BseXI	GCAGC	2 cut(s)	235, 295
BshFI	GGCC	1 cut(s)	357
BslFI	GGGAC	1 cut(s)	33
BsmFI	GGGAC	1 cut(s)	33
BsnI	GGCC	1 cut(s)	357
Bsp143I	GATC	1 cut(s)	313
BspACI	CCGC	1 cut(s)	221
BspANI	GGCC	1 cut(s)	357
BspLI	GGNNCC	1 cut(s)	399
BspMAI	CTGCAG	1 cut(s)	313
BsrDI	GCAATG	1 cut(s)	153
BsrI	ACTGG	3 cut(s)	87, 368, 399
BssMI	GATC	1 cut(s)	313
Bst4CI	ACNGT	1 cut(s)	454
BstC8I	GCNNGC	1 cut(s)	122
BstF5I	GGATG	1 cut(s)	99
BstKTI	GATC	1 cut(s)	316
BstMBI	GATC	1 cut(s)	313
BstMWI	GCNNNNNNNGC	2 cut(s)	59, 187
BstNSI	RCATGY	3 cut(s)	124, 128, 272
BstSFI	CTRYAG	1 cut(s)	309
BstV1I	GCAGC	2 cut(s)	235, 295
BstV2I	GAAGAC	1 cut(s)	383
BstX2I	RGATCY	1 cut(s)	313
BstYI	RGATCY	1 cut(s)	313
BsuRI	GGCC	1 cut(s)	357
BtsCI	GGATG	1 cut(s)	99
BtsIMutI	CAGTG	1 cut(s)	392
Cac8I	GCNNGC	1 cut(s)	122
Cfr13I	GGNCC	1 cut(s)	355
CviAII	CATG	6 cut(s)	121, 125, 202, 269, 410, 438
CviJI	RGCY	6 cut(s)	38, 145, 181, 308, 357, 398
CviKI_1	RGCY	6 cut(s)	38, 145, 181, 308, 357, 398
DpnI	GATC	1 cut(s)	315
DpnII	GATC	1 cut(s)	313
EcoRI	GAATTC	1 cut(s)	416
EcoT22I	ATGCAT	1 cut(s)	126
FaeI	CATG	6 cut(s)	124, 128, 205, 272, 413, 441
FaqI	GGGAC	1 cut(s)	33
FatI	CATG	6 cut(s)	120, 124, 201, 268, 409, 437
Fnu4HI	GCNGC	2 cut(s)	224, 309
FokI	GGATG	1 cut(s)	106
Fsp4HI	GCNGC	2 cut(s)	224, 309
GluI	GCNGC	2 cut(s)	224, 309
HaeIII	GGCC	1 cut(s)	357
Hin1II	CATG	6 cut(s)	124, 128, 205, 272, 413, 441
HincII	GTYRAC	1 cut(s)	199
HindII	GTYRAC	1 cut(s)	199
HindIII	AAGCTT	1 cut(s)	143
HinfI	GANTC	2 cut(s)	257, 443
HphI	GGTGA	1 cut(s)	210
Hpy166II	GTNNAC	1 cut(s)	199
Hpy188I	TCNGA	4 cut(s)	33, 275, 298, 331
Hpy188III	TCNNGA	3 cut(s)	91, 370, 421
Hpy8I	GTNNAC	1 cut(s)	199
HpyAV	CCTTC	2 cut(s)	125, 130
HpyCH4III	ACNGT	1 cut(s)	454
HpyCH4V	TGCA	5 cut(s)	4, 53, 109, 124, 311
HpyF10VI	GCNNNNNNNGC	2 cut(s)	59, 187
Hsp92II	CATG	6 cut(s)	124, 128, 205, 272, 413, 441
Kzo9I	GATC	1 cut(s)	313
LmnI	GCTCC	1 cut(s)	403
LpnPI	CCDG	7 cut(s)	68, 76, 102, 176, 349, 355, 380
Lsp1109I	GCAGC	2 cut(s)	235, 295
LweI	GCATC	2 cut(s)	302, 414
MalI	GATC	1 cut(s)	315
MboI	GATC	1 cut(s)	313
MboII	GAAGA	2 cut(s)	388, 425
MfeI	CAATTG	1 cut(s)	350
MflI	RGATCY	1 cut(s)	313
MluCI	AATT	4 cut(s)	25, 209, 350, 416
MnlI	CCTC	2 cut(s)	66, 226
Mph1103I	ATGCAT	1 cut(s)	126
MroXI	GAANNNNTTC	1 cut(s)	144
MseI	TTAA	1 cut(s)	342
MspA1I	CMGCKG	1 cut(s)	38
MunI	CAATTG	1 cut(s)	350
MwoI	GCNNNNNNNGC	2 cut(s)	59, 187
NdeII	GATC	1 cut(s)	313
NlaIII	CATG	6 cut(s)	124, 128, 205, 272, 413, 441
NlaIV	GGNNCC	1 cut(s)	399
NsiI	ATGCAT	1 cut(s)	126
NspI	RCATGY	3 cut(s)	124, 128, 272
PaeI	GCATGC	1 cut(s)	124
PciI	ACATGT	1 cut(s)	268
PdmI	GAANNNNTTC	1 cut(s)	144
PfeI	GAWTC	2 cut(s)	257, 443
PkrI	GCNGC	2 cut(s)	225, 310
PscI	ACATGT	1 cut(s)	268
PspN4I	GGNNCC	1 cut(s)	399
PspPI	GGNCC	1 cut(s)	355
PstI	CTGCAG	1 cut(s)	313
PsuI	RGATCY	1 cut(s)	313
PvuII	CAGCTG	1 cut(s)	38
SaqAI	TTAA	1 cut(s)	342
SatI	GCNGC	2 cut(s)	224, 309
Sau3AI	GATC	1 cut(s)	313
Sau96I	GGNCC	1 cut(s)	355
SetI	ASST	4 cut(s)	9, 40, 147, 310
SfaNI	GCATC	2 cut(s)	302, 414
SfcI	CTRYAG	1 cut(s)	309
SphI	GCATGC	1 cut(s)	124
Sse9I	AATT	4 cut(s)	25, 209, 350, 416
SsiI	CCGC	1 cut(s)	221
TaaI	ACNGT	1 cut(s)	454
TasI	AATT	4 cut(s)	25, 209, 350, 416
TfiI	GAWTC	2 cut(s)	257, 443
Tru1I	TTAA	1 cut(s)	342
Tru9I	TTAA	1 cut(s)	342
TscAI	CASTG	1 cut(s)	399
TseI	GCWGC	2 cut(s)	223, 308
TspDTI	ATGAA	3 cut(s)	264, 426, 435
TspRI	CASTG	1 cut(s)	399
XapI	RAATTY	3 cut(s)	25, 209, 416
XceI	RCATGY	3 cut(s)	124, 128, 272
XmnI	GAANNNNTTC	1 cut(s)	144
Zsp2I	ATGCAT	1 cut(s)	126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.