Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0000936

Physical Location & Seq

Genomic Coordinates Reverse (-)

12432435 .. 12435531

Gene Structure 3097 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG059100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGTCTAAAGCTCGCATCGCCGTCGACATCAACGTCCTCCGCCGAAGGATTTTTGGGACTACGAGTCCTTCATCGTCCAATGGCGCTGATGATATGATTGCAATACTCGCTGTGAAGTTGAGGAAAAGACTGGGTTTCGGGATGTGGGCAAAGTTGCATATTACAGGCATGCATGTTCAAGGGAAGCTATTGATTGGGGTTAAGTTTCTTCGTAGGTGGCCTTTCCTTGGTCGTCTGCGGATATGCTTCATTGAGCCTCCATATTTTCAGATGACCGTCAAGCCTATTTTTACACATGGCCTTGATGTTACAGTTCTTCCAGGAATTGCTGGGTGGCTGGAAAAGCTTCTTTCCATTGCCTTTGAGCAGACCCTTGTTAAGCCAAATATGCTGGTTGTTGACATGGAGAAATCGCCTCACCGCAGCAAGGAATCTCTTGGACATGTCAAAGTAGAAGTTATTGAAGCATCTGACATCAAAGCTGCAGATCTAAATGGATTATCTGACCCTTATGTTAAGGGTCAATTGGGCCTTTACCGGTTCAGGACGAAGACACAAAAGAAAACACTGGCTCCAAAATGGCATGAAGAATTCAAGATGCCCATTATTTCATGGGATTCATCTACTGTGCTATCTATTGAAGTTTGTGACAAGGACCGATTTGTTGATGATTACCTTGGGTTTGTTTCTGAACTTATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005886 GO:0012505 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00290 ko00650 ko00660 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00290 map00650 map00660 map00770 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

C2 SMP_LBD

Protein Analysis

233

Amino Acids

26.41

Weight (kDa)

9.64

Isoelectric Point (pI)

47.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SMP_MUG190-like	PF25669	58 - 137	1.7e-08	MUG190-like SMP domain
C2	PF00168	147 - 229	4.4e-19	C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000936)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53590 AT3G14590 AT3G14590 AT3G14590 AT3G14590 AT3G14590
fragaria_vesca	FvH4_3g16980 FvH4_3g16980 FvH4_3g16980 FvH4_3g16980 FvH4_3g16980 FvH4_3g17020 FvH4_3g17020 FvH4_3g17020 FvH4_3g17020 FvH4_3g17020 FvH4_3g17020
malus_domestica	MD00G1185500.v1.1 MD00G1185600.v1.1 MD03G1254200.v1.1 MD03G1254900.v1.1 MD11G1275800.v1.1 MD11G1276000.v1.1
prunus_persica	Prupe.4G152200_v2.0.a1 Prupe.4G152200_v2.0.a1 Prupe.4G152300_v2.0.a1 Prupe.4G152300_v2.0.a1 Prupe.4G152300_v2.0.a1 Prupe.4G152300_v2.0.a1 Prupe.4G152300_v2.0.a1 Prupe.4G152300_v2.0.a1 Prupe.4G152300_v2.0.a1
pyrus_communis	pycom03g20170 pycom03g20190 pycom11g24400
rosa_chinensis	RchiOBHm_Chr2g0135571 RchiOBHm_Chr2g0159501 RchiOBHm_Chr2g0159511 RchiOBHm_Chr5g0028301 RchiOBHm_Chr5g0028351 RchiOBHm_Chr5g0039631
rosa_laevigata	RLG00000033080 RLG00000033088
rosa_multiflora	Rmu_sc0001020.1_g000001 Rmu_sc0002481.1_g000040 Rmu_sc0008526.1_g000010
rosa_roxburghii	Rroxscaffold_1G00051350 Rroxscaffold_1G00051420 Rroxscaffold_1G00051430
rosa_rugosa	Rorug05G0105600
rosa_samantha	Rh1AG292900 Rh4AG059100 Rh5AG199100 Rh5AG199600 Rh5BG197700 Rh5BG198100 Rh5CG217400 Rh5CG218100 Rh5DG199400 Rh5DG200000 Rh7DG370100
rosa_wichuraiana	Rw4G016870 Rw5G018160 Rw5G018190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	32
AccI	GTMKAC	1 cut(s)	24
AciI	CCGC	3 cut(s)	40, 238, 421
AcsI	RAATTY	1 cut(s)	590
AfiI	CCNNNNNNNGG	2 cut(s)	227, 427
AflIII	ACRYGT	1 cut(s)	442
AgeI	ACCGGT	1 cut(s)	537
AgsI	TTSAA	4 cut(s)	179, 464, 595, 641
AhdI	GACNNNNNGTC	1 cut(s)	63
AjnI	CCWGG	1 cut(s)	319
AluBI	AGCT	4 cut(s)	11, 187, 346, 482
AluI	AGCT	4 cut(s)	11, 187, 346, 482
AoxI	GGCC	3 cut(s)	218, 298, 529
ApeKI	GCWGC	2 cut(s)	423, 482
ApoI	RAATTY	1 cut(s)	590
AsiGI	ACCGGT	1 cut(s)	537
Asp700I	GAANNNNTTC	1 cut(s)	345
AspLEI	GCGC	1 cut(s)	86
AspS9I	GGNCC	2 cut(s)	529, 655
AsuHPI	GGTGA	1 cut(s)	410
AvaII	GGWCC	1 cut(s)	655
BbsI	GAAGAC	1 cut(s)	557
BbvI	GCAGC	2 cut(s)	435, 469
BceAI	ACGGC	1 cut(s)	5
BcgI	CGANNNNNNTGC	2 cut(s)	4, 38
BciT130I	CCWGG	1 cut(s)	321
BfmI	CTRYAG	1 cut(s)	483
BfoI	RGCGCY	1 cut(s)	87
BglII	AGATCT	1 cut(s)	487
BisI	GCNGC	2 cut(s)	424, 483
BlsI	GCNGC	2 cut(s)	425, 484
Bme1390I	CCNGG	1 cut(s)	321
Bme18I	GGWCC	1 cut(s)	655
BmeRI	GACNNNNNGTC	1 cut(s)	63
BmgT120I	GGNCC	2 cut(s)	529, 655
BmiI	GGNNCC	1 cut(s)	573
BmrFI	CCNGG	1 cut(s)	321
BmrI	ACTGGG	1 cut(s)	140
BmsI	GCATC	3 cut(s)	24, 476, 588
BmuI	ACTGGG	1 cut(s)	140
BpiI	GAAGAC	1 cut(s)	557
BsaJI	CCNNGG	2 cut(s)	226, 676
BsaWI	WCCGGW	1 cut(s)	537
BsaXI	ACNNNNNCTCC	2 cut(s)	556, 586
Bsc4I	CCNNNNNNNGG	2 cut(s)	227, 427
Bse118I	RCCGGY	1 cut(s)	537
Bse1I	ACTGG	2 cut(s)	135, 573
Bse3DI	GCAATG	1 cut(s)	354
BseBI	CCWGG	1 cut(s)	321
BseDI	CCNNGG	2 cut(s)	226, 676
BseGI	GGATG	1 cut(s)	147
BseLI	CCNNNNNNNGG	2 cut(s)	227, 427
BseMI	GCAATG	1 cut(s)	354
BseNI	ACTGG	2 cut(s)	135, 573
BseXI	GCAGC	2 cut(s)	435, 469
BseYI	CCCAGC	1 cut(s)	329
BshFI	GGCC	3 cut(s)	220, 300, 531
BshTI	ACCGGT	1 cut(s)	537
BsiSI	CCGG	1 cut(s)	538
BslFI	GGGAC	1 cut(s)	70
BslI	CCNNNNNNNGG	2 cut(s)	227, 427
BsmFI	GGGAC	1 cut(s)	70
BsnI	GGCC	3 cut(s)	220, 300, 531
Bsp143I	GATC	1 cut(s)	487
BspACI	CCGC	3 cut(s)	40, 238, 421
BspANI	GGCC	3 cut(s)	220, 300, 531
BspLI	GGNNCC	1 cut(s)	573
BspMAI	CTGCAG	1 cut(s)	487
BsrDI	GCAATG	1 cut(s)	354
BsrFI	RCCGGY	1 cut(s)	537
BsrI	ACTGG	2 cut(s)	135, 573
BssAI	RCCGGY	1 cut(s)	537
BssECI	CCNNGG	2 cut(s)	226, 676
BssMI	GATC	1 cut(s)	487
BssT1I	CCWWGG	2 cut(s)	226, 676
Bst2UI	CCWGG	1 cut(s)	321
Bst4CI	ACNGT	3 cut(s)	277, 313, 628
BstC8I	GCNNGC	2 cut(s)	13, 170
BstF5I	GGATG	1 cut(s)	147
BstH2I	RGCGCY	1 cut(s)	87
BstHHI	GCGC	1 cut(s)	86
BstKTI	GATC	1 cut(s)	490
BstMBI	GATC	1 cut(s)	487
BstMWI	GCNNNNNNNGC	4 cut(s)	17, 107, 343, 388
BstNI	CCWGG	1 cut(s)	321
BstNSI	RCATGY	3 cut(s)	172, 176, 446
BstSCI	CCNGG	1 cut(s)	319
BstSFI	CTRYAG	1 cut(s)	483
BstV1I	GCAGC	2 cut(s)	435, 469
BstV2I	GAAGAC	1 cut(s)	557
BstX2I	RGATCY	1 cut(s)	487
BstYI	RGATCY	1 cut(s)	487
BsuRI	GGCC	3 cut(s)	220, 300, 531
BtsCI	GGATG	1 cut(s)	147
BtsIMutI	CAGTG	1 cut(s)	566
Cac8I	GCNNGC	2 cut(s)	13, 170
CfoI	GCGC	1 cut(s)	86
Cfr10I	RCCGGY	1 cut(s)	537
Cfr13I	GGNCC	2 cut(s)	529, 655
CspAI	ACCGGT	1 cut(s)	537
CviAII	CATG	7 cut(s)	169, 173, 296, 403, 443, 584, 612
DpnI	GATC	1 cut(s)	489
DpnII	GATC	1 cut(s)	487
DrdI	GACNNNNNNGTC	1 cut(s)	32
DriI	GACNNNNNGTC	1 cut(s)	63
DseDI	GACNNNNNNGTC	1 cut(s)	32
Eam1105I	GACNNNNNGTC	1 cut(s)	63
EciI	GGCGGA	1 cut(s)	29
Eco130I	CCWWGG	2 cut(s)	226, 676
Eco47I	GGWCC	1 cut(s)	655
EcoRI	GAATTC	1 cut(s)	590
EcoRII	CCWGG	1 cut(s)	319
EcoT14I	CCWWGG	2 cut(s)	226, 676
EcoT22I	ATGCAT	1 cut(s)	174
ErhI	CCWWGG	2 cut(s)	226, 676
FaeI	CATG	7 cut(s)	172, 176, 299, 406, 446, 587, 615
FaqI	GGGAC	1 cut(s)	70
FatI	CATG	7 cut(s)	168, 172, 295, 402, 442, 583, 611
FblI	GTMKAC	1 cut(s)	24
Fnu4HI	GCNGC	2 cut(s)	424, 483
FokI	GGATG	1 cut(s)	154
Fsp4HI	GCNGC	2 cut(s)	424, 483
GlaI	GCGC	1 cut(s)	85
GluI	GCNGC	2 cut(s)	424, 483
GsaI	CCCAGC	1 cut(s)	333
HaeII	RGCGCY	1 cut(s)	87
HaeIII	GGCC	3 cut(s)	220, 300, 531
HapII	CCGG	1 cut(s)	538
HhaI	GCGC	1 cut(s)	86
Hin1II	CATG	7 cut(s)	172, 176, 299, 406, 446, 587, 615
Hin6I	GCGC	1 cut(s)	84
HinP1I	GCGC	1 cut(s)	84
HincII	GTYRAC	2 cut(s)	25, 400
HindII	GTYRAC	2 cut(s)	25, 400
HindIII	AAGCTT	1 cut(s)	344
HinfI	GANTC	3 cut(s)	64, 431, 617
HpaII	CCGG	1 cut(s)	538
HphI	GGTGA	1 cut(s)	410
Hpy166II	GTNNAC	2 cut(s)	25, 400
Hpy188I	TCNGA	4 cut(s)	270, 472, 505, 691
Hpy188III	TCNNGA	3 cut(s)	139, 544, 595
Hpy8I	GTNNAC	2 cut(s)	25, 400
Hpy99I	CGWCG	1 cut(s)	26
HpyAV	CCTTC	2 cut(s)	39, 78
HpyCH4III	ACNGT	3 cut(s)	277, 313, 628
HpyCH4IV	ACGT	1 cut(s)	33
HpyCH4V	TGCA	4 cut(s)	101, 157, 172, 485
HpyF10VI	GCNNNNNNNGC	4 cut(s)	17, 107, 343, 388
HpySE526I	ACGT	1 cut(s)	33
Hsp92II	CATG	7 cut(s)	172, 176, 299, 406, 446, 587, 615
HspAI	GCGC	1 cut(s)	84
Kzo9I	GATC	1 cut(s)	487
LmnI	GCTCC	1 cut(s)	577
Lsp1109I	GCAGC	2 cut(s)	435, 469
LweI	GCATC	3 cut(s)	24, 476, 588
MaeII	ACGT	1 cut(s)	33
MaeIII	GTNAC	2 cut(s)	307, 647
MalI	GATC	1 cut(s)	489
MboI	GATC	1 cut(s)	487
MboII	GAAGA	4 cut(s)	200, 308, 562, 599
MfeI	CAATTG	1 cut(s)	524
MflI	RGATCY	1 cut(s)	487
MluCI	AATT	3 cut(s)	324, 524, 590
MlyI	GAGTC	1 cut(s)	73
MnlI	CCTC	4 cut(s)	47, 114, 267, 426
Mph1103I	ATGCAT	1 cut(s)	174
MroXI	GAANNNNTTC	1 cut(s)	345
MseI	TTAA	3 cut(s)	201, 378, 516
MspI	CCGG	1 cut(s)	538
MspR9I	CCNGG	1 cut(s)	321
MunI	CAATTG	1 cut(s)	524
MvaI	CCWGG	1 cut(s)	321
MwoI	GCNNNNNNNGC	4 cut(s)	17, 107, 343, 388
NdeII	GATC	1 cut(s)	487
NlaIII	CATG	7 cut(s)	172, 176, 299, 406, 446, 587, 615
NlaIV	GGNNCC	1 cut(s)	573
NmuCI	GTSAC	1 cut(s)	647
NsiI	ATGCAT	1 cut(s)	174
NspI	RCATGY	3 cut(s)	172, 176, 446
PaeI	GCATGC	1 cut(s)	172
PciI	ACATGT	1 cut(s)	442
PcsI	WCGNNNNNNNCGW	1 cut(s)	30
PdmI	GAANNNNTTC	1 cut(s)	345
PfeI	GAWTC	2 cut(s)	431, 617
PfoI	TCCNGGA	1 cut(s)	319
PinAI	ACCGGT	1 cut(s)	537
PkrI	GCNGC	2 cut(s)	425, 484
PleI	GAGTC	1 cut(s)	72
PpsI	GAGTC	1 cut(s)	72
PscI	ACATGT	1 cut(s)	442
Psp6I	CCWGG	1 cut(s)	319
PspFI	CCCAGC	1 cut(s)	329
PspGI	CCWGG	1 cut(s)	319
PspN4I	GGNNCC	1 cut(s)	573
PspPI	GGNCC	2 cut(s)	529, 655
PstI	CTGCAG	1 cut(s)	487
PsuI	RGATCY	1 cut(s)	487
SalI	GTCGAC	1 cut(s)	23
SaqAI	TTAA	3 cut(s)	201, 378, 516
SatI	GCNGC	2 cut(s)	424, 483
Sau3AI	GATC	1 cut(s)	487
Sau96I	GGNCC	2 cut(s)	529, 655
SchI	GAGTC	1 cut(s)	73
ScrFI	CCNGG	1 cut(s)	321
SetI	ASST	7 cut(s)	13, 36, 189, 218, 348, 484, 678
SfaNI	GCATC	3 cut(s)	24, 476, 588
SfcI	CTRYAG	1 cut(s)	483
SinI	GGWCC	1 cut(s)	655
SphI	GCATGC	1 cut(s)	172
Sse9I	AATT	3 cut(s)	324, 524, 590
SsiI	CCGC	3 cut(s)	40, 238, 421
StyD4I	CCNGG	1 cut(s)	319
StyI	CCWWGG	2 cut(s)	226, 676
TaaI	ACNGT	3 cut(s)	277, 313, 628
TaiI	ACGT	1 cut(s)	36
TaqI	TCGA	1 cut(s)	24
TaqII	GACCGA	1 cut(s)	672
TasI	AATT	3 cut(s)	324, 524, 590
TfiI	GAWTC	2 cut(s)	431, 617
Tru1I	TTAA	3 cut(s)	201, 378, 516
Tru9I	TTAA	3 cut(s)	201, 378, 516
TscAI	CASTG	1 cut(s)	573
TseFI	GTSAC	1 cut(s)	647
TseI	GCWGC	2 cut(s)	423, 482
Tsp45I	GTSAC	1 cut(s)	647
TspDTI	ATGAA	5 cut(s)	60, 238, 600, 600, 609
TspRI	CASTG	1 cut(s)	573
VpaK11BI	GGWCC	1 cut(s)	655
XapI	RAATTY	1 cut(s)	590
XceI	RCATGY	3 cut(s)	172, 176, 446
XmiI	GTMKAC	1 cut(s)	24
XmnI	GAANNNNTTC	1 cut(s)	345
Zsp2I	ATGCAT	1 cut(s)	174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.