Rorug05G0105600

C2 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000936
Physical Location & Seq
Forward (+)
9296095 .. 9296460
366 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0105600.1

Sequence Viewer

Length: 366 bp
ATGTCTACCGAGAGACACTACTTTCTTAGTGAGGCGCGGCAGGAAAAGACAATTGATTTCTTCAATGAAACCCGAAGTGGAATGGTTCTGATCAGATTGCAGCTCTACAAGCTTACCGGGAGTGGTTGGATGGATGGAGACGCCTATGACGACGTTCCAGTCGCAAGAGATGTTACTTATGAAGAATCTCCCATCTGGACAGAGTCTCACTTTTGGATCAGACTCTCATCTCTCAAGCACTTGCCGAAAAGGAAGAAGCACACTAAGCTTTTTACAGAGGTTCTAGAGGATTGGAGTGTGCCAAAACCTCAGCAGCCAGCTATTATTGCTGTTGATGTCATAATTTGGTTCGACAAATACTTTTGA

Protein Analysis

121

Amino Acids

14.4

Weight (kDa)

6.07

Isoelectric Point (pI)

58.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 158
AccI GTMKAC 1 cut(s) 5
AccII CGCG 1 cut(s) 37
AciI CCGC 1 cut(s) 37
AclWI GGATC 1 cut(s) 224
AcyI GRCGYC 1 cut(s) 141
AgsI TTSAA 1 cut(s) 64
AluBI AGCT 4 cut(s) 103, 112, 268, 320
AluI AGCT 4 cut(s) 103, 112, 268, 320
Alw26I GTCTC 3 cut(s) 7, 132, 210
AlwI GGATC 1 cut(s) 224
ApeKI GCWGC 2 cut(s) 100, 313
AspLEI GCGC 1 cut(s) 37
AsuC2I CCSGG 1 cut(s) 118
BbvCI CCTCAGC 1 cut(s) 309
BbvI GCAGC 2 cut(s) 112, 325
BccI CCATC 3 cut(s) 124, 128, 200
BclI TGATCA 1 cut(s) 90
BcnI CCSGG 1 cut(s) 118
BcoDI GTCTC 3 cut(s) 7, 132, 210
BfaI CTAG 1 cut(s) 284
BisI GCNGC 3 cut(s) 38, 101, 314
BlsI GCNGC 3 cut(s) 39, 102, 315
Bme1390I CCNGG 1 cut(s) 118
BmrFI CCNGG 1 cut(s) 118
Bpu10I CCTNAGC 1 cut(s) 309
BpuEI CTTGAG 1 cut(s) 218
BpuMI CCSGG 1 cut(s) 118
BsaHI GRCGYC 1 cut(s) 141
Bse1I ACTGG 1 cut(s) 158
BseGI GGATG 2 cut(s) 135, 139
BseMII CTCAG 1 cut(s) 323
BseNI ACTGG 1 cut(s) 158
BseXI GCAGC 2 cut(s) 112, 325
Bsh1236I CGCG 1 cut(s) 37
BsiSI CCGG 1 cut(s) 117
BsmAI GTCTC 3 cut(s) 7, 132, 210
BsmBI CGTCTC 1 cut(s) 132
Bsp143I GATC 2 cut(s) 90, 216
BspACI CCGC 1 cut(s) 37
BspCNI CTCAG 1 cut(s) 322
BspFNI CGCG 1 cut(s) 37
BspPI GGATC 1 cut(s) 224
BsrI ACTGG 1 cut(s) 158
BssMI GATC 2 cut(s) 90, 216
BssNI GRCGYC 1 cut(s) 141
BstACI GRCGYC 1 cut(s) 141
BstC8I GCNNGC 1 cut(s) 318
BstDEI CTNAG 3 cut(s) 26, 264, 309
BstF5I GGATG 2 cut(s) 135, 139
BstFNI CGCG 1 cut(s) 37
BstHHI GCGC 1 cut(s) 37
BstKTI GATC 2 cut(s) 93, 219
BstMAI GTCTC 3 cut(s) 7, 132, 210
BstMBI GATC 2 cut(s) 90, 216
BstMWI GCNNNNNNNGC 3 cut(s) 109, 265, 326
BstSCI CCNGG 1 cut(s) 116
BstUI CGCG 1 cut(s) 37
BstV1I GCAGC 2 cut(s) 112, 325
BtsCI GGATG 2 cut(s) 135, 139
Cac8I GCNNGC 1 cut(s) 318
CfoI GCGC 1 cut(s) 37
CseI GACGC 1 cut(s) 149
CviJI RGCY 5 cut(s) 103, 112, 268, 316, 320
CviKI_1 RGCY 5 cut(s) 103, 112, 268, 316, 320
DdeI CTNAG 3 cut(s) 26, 264, 309
DpnI GATC 2 cut(s) 92, 218
DpnII GATC 2 cut(s) 90, 216
DrdI GACNNNNNNGTC 1 cut(s) 158
DseDI GACNNNNNNGTC 1 cut(s) 158
Esp3I CGTCTC 1 cut(s) 132
FaiI YATR 3 cut(s) 147, 180, 341
FbaI TGATCA 1 cut(s) 90
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 3 cut(s) 38, 101, 314
FokI GGATG 2 cut(s) 142, 146
Fsp4HI GCNGC 3 cut(s) 38, 101, 314
FspBI CTAG 1 cut(s) 284
GlaI GCGC 1 cut(s) 36
GluI GCNGC 3 cut(s) 38, 101, 314
HapII CCGG 1 cut(s) 117
HgaI GACGC 1 cut(s) 149
HhaI GCGC 1 cut(s) 37
Hin1I GRCGYC 1 cut(s) 141
Hin6I GCGC 1 cut(s) 35
HinP1I GCGC 1 cut(s) 35
HindIII AAGCTT 2 cut(s) 110, 266
HinfI GANTC 3 cut(s) 185, 203, 222
HpaII CCGG 1 cut(s) 117
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 3 cut(s) 90, 95, 221
Hpy188III TCNNGA 2 cut(s) 196, 284
Hpy8I GTNNAC 1 cut(s) 6
Hpy99I CGWCG 1 cut(s) 155
HpyCH4IV ACGT 1 cut(s) 153
HpyCH4V TGCA 1 cut(s) 100
HpyF10VI GCNNNNNNNGC 3 cut(s) 109, 265, 326
HpyF3I CTNAG 3 cut(s) 26, 264, 309
HpySE526I ACGT 1 cut(s) 153
Hsp92I GRCGYC 1 cut(s) 141
HspAI GCGC 1 cut(s) 35
Ksp22I TGATCA 1 cut(s) 90
Kzo9I GATC 2 cut(s) 90, 216
LpnPI CCDG 5 cut(s) 26, 130, 171, 181, 330
Lsp1109I GCAGC 2 cut(s) 112, 325
MaeI CTAG 1 cut(s) 284
MaeII ACGT 1 cut(s) 153
MaeIII GTNAC 1 cut(s) 172
MalI GATC 2 cut(s) 92, 218
MboI GATC 2 cut(s) 90, 216
MboII GAAGA 3 cut(s) 52, 194, 265
MfeI CAATTG 1 cut(s) 51
MluCI AATT 2 cut(s) 51, 342
MlyI GAGTC 2 cut(s) 212, 216
MmeI TCCRAC 1 cut(s) 107
MnlI CCTC 4 cut(s) 25, 271, 280, 318
MspI CCGG 1 cut(s) 117
MspR9I CCNGG 1 cut(s) 118
MunI CAATTG 1 cut(s) 51
MvnI CGCG 1 cut(s) 37
MwoI GCNNNNNNNGC 3 cut(s) 109, 265, 326
NciI CCSGG 1 cut(s) 118
NdeII GATC 2 cut(s) 90, 216
PcsI WCGNNNNNNNCGW 1 cut(s) 147
PfeI GAWTC 1 cut(s) 185
PflFI GACNNNGTC 1 cut(s) 202
PkrI GCNGC 3 cut(s) 39, 102, 315
PleI GAGTC 2 cut(s) 211, 216
PpsI GAGTC 2 cut(s) 211, 216
PsyI GACNNNGTC 1 cut(s) 202
SatI GCNGC 3 cut(s) 38, 101, 314
Sau3AI GATC 2 cut(s) 90, 216
SchI GAGTC 2 cut(s) 212, 216
ScrFI CCNGG 1 cut(s) 118
SetI ASST 7 cut(s) 105, 114, 156, 270, 282, 310, 322
SmlI CTYRAG 1 cut(s) 233
SmoI CTYRAG 1 cut(s) 233
Sse9I AATT 2 cut(s) 51, 342
SsiI CCGC 1 cut(s) 37
SspMI CTAG 1 cut(s) 284
StyD4I CCNGG 1 cut(s) 116
TaiI ACGT 1 cut(s) 156
TaqI TCGA 1 cut(s) 351
TasI AATT 2 cut(s) 51, 342
TauI GCSGC 1 cut(s) 40
TfiI GAWTC 1 cut(s) 185
TseI GCWGC 2 cut(s) 100, 313
TspDTI ATGAA 2 cut(s) 81, 195
Tth111I GACNNNGTC 1 cut(s) 202
XbaI TCTAGA 1 cut(s) 283
XmiI GTMKAC 1 cut(s) 5
XspI CTAG 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.