Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000936

Physical Location & Seq

Genomic Coordinates Reverse (-)

34337631 .. 34339118

Gene Structure 1488 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ31819

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGCAGGTTTTGGAGTTGGGACTGAATTTTCTGACAGCTGATGATATGATTGCAATACTCGCTGTGAAGTTGAGGAAAAGACTGGGTTTCGGGATGTGGGCAAAGTTGCATATTACAGGCATGCATGTTGAAGGGAAGCTGTTGATTGGGGTTAAGTTTCTTCGTAGGTGGCCTTTCCTTGGCCGTCTGCGGATATGCTTCATTGAGCCTCCATATTTTCAGATGACTGTCAAGCCTATTTTTACACATGGCCTTGATGTTACAGTTCTTCCAGGAATTGCTGGGTGGCTGGAAAAGCTTCTTTCCATTGCCTTTGAGCAGACCCTTGTTGAGCCAAATATGCTGGTTGTTGACATGGAGAAATTCGCCTCACCGCAGCAAGGTAACAGGAGAAATATATTTCTGAATGCCTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005886 GO:0012505 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00290 ko00650 ko00660 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00290 map00650 map00660 map00770 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

C2 SMP_LBD

Protein Analysis

138

Amino Acids

15.81

Weight (kDa)

9.66

Isoelectric Point (pI)

48.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SMP_MUG190-like	PF25669	43 - 122	4.4e-09	MUG190-like SMP domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000936)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53590 AT3G14590 AT3G14590 AT3G14590 AT3G14590 AT3G14590
fragaria_vesca	FvH4_3g16980 FvH4_3g16980 FvH4_3g16980 FvH4_3g16980 FvH4_3g16980 FvH4_3g17020 FvH4_3g17020 FvH4_3g17020 FvH4_3g17020 FvH4_3g17020 FvH4_3g17020
malus_domestica	MD00G1185500.v1.1 MD00G1185600.v1.1 MD03G1254200.v1.1 MD03G1254900.v1.1 MD11G1275800.v1.1 MD11G1276000.v1.1
prunus_persica	Prupe.4G152200_v2.0.a1 Prupe.4G152200_v2.0.a1 Prupe.4G152300_v2.0.a1 Prupe.4G152300_v2.0.a1 Prupe.4G152300_v2.0.a1 Prupe.4G152300_v2.0.a1 Prupe.4G152300_v2.0.a1 Prupe.4G152300_v2.0.a1 Prupe.4G152300_v2.0.a1
pyrus_communis	pycom03g20170 pycom03g20190 pycom11g24400
rosa_chinensis	RchiOBHm_Chr2g0135571 RchiOBHm_Chr2g0159501 RchiOBHm_Chr2g0159511 RchiOBHm_Chr5g0028301 RchiOBHm_Chr5g0028351 RchiOBHm_Chr5g0039631
rosa_laevigata	RLG00000033080 RLG00000033088
rosa_multiflora	Rmu_sc0001020.1_g000001 Rmu_sc0002481.1_g000040 Rmu_sc0008526.1_g000010
rosa_roxburghii	Rroxscaffold_1G00051350 Rroxscaffold_1G00051420 Rroxscaffold_1G00051430
rosa_rugosa	Rorug05G0105600
rosa_samantha	Rh1AG292900 Rh4AG059100 Rh5AG199100 Rh5AG199600 Rh5BG197700 Rh5BG198100 Rh5CG217400 Rh5CG218100 Rh5DG199400 Rh5DG200000 Rh7DG370100
rosa_wichuraiana	Rw4G016870 Rw5G018160 Rw5G018190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	190, 374
AcoI	YGGCCR	1 cut(s)	181
AcsI	RAATTY	2 cut(s)	25, 362
AfiI	CCNNNNNNNGG	2 cut(s)	179, 380
AgsI	TTSAA	1 cut(s)	131
AjnI	CCWGG	1 cut(s)	271
AluBI	AGCT	3 cut(s)	38, 139, 298
AluI	AGCT	3 cut(s)	38, 139, 298
AoxI	GGCC	3 cut(s)	170, 181, 250
ApeKI	GCWGC	1 cut(s)	376
ApoI	RAATTY	2 cut(s)	25, 362
Asp700I	GAANNNNTTC	1 cut(s)	297
AsuHPI	GGTGA	1 cut(s)	363
BbvI	GCAGC	1 cut(s)	388
BceAI	ACGGC	1 cut(s)	168
BciT130I	CCWGG	1 cut(s)	273
BisI	GCNGC	1 cut(s)	377
BlsI	GCNGC	1 cut(s)	378
Bme1390I	CCNGG	1 cut(s)	273
BmrFI	CCNGG	1 cut(s)	273
BmrI	ACTGGG	1 cut(s)	92
BmuI	ACTGGG	1 cut(s)	92
BsaJI	CCNNGG	1 cut(s)	178
Bsc4I	CCNNNNNNNGG	2 cut(s)	179, 380
Bse1I	ACTGG	1 cut(s)	87
Bse3DI	GCAATG	1 cut(s)	306
BseBI	CCWGG	1 cut(s)	273
BseDI	CCNNGG	1 cut(s)	178
BseGI	GGATG	1 cut(s)	99
BseLI	CCNNNNNNNGG	2 cut(s)	179, 380
BseMI	GCAATG	1 cut(s)	306
BseNI	ACTGG	1 cut(s)	87
BseXI	GCAGC	1 cut(s)	388
BseYI	CCCAGC	1 cut(s)	281
BshFI	GGCC	3 cut(s)	172, 183, 252
BslFI	GGGAC	1 cut(s)	33
BslI	CCNNNNNNNGG	2 cut(s)	179, 380
BsmFI	GGGAC	1 cut(s)	33
BsmI	GAATGC	1 cut(s)	412
BsnI	GGCC	3 cut(s)	172, 183, 252
BspACI	CCGC	2 cut(s)	190, 374
BspANI	GGCC	3 cut(s)	172, 183, 252
BsrDI	GCAATG	1 cut(s)	306
BsrI	ACTGG	1 cut(s)	87
BssECI	CCNNGG	1 cut(s)	178
BssT1I	CCWWGG	1 cut(s)	178
Bst2UI	CCWGG	1 cut(s)	273
Bst4CI	ACNGT	2 cut(s)	229, 265
BstC8I	GCNNGC	1 cut(s)	122
BstF5I	GGATG	1 cut(s)	99
BstMWI	GCNNNNNNNGC	3 cut(s)	59, 295, 340
BstNI	CCWGG	1 cut(s)	273
BstNSI	RCATGY	2 cut(s)	124, 128
BstSCI	CCNGG	1 cut(s)	271
BstV1I	GCAGC	1 cut(s)	388
BsuRI	GGCC	3 cut(s)	172, 183, 252
BtsCI	GGATG	1 cut(s)	99
Cac8I	GCNNGC	1 cut(s)	122
CviAII	CATG	4 cut(s)	121, 125, 248, 355
EaeI	YGGCCR	1 cut(s)	181
Eco130I	CCWWGG	1 cut(s)	178
EcoRII	CCWGG	1 cut(s)	271
EcoT14I	CCWWGG	1 cut(s)	178
EcoT22I	ATGCAT	1 cut(s)	126
ErhI	CCWWGG	1 cut(s)	178
FaeI	CATG	4 cut(s)	124, 128, 251, 358
FaqI	GGGAC	1 cut(s)	33
FatI	CATG	4 cut(s)	120, 124, 247, 354
Fnu4HI	GCNGC	1 cut(s)	377
FokI	GGATG	1 cut(s)	106
Fsp4HI	GCNGC	1 cut(s)	377
GluI	GCNGC	1 cut(s)	377
GsaI	CCCAGC	1 cut(s)	285
HaeIII	GGCC	3 cut(s)	172, 183, 252
Hin1II	CATG	4 cut(s)	124, 128, 251, 358
HincII	GTYRAC	1 cut(s)	352
HindII	GTYRAC	1 cut(s)	352
HindIII	AAGCTT	1 cut(s)	296
HphI	GGTGA	1 cut(s)	363
Hpy166II	GTNNAC	1 cut(s)	352
Hpy188I	TCNGA	3 cut(s)	33, 222, 405
Hpy188III	TCNNGA	1 cut(s)	91
Hpy8I	GTNNAC	1 cut(s)	352
HpyAV	CCTTC	1 cut(s)	125
HpyCH4III	ACNGT	2 cut(s)	229, 265
HpyCH4V	TGCA	4 cut(s)	4, 53, 109, 124
HpyF10VI	GCNNNNNNNGC	3 cut(s)	59, 295, 340
Hsp92II	CATG	4 cut(s)	124, 128, 251, 358
LpnPI	CCDG	8 cut(s)	68, 102, 258, 267, 275, 285, 329, 373
Lsp1109I	GCAGC	1 cut(s)	388
MaeIII	GTNAC	2 cut(s)	259, 383
MboII	GAAGA	2 cut(s)	152, 260
MluCI	AATT	3 cut(s)	25, 276, 362
MnlI	CCTC	3 cut(s)	66, 219, 379
Mph1103I	ATGCAT	1 cut(s)	126
MroXI	GAANNNNTTC	1 cut(s)	297
MseI	TTAA	1 cut(s)	153
MspA1I	CMGCKG	1 cut(s)	38
MspR9I	CCNGG	1 cut(s)	273
Mva1269I	GAATGC	1 cut(s)	412
MvaI	CCWGG	1 cut(s)	273
MwoI	GCNNNNNNNGC	3 cut(s)	59, 295, 340
NlaIII	CATG	4 cut(s)	124, 128, 251, 358
NsiI	ATGCAT	1 cut(s)	126
NspI	RCATGY	2 cut(s)	124, 128
PaeI	GCATGC	1 cut(s)	124
PctI	GAATGC	1 cut(s)	412
PdmI	GAANNNNTTC	1 cut(s)	297
PfoI	TCCNGGA	1 cut(s)	271
PkrI	GCNGC	1 cut(s)	378
Psp6I	CCWGG	1 cut(s)	271
PspFI	CCCAGC	1 cut(s)	281
PspGI	CCWGG	1 cut(s)	271
PvuII	CAGCTG	1 cut(s)	38
SaqAI	TTAA	1 cut(s)	153
SatI	GCNGC	1 cut(s)	377
ScrFI	CCNGG	1 cut(s)	273
SetI	ASST	6 cut(s)	9, 40, 141, 170, 300, 385
SphI	GCATGC	1 cut(s)	124
Sse9I	AATT	3 cut(s)	25, 276, 362
SsiI	CCGC	2 cut(s)	190, 374
StyD4I	CCNGG	1 cut(s)	271
StyI	CCWWGG	1 cut(s)	178
TaaI	ACNGT	2 cut(s)	229, 265
TasI	AATT	3 cut(s)	25, 276, 362
Tru1I	TTAA	1 cut(s)	153
Tru9I	TTAA	1 cut(s)	153
TseI	GCWGC	1 cut(s)	376
TspDTI	ATGAA	1 cut(s)	190
XapI	RAATTY	2 cut(s)	25, 362
XceI	RCATGY	2 cut(s)	124, 128
XmnI	GAANNNNTTC	1 cut(s)	297
Zsp2I	ATGCAT	1 cut(s)	126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.