Rw4G016870

C2 domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Reverse (-)
38268583 .. 38276589
8007 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G016870.1

Sequence Viewer

Length: 1203 bp
ATGATTGCTTTTTATGGCTTCTTGTACTCTTTCAGGTTTGCTGATTCTGCGGTTGAGTCTGGATCTAACAAATTCCAGTTTGGAAAGCTGCTGTTCTCTTCAATTTCTACAAGCTTCCCACAGGGCGGCCTCTCTTCCTCTTCAATGGCTCACCGGTGGTCATTGGTGACTCCATCAGACCCATGGTTACTGCATCCAAATCGTGATGTCGGTGTTCGACACCCCACCGGATGTGGATATCTCGGGGGGGGGGGGGGGGGGGGAGATATATATATATATATATATATGAGAGTGCACTATGCCAATAACCTCATCAGACGACAGAGCTCAGACGACAGACATGTTTTGGACTTGGGACTGAATTTTCTGACAGCTGATGATATGATTGCAATACTCGCTGTGAAGTTGAGGAAAAGACTGGGTTTCGGGATGTGGGCAAAGTTGCATATTACAGGCATGCATGTTGAAGGGAAGCTGTTGATTGGGGTTAAGTTTCTTCGTAGGTGGCCTTTCCTTGGCCGTCTGCGGATATGCTTCATTGAGCCTCCATATTTTCAGATGACCGTCAAGCCTATTTTTACACATGGCCTTGATGTTACAGTTCTTCCAGGAATTGCTGGGTGGCTCGAAAAGCTTCTTTCCATTGCCTTTGAGCAGACCCTTGTTGAGCCAAATATGCTGGTTGTTGACATGGAGAAATTCGCCTCACCGCAGCAAGAGAGTTGGTTCTCTGTGAATGAAAAGGAATCTCTAGGACATGTCAGAGTAGAAGTTATTGAAGCATCTGACATCAAAGCTGCAGATCTAAATGGATTATCTGACCCTTATGTTAAGGGTCAATTGGGCCTTTACTGGTTCAGGACGAAGACACAAAAGAAAACACTGGCTCCAAAATGGCATGAAGAATTCAAGATGCCCATTATTACATGGGATTCATGTACTTCAGTTTTTGTTTGCCGGTCTAACTTACCTTATTCTGTATCCAGATTCTGCTCCATTAACATTGGTGAGTATAGAGATGGCCAGAGGCATGACATGTGGTTGCCTCTTCAGAATATAAAAACAGGAAGGATCCATCTTGCAGTAACTGTGGTTGAAGATAATCCCAAGTCCTCACTTAGGAAGCAGAGATCTAGCAGGGCAGAAATGGTTAAGAAGCAGAGACGATACGTAGTATGCAGAAGGCAAGCAGAAAACAAATAG

Protein Analysis

400

Amino Acids

45.62

Weight (kDa)

9.58

Isoelectric Point (pI)

55.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SMP_MUG190-like PF25669 155 - 234 5e-08 MUG190-like SMP domain
C2 PF00168 252 - 311 3.4e-13 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 50, 126, 526, 710
AclWI GGATC 3 cut(s) 70, 1066, 1079
AcoI YGGCCR 2 cut(s) 517, 1021
AcsI RAATTY 4 cut(s) 71, 361, 698, 905
AcuI CTGAAG 2 cut(s) 927, 1034
AfaI GTAC 2 cut(s) 26, 940
AfiI CCNNNNNNNGG 3 cut(s) 125, 515, 1119
AflIII ACRYGT 3 cut(s) 340, 757, 1035
AgeI ACCGGT 1 cut(s) 153
AgsI TTSAA 6 cut(s) 102, 144, 467, 779, 910, 1097
AjnI CCWGG 1 cut(s) 607
AluBI AGCT 7 cut(s) 88, 114, 327, 374, 475, 634, 797
AluI AGCT 7 cut(s) 88, 114, 327, 374, 475, 634, 797
Alw21I GWGCWC 2 cut(s) 297, 329
Alw26I GTCTC 1 cut(s) 1156
Alw44I GTGCAC 1 cut(s) 293
AlwI GGATC 3 cut(s) 70, 1066, 1079
AlwNI CAGNNNCTG 2 cut(s) 990, 1088
Ama87I CYCGRG 1 cut(s) 242
AoxI GGCC 6 cut(s) 127, 506, 517, 586, 844, 1021
ApaLI GTGCAC 1 cut(s) 293
ApeKI GCWGC 3 cut(s) 88, 712, 797
ApoI RAATTY 4 cut(s) 71, 361, 698, 905
AsiGI ACCGGT 1 cut(s) 153
Asp700I GAANNNNTTC 1 cut(s) 633
AspS9I GGNCC 1 cut(s) 844
AsuHPI GGTGA 4 cut(s) 143, 178, 699, 1019
AvaI CYCGRG 1 cut(s) 242
BaeGI GKGCMC 1 cut(s) 297
BalI TGGCCA 1 cut(s) 1023
BamHI GGATCC 1 cut(s) 1071
BanII GRGCYC 1 cut(s) 329
BbsI GAAGAC 1 cut(s) 872
Bbv12I GWGCWC 2 cut(s) 297, 329
BbvI GCAGC 3 cut(s) 75, 724, 784
BccI CCATC 3 cut(s) 181, 1013, 1083
BceAI ACGGC 1 cut(s) 504
BcgI CGANNNNNNTGC 2 cut(s) 182, 216
BciT130I CCWGG 1 cut(s) 609
BciVI GTATCC 1 cut(s) 991
BcoDI GTCTC 1 cut(s) 1156
BfaI CTAG 2 cut(s) 752, 1134
BfmI CTRYAG 1 cut(s) 798
BfuI GTATCC 1 cut(s) 991
BglII AGATCT 2 cut(s) 802, 1130
BisI GCNGC 4 cut(s) 89, 127, 713, 798
BlsI GCNGC 4 cut(s) 90, 128, 714, 799
Bme1390I CCNGG 1 cut(s) 609
BmeT110I CYCGRG 1 cut(s) 242
BmgT120I GGNCC 1 cut(s) 844
BmiI GGNNCC 2 cut(s) 888, 1073
BmrFI CCNGG 1 cut(s) 609
BmrI ACTGGG 1 cut(s) 428
BmsI GCATC 3 cut(s) 202, 791, 903
BmuI ACTGGG 1 cut(s) 428
BpiI GAAGAC 1 cut(s) 872
BsaAI YACGTR 1 cut(s) 1171
BsaJI CCNNGG 2 cut(s) 182, 514
BsaWI WCCGGW 2 cut(s) 153, 227
BsaXI ACNNNNNCTCC 2 cut(s) 871, 901
Bsc4I CCNNNNNNNGG 3 cut(s) 125, 515, 1119
Bse118I RCCGGY 2 cut(s) 153, 957
Bse1I ACTGG 4 cut(s) 76, 423, 857, 888
Bse3DI GCAATG 1 cut(s) 642
BseBI CCWGG 1 cut(s) 609
BseDI CCNNGG 2 cut(s) 182, 514
BseGI GGATG 3 cut(s) 193, 236, 435
BseLI CCNNNNNNNGG 3 cut(s) 125, 515, 1119
BseMI GCAATG 1 cut(s) 642
BseMII CTCAG 1 cut(s) 342
BseNI ACTGG 4 cut(s) 76, 423, 857, 888
BseSI GKGCMC 1 cut(s) 297
BseXI GCAGC 3 cut(s) 75, 724, 784
BseYI CCCAGC 1 cut(s) 617
BshFI GGCC 6 cut(s) 129, 508, 519, 588, 846, 1023
BshTI ACCGGT 1 cut(s) 153
BsiHKAI GWGCWC 2 cut(s) 297, 329
BsiHKCI CYCGRG 1 cut(s) 242
BsiSI CCGG 3 cut(s) 154, 228, 958
BslFI GGGAC 1 cut(s) 369
BslI CCNNNNNNNGG 3 cut(s) 125, 515, 1119
BsmAI GTCTC 1 cut(s) 1156
BsmBI CGTCTC 1 cut(s) 1156
BsmFI GGGAC 1 cut(s) 369
BsnI GGCC 6 cut(s) 129, 508, 519, 588, 846, 1023
BsoBI CYCGRG 1 cut(s) 242
Bsp1286I GDGCHC 2 cut(s) 297, 329
Bsp143I GATC 4 cut(s) 62, 802, 1071, 1130
Bsp19I CCATGG 1 cut(s) 182
BspACI CCGC 4 cut(s) 50, 126, 526, 710
BspANI GGCC 6 cut(s) 129, 508, 519, 588, 846, 1023
BspCNI CTCAG 1 cut(s) 341
BspLI GGNNCC 2 cut(s) 888, 1073
BspMAI CTGCAG 1 cut(s) 802
BspPI GGATC 3 cut(s) 70, 1066, 1079
BsrDI GCAATG 1 cut(s) 642
BsrFI RCCGGY 2 cut(s) 153, 957
BsrI ACTGG 4 cut(s) 76, 423, 857, 888
BssAI RCCGGY 2 cut(s) 153, 957
BssECI CCNNGG 2 cut(s) 182, 514
BssMI GATC 4 cut(s) 62, 802, 1071, 1130
BssT1I CCWWGG 2 cut(s) 182, 514
Bst2UI CCWGG 1 cut(s) 609
Bst4CI ACNGT 3 cut(s) 565, 601, 1090
Bst6I CTCTTC 4 cut(s) 103, 139, 145, 1053
BstBAI YACGTR 1 cut(s) 1171
BstC8I GCNNGC 2 cut(s) 458, 1188
BstDEI CTNAG 2 cut(s) 328, 1118
BstDSI CCRYGG 1 cut(s) 182
BstENI CCTNNNNNAGG 1 cut(s) 1117
BstF5I GGATG 3 cut(s) 193, 236, 435
BstKTI GATC 4 cut(s) 65, 805, 1074, 1133
BstMAI GTCTC 1 cut(s) 1156
BstMBI GATC 4 cut(s) 62, 802, 1071, 1130
BstMWI GCNNNNNNNGC 4 cut(s) 47, 395, 631, 676
BstNI CCWGG 1 cut(s) 609
BstNSI RCATGY 5 cut(s) 344, 460, 464, 761, 1039
BstSCI CCNGG 1 cut(s) 607
BstSFI CTRYAG 1 cut(s) 798
BstSLI GKGCMC 1 cut(s) 297
BstSNI TACGTA 1 cut(s) 1171
BstV1I GCAGC 3 cut(s) 75, 724, 784
BstV2I GAAGAC 1 cut(s) 872
BstX2I RGATCY 4 cut(s) 62, 802, 1071, 1130
BstYI RGATCY 4 cut(s) 62, 802, 1071, 1130
BsuI GTATCC 1 cut(s) 991
BsuRI GGCC 6 cut(s) 129, 508, 519, 588, 846, 1023
BtgI CCRYGG 1 cut(s) 182
BtsCI GGATG 3 cut(s) 193, 236, 435
BtsIMutI CAGTG 1 cut(s) 881
Cac8I GCNNGC 2 cut(s) 458, 1188
CaiI CAGNNNCTG 2 cut(s) 990, 1088
Cfr10I RCCGGY 2 cut(s) 153, 957
Cfr13I GGNCC 1 cut(s) 844
Csp6I GTAC 2 cut(s) 25, 939
CspAI ACCGGT 1 cut(s) 153
CviQI GTAC 2 cut(s) 25, 939
DdeI CTNAG 2 cut(s) 328, 1118
DpnI GATC 4 cut(s) 64, 804, 1073, 1132
DpnII GATC 4 cut(s) 62, 802, 1071, 1130
EaeI YGGCCR 2 cut(s) 517, 1021
Eam1104I CTCTTC 4 cut(s) 103, 139, 145, 1053
EarI CTCTTC 4 cut(s) 103, 139, 145, 1053
Ecl136II GAGCTC 1 cut(s) 327
Eco105I TACGTA 1 cut(s) 1171
Eco130I CCWWGG 2 cut(s) 182, 514
Eco24I GRGCYC 1 cut(s) 329
Eco32I GATATC 1 cut(s) 239
Eco53kI GAGCTC 1 cut(s) 327
Eco57I CTGAAG 2 cut(s) 927, 1034
Eco88I CYCGRG 1 cut(s) 242
EcoICRI GAGCTC 1 cut(s) 327
EcoNI CCTNNNNNAGG 1 cut(s) 1117
EcoRI GAATTC 1 cut(s) 905
EcoRII CCWGG 1 cut(s) 607
EcoRV GATATC 1 cut(s) 239
EcoT14I CCWWGG 2 cut(s) 182, 514
EcoT22I ATGCAT 1 cut(s) 462
EcoT38I GRGCYC 1 cut(s) 329
ErhI CCWWGG 2 cut(s) 182, 514
Esp3I CGTCTC 1 cut(s) 1156
FaqI GGGAC 1 cut(s) 369
Fnu4HI GCNGC 4 cut(s) 89, 127, 713, 798
FokI GGATG 3 cut(s) 180, 243, 442
FriOI GRGCYC 1 cut(s) 329
Fsp4HI GCNGC 4 cut(s) 89, 127, 713, 798
FspBI CTAG 2 cut(s) 752, 1134
GluI GCNGC 4 cut(s) 89, 127, 713, 798
GsaI CCCAGC 1 cut(s) 621
HaeIII GGCC 6 cut(s) 129, 508, 519, 588, 846, 1023
HapII CCGG 3 cut(s) 154, 228, 958
HincII GTYRAC 1 cut(s) 688
HindII GTYRAC 1 cut(s) 688
HindIII AAGCTT 2 cut(s) 112, 632
HinfI GANTC 6 cut(s) 44, 56, 169, 746, 932, 987
HpaII CCGG 3 cut(s) 154, 228, 958
HphI GGTGA 4 cut(s) 143, 178, 699, 1019
Hpy166II GTNNAC 2 cut(s) 295, 688
Hpy188I TCNGA 9 cut(s) 178, 317, 331, 369, 558, 764, 787, 820, 1053
Hpy188III TCNNGA 6 cut(s) 60, 203, 427, 859, 910, 984
Hpy8I GTNNAC 2 cut(s) 295, 688
HpyAV CCTTC 3 cut(s) 461, 1062, 1176
HpyCH4III ACNGT 3 cut(s) 565, 601, 1090
HpyCH4IV ACGT 1 cut(s) 1170
HpyCH4V TGCA 8 cut(s) 193, 295, 389, 445, 460, 800, 1082, 1179
HpyF10VI GCNNNNNNNGC 4 cut(s) 47, 395, 631, 676
HpyF3I CTNAG 2 cut(s) 328, 1118
HpySE526I ACGT 1 cut(s) 1170
Kzo9I GATC 4 cut(s) 62, 802, 1071, 1130
LmnI GCTCC 2 cut(s) 892, 998
Lsp1109I GCAGC 3 cut(s) 75, 724, 784
LweI GCATC 3 cut(s) 202, 791, 903
MaeI CTAG 2 cut(s) 752, 1134
MaeII ACGT 1 cut(s) 1170
MaeIII GTNAC 4 cut(s) 166, 186, 595, 1084
MalI GATC 4 cut(s) 64, 804, 1073, 1132
MboI GATC 4 cut(s) 62, 802, 1071, 1130
MboII GAAGA 9 cut(s) 90, 126, 132, 488, 596, 877, 914, 1040, 1109
MfeI CAATTG 1 cut(s) 839
MflI RGATCY 4 cut(s) 62, 802, 1071, 1130
MhlI GDGCHC 2 cut(s) 297, 329
MlsI TGGCCA 1 cut(s) 1023
MluCI AATT 7 cut(s) 71, 102, 361, 612, 698, 839, 905
MluNI TGGCCA 1 cut(s) 1023
MlyI GAGTC 2 cut(s) 65, 163
MnlI CCTC 9 cut(s) 140, 148, 320, 402, 555, 715, 1020, 1056, 1123
Mox20I TGGCCA 1 cut(s) 1023
Mph1103I ATGCAT 1 cut(s) 462
MroXI GAANNNNTTC 1 cut(s) 633
MscI TGGCCA 1 cut(s) 1023
MseI TTAA 4 cut(s) 489, 831, 999, 1152
Msp20I TGGCCA 1 cut(s) 1023
MspA1I CMGCKG 1 cut(s) 374
MspI CCGG 3 cut(s) 154, 228, 958
MspR9I CCNGG 1 cut(s) 609
MunI CAATTG 1 cut(s) 839
MvaI CCWGG 1 cut(s) 609
MwoI GCNNNNNNNGC 4 cut(s) 47, 395, 631, 676
NcoI CCATGG 1 cut(s) 182
NdeII GATC 4 cut(s) 62, 802, 1071, 1130
NlaIV GGNNCC 2 cut(s) 888, 1073
NmuCI GTSAC 1 cut(s) 166
NsiI ATGCAT 1 cut(s) 462
NspI RCATGY 5 cut(s) 344, 460, 464, 761, 1039
PaeI GCATGC 1 cut(s) 460
PciI ACATGT 3 cut(s) 340, 757, 1035
PdmI GAANNNNTTC 1 cut(s) 633
PfeI GAWTC 4 cut(s) 44, 746, 932, 987
PfoI TCCNGGA 1 cut(s) 607
PinAI ACCGGT 1 cut(s) 153
PkrI GCNGC 4 cut(s) 90, 128, 714, 799
PleI GAGTC 2 cut(s) 64, 163
PpsI GAGTC 2 cut(s) 64, 163
Ppu21I YACGTR 1 cut(s) 1171
PscI ACATGT 3 cut(s) 340, 757, 1035
Psp124BI GAGCTC 1 cut(s) 329
Psp6I CCWGG 1 cut(s) 607
PspFI CCCAGC 1 cut(s) 617
PspGI CCWGG 1 cut(s) 607
PspN4I GGNNCC 2 cut(s) 888, 1073
PspPI GGNCC 1 cut(s) 844
PstI CTGCAG 1 cut(s) 802
PstNI CAGNNNCTG 2 cut(s) 990, 1088
PsuI RGATCY 4 cut(s) 62, 802, 1071, 1130
PvuII CAGCTG 1 cut(s) 374
RsaI GTAC 2 cut(s) 26, 940
RsaNI GTAC 2 cut(s) 25, 939
SacI GAGCTC 1 cut(s) 329
SaqAI TTAA 4 cut(s) 489, 831, 999, 1152
SatI GCNGC 4 cut(s) 89, 127, 713, 798
Sau3AI GATC 4 cut(s) 62, 802, 1071, 1130
Sau96I GGNCC 1 cut(s) 844
SchI GAGTC 2 cut(s) 65, 163
ScrFI CCNGG 1 cut(s) 609
SduI GDGCHC 2 cut(s) 297, 329
SfaNI GCATC 3 cut(s) 202, 791, 903
SfcI CTRYAG 1 cut(s) 798
SgrAI CRCCGGYG 1 cut(s) 153
SnaBI TACGTA 1 cut(s) 1171
SphI GCATGC 1 cut(s) 460
Sse9I AATT 7 cut(s) 71, 102, 361, 612, 698, 839, 905
SsiI CCGC 4 cut(s) 50, 126, 526, 710
SspMI CTAG 2 cut(s) 752, 1134
SstI GAGCTC 1 cut(s) 329
StyD4I CCNGG 1 cut(s) 607
StyI CCWWGG 2 cut(s) 182, 514
TaaI ACNGT 3 cut(s) 565, 601, 1090
TaiI ACGT 1 cut(s) 1173
TaqI TCGA 2 cut(s) 217, 627
TasI AATT 7 cut(s) 71, 102, 361, 612, 698, 839, 905
TatI WGTACW 2 cut(s) 24, 938
TauI GCSGC 1 cut(s) 129
TfiI GAWTC 4 cut(s) 44, 746, 932, 987
Tru1I TTAA 4 cut(s) 489, 831, 999, 1152
Tru9I TTAA 4 cut(s) 489, 831, 999, 1152
TscAI CASTG 1 cut(s) 888
TseFI GTSAC 1 cut(s) 166
TseI GCWGC 3 cut(s) 88, 712, 797
Tsp45I GTSAC 1 cut(s) 166
TspDTI ATGAA 4 cut(s) 526, 753, 915, 924
TspRI CASTG 1 cut(s) 888
VneI GTGCAC 1 cut(s) 293
XagI CCTNNNNNAGG 1 cut(s) 1117
XapI RAATTY 4 cut(s) 71, 361, 698, 905
XceI RCATGY 5 cut(s) 344, 460, 464, 761, 1039
XcmI CCANNNNNNNNNTGG 1 cut(s) 180
XmnI GAANNNNTTC 1 cut(s) 633
XspI CTAG 2 cut(s) 752, 1134
Zsp2I ATGCAT 1 cut(s) 462
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.