Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0000936

Physical Location & Seq

Genomic Coordinates Reverse (-)

44145255 .. 44148419

Gene Structure 3165 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1185600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGGATGTAACAGAAGTTACAGTGATACACCACGTGGGGATTGTGTTAATGGTGATCTGGTTTCTCTCTCACTTCAATTGCTGCCACCCAGTTGCCTACTTCATCTCTCTCATTTATCTCTACCTGGTTCATGAGCGGTATGTTATGAGATTGCGGAAGAAATTACAATTTGAGGAAAGAAAACAGGCTAATCAGAGAAGGGTACTTTCTGATTCTGAGACCGTGCGGTGGTTGAACCATGCAGTTGAAAAGATATGGCCTATATGTATGGAACAGATTGCTTCACAGAAAGTTCTCCTCCCTATCATACCTTGGTTTTTTGGAGAAGTACAAACCGTGGACTGTTGTATGACTTTATCTTCTGATTTATTCATGTTCGATACTCTAGGTAAAGCTATAGTACAGCATCTTTACTTGGGAAGAAACCCACCTATGTTCACAGAGATGAGAGTTCTTCGCCAATCTACTGATGATGACCACTTGGTTCTGGAGTTGGGGATGAATTTTCTGACAGCTGATGATATGCTTGGAATTCTAGCTGTGAAACTGAGGAAAAGACTAGGTTTTGGAATCTGGGCAAAGTTGCATATTACAGGCATGCATGTTGAAGGGAAGGTCCTGATTGGGGTGAGGTTCCTTTGCAAGTGGCCTTTCCTAGGCCGTGTGCGGTTATGCTTCGTTGAGCCTCCATATTTTCAAATGACCGTCAAGCCTATTTTCACTCATGGGCTTAACGTTACAGAAGTCCCTGGGATTGATGGCTGGCTGGATAAGCTTCTCTCTGTTGCCTTCGAGCAGACACTTGTTCAGCCTAATATGCTGGTCGTTGACATGGAGAAATTTACTTCACCGGAACAGGAAAGCTGGTTCTCTGTGGATGAGAAGGATCCTGTTGCTTATGTGAGAGTAGAAGTTATCAAAGCATCTGACATCAAAGCCTCTGATCTAAATGGATTCGCTGACCCTTATGTGAAGGGTCATTTGGGTGTTTACCAATTCAAAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005886 GO:0012505 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00290 ko00650 ko00660 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00290 map00650 map00660 map00770 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

C2 SMP_LBD

Protein Analysis

336

Amino Acids

38.78

Weight (kDa)

6.64

Isoelectric Point (pI)

29.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SMP_MUG190-like	PF25669	190 - 281	3.9e-10	MUG190-like SMP domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000936)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53590 AT3G14590 AT3G14590 AT3G14590 AT3G14590 AT3G14590
fragaria_vesca	FvH4_3g16980 FvH4_3g16980 FvH4_3g16980 FvH4_3g16980 FvH4_3g16980 FvH4_3g17020 FvH4_3g17020 FvH4_3g17020 FvH4_3g17020 FvH4_3g17020 FvH4_3g17020
malus_domestica	MD00G1185500.v1.1 MD00G1185600.v1.1 MD03G1254200.v1.1 MD03G1254900.v1.1 MD11G1275800.v1.1 MD11G1276000.v1.1
prunus_persica	Prupe.4G152200_v2.0.a1 Prupe.4G152200_v2.0.a1 Prupe.4G152300_v2.0.a1 Prupe.4G152300_v2.0.a1 Prupe.4G152300_v2.0.a1 Prupe.4G152300_v2.0.a1 Prupe.4G152300_v2.0.a1 Prupe.4G152300_v2.0.a1 Prupe.4G152300_v2.0.a1
pyrus_communis	pycom03g20170 pycom03g20190 pycom11g24400
rosa_chinensis	RchiOBHm_Chr2g0135571 RchiOBHm_Chr2g0159501 RchiOBHm_Chr2g0159511 RchiOBHm_Chr5g0028301 RchiOBHm_Chr5g0028351 RchiOBHm_Chr5g0039631
rosa_laevigata	RLG00000033080 RLG00000033088
rosa_multiflora	Rmu_sc0001020.1_g000001 Rmu_sc0002481.1_g000040 Rmu_sc0008526.1_g000010
rosa_roxburghii	Rroxscaffold_1G00051350 Rroxscaffold_1G00051420 Rroxscaffold_1G00051430
rosa_rugosa	Rorug05G0105600
rosa_samantha	Rh1AG292900 Rh4AG059100 Rh5AG199100 Rh5AG199600 Rh5BG197700 Rh5BG198100 Rh5CG217400 Rh5CG218100 Rh5DG199400 Rh5DG200000 Rh7DG370100
rosa_wichuraiana	Rw4G016870 Rw5G018160 Rw5G018190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	136
AciI	CCGC	4 cut(s)	136, 154, 226, 667
AclI	AACGTT	1 cut(s)	735
AclWI	GGATC	2 cut(s)	881, 894
AcsI	RAATTY	3 cut(s)	502, 531, 839
AcvI	CACGTG	1 cut(s)	34
AdeI	CACNNNGTG	1 cut(s)	34
AfaI	GTAC	3 cut(s)	204, 330, 402
AfiI	CCNNNNNNNGG	3 cut(s)	228, 625, 656
AgsI	TTSAA	6 cut(s)	76, 235, 248, 608, 698, 1000
AjnI	CCWGG	2 cut(s)	123, 748
AjuI	GAANNNNNNNTTGG	2 cut(s)	965, 997
AloI	GAACNNNNNNTCC	2 cut(s)	851, 883
AluBI	AGCT	5 cut(s)	395, 515, 539, 775, 864
AluI	AGCT	5 cut(s)	395, 515, 539, 775, 864
Alw26I	GTCTC	1 cut(s)	212
AlwI	GGATC	2 cut(s)	881, 894
AoxI	GGCC	3 cut(s)	257, 647, 658
ApeKI	GCWGC	1 cut(s)	81
ApoI	RAATTY	3 cut(s)	502, 531, 839
AspA2I	CCTAGG	1 cut(s)	655
AspS9I	GGNCC	1 cut(s)	616
AsuHPI	GGTGA	3 cut(s)	64, 640, 840
AvaII	GGWCC	1 cut(s)	616
AvrII	CCTAGG	1 cut(s)	655
BamHI	GGATCC	1 cut(s)	886
BbrPI	CACGTG	1 cut(s)	34
BbvI	GCAGC	1 cut(s)	68
BccI	CCATC	1 cut(s)	752
BceAI	ACGGC	1 cut(s)	645
BciT130I	CCWGG	2 cut(s)	125, 750
BcoDI	GTCTC	1 cut(s)	212
BfaI	CTAG	4 cut(s)	386, 536, 560, 656
BfmI	CTRYAG	1 cut(s)	396
BisI	GCNGC	1 cut(s)	82
BlnI	CCTAGG	1 cut(s)	655
BlsI	GCNGC	1 cut(s)	83
Bme1390I	CCNGG	2 cut(s)	125, 750
Bme18I	GGWCC	1 cut(s)	616
BmgT120I	GGNCC	1 cut(s)	616
BmiI	GGNNCC	2 cut(s)	635, 888
BmrFI	CCNGG	2 cut(s)	125, 750
BmrI	ACTGGG	1 cut(s)	83
BmsI	GCATC	2 cut(s)	415, 932
BmuI	ACTGGG	1 cut(s)	83
BpmI	CTGGAG	1 cut(s)	509
BsaAI	YACGTR	1 cut(s)	34
BsaI	GGTCTC	1 cut(s)	212
BsaJI	CCNNGG	5 cut(s)	311, 336, 655, 748, 749
BsaWI	WCCGGW	1 cut(s)	850
Bsc4I	CCNNNNNNNGG	3 cut(s)	228, 625, 656
Bse1I	ACTGG	1 cut(s)	89
BseBI	CCWGG	2 cut(s)	125, 750
BseDI	CCNNGG	5 cut(s)	311, 336, 655, 748, 749
BseGI	GGATG	3 cut(s)	10, 504, 883
BseLI	CCNNNNNNNGG	3 cut(s)	228, 625, 656
BseMII	CTCAG	2 cut(s)	207, 539
BseNI	ACTGG	1 cut(s)	89
BseRI	GAGGAG	1 cut(s)	287
BseXI	GCAGC	1 cut(s)	68
BshFI	GGCC	3 cut(s)	259, 649, 660
BsiSI	CCGG	1 cut(s)	851
BslFI	GGGAC	1 cut(s)	731
BslI	CCNNNNNNNGG	3 cut(s)	228, 625, 656
BsmAI	GTCTC	1 cut(s)	212
BsmFI	GGGAC	1 cut(s)	731
BsnI	GGCC	3 cut(s)	259, 649, 660
Bso31I	GGTCTC	1 cut(s)	212
Bsp143I	GATC	3 cut(s)	54, 886, 943
BspACI	CCGC	4 cut(s)	136, 154, 226, 667
BspANI	GGCC	3 cut(s)	259, 649, 660
BspCNI	CTCAG	2 cut(s)	208, 540
BspHI	TCATGA	1 cut(s)	130
BspLI	GGNNCC	2 cut(s)	635, 888
BspPI	GGATC	2 cut(s)	881, 894
BspTNI	GGTCTC	1 cut(s)	212
BsrBI	CCGCTC	1 cut(s)	136
BsrI	ACTGG	1 cut(s)	89
BssECI	CCNNGG	5 cut(s)	311, 336, 655, 748, 749
BssMI	GATC	3 cut(s)	54, 886, 943
BssT1I	CCWWGG	2 cut(s)	311, 655
Bst2UI	CCWGG	2 cut(s)	125, 750
Bst4CI	ACNGT	5 cut(s)	22, 223, 337, 344, 706
BstBAI	YACGTR	1 cut(s)	34
BstC8I	GCNNGC	2 cut(s)	599, 764
BstDEI	CTNAG	2 cut(s)	216, 548
BstDSI	CCRYGG	1 cut(s)	336
BstENI	CCTNNNNNAGG	1 cut(s)	654
BstF5I	GGATG	3 cut(s)	10, 504, 883
BstKTI	GATC	3 cut(s)	57, 889, 946
BstMAI	GTCTC	1 cut(s)	212
BstMBI	GATC	3 cut(s)	54, 886, 943
BstMWI	GCNNNNNNNGC	2 cut(s)	772, 817
BstNI	CCWGG	2 cut(s)	125, 750
BstNSI	RCATGY	2 cut(s)	601, 605
BstSCI	CCNGG	2 cut(s)	123, 748
BstSFI	CTRYAG	1 cut(s)	396
BstV1I	GCAGC	1 cut(s)	68
BstX2I	RGATCY	1 cut(s)	886
BstYI	RGATCY	1 cut(s)	886
BsuRI	GGCC	3 cut(s)	259, 649, 660
BtgI	CCRYGG	1 cut(s)	336
BtsCI	GGATG	3 cut(s)	10, 504, 883
BtsIMutI	CAGTG	1 cut(s)	27
Cac8I	GCNNGC	2 cut(s)	599, 764
CciI	TCATGA	1 cut(s)	130
Cfr13I	GGNCC	1 cut(s)	616
CsiI	ACCWGGT	1 cut(s)	123
Csp6I	GTAC	3 cut(s)	203, 329, 401
CviAII	CATG	7 cut(s)	131, 239, 373, 598, 602, 725, 832
CviQI	GTAC	3 cut(s)	203, 329, 401
DdeI	CTNAG	2 cut(s)	216, 548
DpnI	GATC	3 cut(s)	56, 888, 945
DpnII	GATC	3 cut(s)	54, 886, 943
DraIII	CACNNNGTG	1 cut(s)	34
Eco130I	CCWWGG	2 cut(s)	311, 655
Eco31I	GGTCTC	1 cut(s)	212
Eco47I	GGWCC	1 cut(s)	616
Eco72I	CACGTG	1 cut(s)	34
EcoNI	CCTNNNNNAGG	1 cut(s)	654
EcoO109I	RGGNCCY	1 cut(s)	616
EcoRI	GAATTC	1 cut(s)	531
EcoRII	CCWGG	2 cut(s)	123, 748
EcoT14I	CCWWGG	2 cut(s)	311, 655
EcoT22I	ATGCAT	1 cut(s)	603
ErhI	CCWWGG	2 cut(s)	311, 655
FaeI	CATG	7 cut(s)	134, 242, 376, 601, 605, 728, 835
FaqI	GGGAC	1 cut(s)	731
FatI	CATG	7 cut(s)	130, 238, 372, 597, 601, 724, 831
Fnu4HI	GCNGC	1 cut(s)	82
FokI	GGATG	3 cut(s)	17, 511, 890
Fsp4HI	GCNGC	1 cut(s)	82
FspBI	CTAG	4 cut(s)	386, 536, 560, 656
GluI	GCNGC	1 cut(s)	82
GsuI	CTGGAG	1 cut(s)	509
HaeIII	GGCC	3 cut(s)	259, 649, 660
HapII	CCGG	1 cut(s)	851
Hin1II	CATG	7 cut(s)	134, 242, 376, 601, 605, 728, 835
HincII	GTYRAC	1 cut(s)	829
HindII	GTYRAC	1 cut(s)	829
HindIII	AAGCTT	1 cut(s)	773
HinfI	GANTC	3 cut(s)	212, 570, 954
HpaII	CCGG	1 cut(s)	851
HphI	GGTGA	3 cut(s)	64, 640, 840
Hpy166II	GTNNAC	4 cut(s)	340, 438, 829, 991
Hpy188I	TCNGA	7 cut(s)	195, 211, 217, 364, 510, 928, 943
Hpy188III	TCNNGA	3 cut(s)	131, 488, 619
Hpy8I	GTNNAC	4 cut(s)	340, 438, 829, 991
HpyAV	CCTTC	6 cut(s)	192, 602, 607, 799, 877, 967
HpyCH4III	ACNGT	5 cut(s)	22, 223, 337, 344, 706
HpyCH4IV	ACGT	2 cut(s)	33, 735
HpyCH4V	TGCA	4 cut(s)	242, 586, 601, 642
HpyF10VI	GCNNNNNNNGC	2 cut(s)	772, 817
HpyF3I	CTNAG	2 cut(s)	216, 548
HpySE526I	ACGT	2 cut(s)	33, 735
Hsp92II	CATG	7 cut(s)	134, 242, 376, 601, 605, 728, 835
Kzo9I	GATC	3 cut(s)	54, 886, 943
Lsp1109I	GCAGC	1 cut(s)	68
LweI	GCATC	2 cut(s)	415, 932
MabI	ACCWGGT	1 cut(s)	123
MaeI	CTAG	4 cut(s)	386, 536, 560, 656
MaeII	ACGT	2 cut(s)	33, 735
MaeIII	GTNAC	3 cut(s)	7, 16, 736
MalI	GATC	3 cut(s)	56, 888, 945
MbiI	CCGCTC	1 cut(s)	136
MboI	GATC	3 cut(s)	54, 886, 943
MboII	GAAGA	4 cut(s)	169, 351, 432, 446
MfeI	CAATTG	1 cut(s)	76
MflI	RGATCY	1 cut(s)	886
MluCI	AATT	7 cut(s)	76, 161, 167, 502, 531, 839, 995
MnlI	CCTC	6 cut(s)	166, 308, 543, 624, 696, 949
Mph1103I	ATGCAT	1 cut(s)	603
MseI	TTAA	2 cut(s)	47, 732
MslI	CAYNNNNRTG	2 cut(s)	443, 984
MspA1I	CMGCKG	1 cut(s)	515
MspI	CCGG	1 cut(s)	851
MspR9I	CCNGG	2 cut(s)	125, 750
MunI	CAATTG	1 cut(s)	76
MvaI	CCWGG	2 cut(s)	125, 750
MwoI	GCNNNNNNNGC	2 cut(s)	772, 817
NdeII	GATC	3 cut(s)	54, 886, 943
NlaIII	CATG	7 cut(s)	134, 242, 376, 601, 605, 728, 835
NlaIV	GGNNCC	2 cut(s)	635, 888
NsiI	ATGCAT	1 cut(s)	603
NspI	RCATGY	2 cut(s)	601, 605
PaeI	GCATGC	1 cut(s)	601
PagI	TCATGA	1 cut(s)	130
PasI	CCCWGGG	1 cut(s)	749
PfeI	GAWTC	3 cut(s)	212, 570, 954
PkrI	GCNGC	1 cut(s)	83
PmaCI	CACGTG	1 cut(s)	34
PmlI	CACGTG	1 cut(s)	34
Ppu21I	YACGTR	1 cut(s)	34
PpuMI	RGGWCCY	1 cut(s)	616
Psp1406I	AACGTT	1 cut(s)	735
Psp5II	RGGWCCY	1 cut(s)	616
Psp6I	CCWGG	2 cut(s)	123, 748
PspCI	CACGTG	1 cut(s)	34
PspGI	CCWGG	2 cut(s)	123, 748
PspN4I	GGNNCC	2 cut(s)	635, 888
PspPI	GGNCC	1 cut(s)	616
PspPPI	RGGWCCY	1 cut(s)	616
PsuI	RGATCY	1 cut(s)	886
PvuII	CAGCTG	1 cut(s)	515
RsaI	GTAC	3 cut(s)	204, 330, 402
RsaNI	GTAC	3 cut(s)	203, 329, 401
RseI	CAYNNNNRTG	2 cut(s)	443, 984
SaqAI	TTAA	2 cut(s)	47, 732
SatI	GCNGC	1 cut(s)	82
Sau3AI	GATC	3 cut(s)	54, 886, 943
Sau96I	GGNCC	1 cut(s)	616
ScrFI	CCNGG	2 cut(s)	125, 750
SexAI	ACCWGGT	1 cut(s)	123
SfaNI	GCATC	2 cut(s)	415, 932
SfcI	CTRYAG	1 cut(s)	396
SinI	GGWCC	1 cut(s)	616
SmiMI	CAYNNNNRTG	2 cut(s)	443, 984
SphI	GCATGC	1 cut(s)	601
Sse9I	AATT	7 cut(s)	76, 161, 167, 502, 531, 839, 995
SsiI	CCGC	4 cut(s)	136, 154, 226, 667
SspMI	CTAG	4 cut(s)	386, 536, 560, 656
StyD4I	CCNGG	2 cut(s)	123, 748
StyI	CCWWGG	2 cut(s)	311, 655
TaaI	ACNGT	5 cut(s)	22, 223, 337, 344, 706
TaiI	ACGT	2 cut(s)	36, 738
TaqI	TCGA	2 cut(s)	378, 792
TasI	AATT	7 cut(s)	76, 161, 167, 502, 531, 839, 995
TatI	WGTACW	2 cut(s)	328, 400
TfiI	GAWTC	3 cut(s)	212, 570, 954
Tru1I	TTAA	2 cut(s)	47, 732
Tru9I	TTAA	2 cut(s)	47, 732
TscAI	CASTG	1 cut(s)	27
TseI	GCWGC	1 cut(s)	81
TspDTI	ATGAA	4 cut(s)	91, 119, 361, 515
TspRI	CASTG	1 cut(s)	27
VpaK11BI	GGWCC	1 cut(s)	616
XagI	CCTNNNNNAGG	1 cut(s)	654
XapI	RAATTY	3 cut(s)	502, 531, 839
XceI	RCATGY	2 cut(s)	601, 605
XmaJI	CCTAGG	1 cut(s)	655
XspI	CTAG	4 cut(s)	386, 536, 560, 656
Zsp2I	ATGCAT	1 cut(s)	603

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.