Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0000936

Physical Location & Seq

Genomic Coordinates Reverse (-)

23460382 .. 23464442

Gene Structure 4061 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G018160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1455 bp

ATGTGGGCAAAGTTGCATATTACATGCATGCATGTTGAAGGGAAGCTGTTGATTGGGGTTAAGTTTCTTCGTAGGTGGCCTTTCCTTGGCCGTTTGCGGATATGCTTCACTGAGCCTCCATATTTTCAGATGACCGTCAAGCCTATTTTTACACATGGCCTTGATGTTACAGTTCTTCCAGGAATTGCTGGGTGGCTGGAAAAGCTTCTTTCCATTGCCTTTGAGCAGACCCTTGTTGAGCCAAATATGCTGGTTGTTGACATGGAGAAATTCGCCTCACCGCAGCAAGAGAGTTGGTTCTCTGTGAATGAAAAGGAATCTCTTGGACATGTCAGAGTGGAAGTTATTGAAGCATCTGACATCAAAGCTGCAGATCTAAATGGATTATCTGACCCTTATGTTAAGGGTCAATTGGGCCTTTACCGGTTCAGGACGAAGACACAAAAGAAAACACTGGCTCCAAAATGGCTTGAAGAATTCAAGATGCCCATTATTACATGGGATTCATCTACTGTGCTATCTATTGAAGTTCGTGACAAGGACCGATTTGTTGATGATTGCCTTGGATTCTGCTGCATTAACATTGGTGAGTATAGAGATGGCCAAAGGCATGACATGTGGTTGCCTCTTCAGAATATTAAAACAGGAAGGATCCATCTTGCAGTAACTGTGGTTGAAGATAATCCCAAGGGGGGTGATAATCCAAATGTTGAGGAAACACCAAATGTGGAAGATGAAAGAAAAAGGTTTGCCAATGACACTAGTAATAAAAGTTCCTTCTCATCTGCATCATCAGAAAAGTTTGACAAAGTGGCAGATAACTTTGAGCCAATTGATGTTGATGGGCAAAGAGAGACTGGAATATGGGTCCATCACCCAGGAAGTGAAGTTTCACAAACTTGGGAGAGTAGAAAAGGAAAGAGTCGGCTCCTTGATAATGAGATTCAAAATGATACTGGTGGCCATAGTTCAGTCACCTCTGTCTCCCCAACTAATGAGGACAGTGGCACTGAAAAGAATCATGAGGATAAACACAGGATGAGAGCAGTTCGCAAGGGTCTAAACAGGATCTGCTCGGTATTCCACAAGAATTCCAAAAAGGAGAATGATTCAAGCAGCTTTAGAGAGACTGTTGGATCTGGACATGCTACTATTCAGGAAATTAGTGAAAAAGATATTGCAGTAAGATTTATTGTGGAGGATGATCTTTCCAACCCTCAAGAGGGCAAGGGTTTGAAGGAAGAAGGGGTTGTCACTTCTGGAGGGAGTGGTTCAAAGGGAAAGGGCAAGGGCAAGGGTTTAGACAAGGCAAAGAGTTTCCTTAAACCAGCAAAAAAATCTTCTCGAGATTTTAGGAAGTGTCAAAGTGATTCTTACAAAGGGAGGGAAAGAAAAACTTTAGAAGAATTTAACTCTACTGATGAGGATGATGCTCCTCCAAAACAGTTTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005886 GO:0012505 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00290 ko00650 ko00660 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00290 map00650 map00660 map00770 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

C2 SMP_LBD

Protein Analysis

484

Amino Acids

54.6

Weight (kDa)

6.7

Isoelectric Point (pI)

37.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SMP_MUG190-like	PF25669	13 - 91	1.2e-07	MUG190-like SMP domain
C2	PF00168	109 - 210	1.2e-21	C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000936)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53590 AT3G14590 AT3G14590 AT3G14590 AT3G14590 AT3G14590
fragaria_vesca	FvH4_3g16980 FvH4_3g16980 FvH4_3g16980 FvH4_3g16980 FvH4_3g16980 FvH4_3g17020 FvH4_3g17020 FvH4_3g17020 FvH4_3g17020 FvH4_3g17020 FvH4_3g17020
malus_domestica	MD00G1185500.v1.1 MD00G1185600.v1.1 MD03G1254200.v1.1 MD03G1254900.v1.1 MD11G1275800.v1.1 MD11G1276000.v1.1
prunus_persica	Prupe.4G152200_v2.0.a1 Prupe.4G152200_v2.0.a1 Prupe.4G152300_v2.0.a1 Prupe.4G152300_v2.0.a1 Prupe.4G152300_v2.0.a1 Prupe.4G152300_v2.0.a1 Prupe.4G152300_v2.0.a1 Prupe.4G152300_v2.0.a1 Prupe.4G152300_v2.0.a1
pyrus_communis	pycom03g20170 pycom03g20190 pycom11g24400
rosa_chinensis	RchiOBHm_Chr2g0135571 RchiOBHm_Chr2g0159501 RchiOBHm_Chr2g0159511 RchiOBHm_Chr5g0028301 RchiOBHm_Chr5g0028351 RchiOBHm_Chr5g0039631
rosa_laevigata	RLG00000033080 RLG00000033088
rosa_multiflora	Rmu_sc0001020.1_g000001 Rmu_sc0002481.1_g000040 Rmu_sc0008526.1_g000010
rosa_roxburghii	Rroxscaffold_1G00051350 Rroxscaffold_1G00051420 Rroxscaffold_1G00051430
rosa_rugosa	Rorug05G0105600
rosa_samantha	Rh1AG292900 Rh4AG059100 Rh5AG199100 Rh5AG199600 Rh5BG197700 Rh5BG198100 Rh5CG217400 Rh5CG218100 Rh5DG199400 Rh5DG200000 Rh7DG370100
rosa_wichuraiana	Rw4G016870 Rw5G018160 Rw5G018190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	97, 281
AclWI	GGATC	4 cut(s)	646, 659, 1076, 1144
AcoI	YGGCCR	3 cut(s)	88, 601, 961
AcsI	RAATTY	4 cut(s)	269, 476, 1090, 1406
AcuI	CTGAAG	1 cut(s)	614
AfiI	CCNNNNNNNGG	4 cut(s)	86, 692, 1222, 1223
AflIII	ACRYGT	2 cut(s)	328, 615
AgeI	ACCGGT	1 cut(s)	423
AhlI	ACTAGT	1 cut(s)	761
AjnI	CCWGG	2 cut(s)	178, 877
AluBI	AGCT	4 cut(s)	46, 205, 368, 1119
AluI	AGCT	4 cut(s)	46, 205, 368, 1119
Alw26I	GTCTC	3 cut(s)	848, 988, 1121
AlwI	GGATC	4 cut(s)	646, 659, 1076, 1144
AlwNI	CAGNNNCTG	2 cut(s)	668, 1071
Ama87I	CYCGRG	1 cut(s)	1344
AoxI	GGCC	6 cut(s)	77, 88, 157, 415, 601, 961
ApeKI	GCWGC	4 cut(s)	283, 368, 573, 1116
ApoI	RAATTY	4 cut(s)	269, 476, 1090, 1406
AsiGI	ACCGGT	1 cut(s)	423
Asp700I	GAANNNNTTC	1 cut(s)	204
AspS9I	GGNCC	3 cut(s)	415, 541, 868
AsuHPI	GGTGA	5 cut(s)	270, 599, 707, 866, 967
AvaI	CYCGRG	1 cut(s)	1344
AvaII	GGWCC	2 cut(s)	541, 868
BalI	TGGCCA	2 cut(s)	603, 963
BamHI	GGATCC	1 cut(s)	651
BbsI	GAAGAC	1 cut(s)	443
BbvI	GCAGC	4 cut(s)	295, 355, 560, 1128
BccI	CCATC	4 cut(s)	593, 663, 836, 879
BceAI	ACGGC	1 cut(s)	75
BciT130I	CCWGG	2 cut(s)	180, 879
BcoDI	GTCTC	3 cut(s)	848, 988, 1121
BcuI	ACTAGT	1 cut(s)	761
BfaI	CTAG	1 cut(s)	762
BfmI	CTRYAG	1 cut(s)	369
BglII	AGATCT	1 cut(s)	373
BisI	GCNGC	4 cut(s)	284, 369, 574, 1117
BlsI	GCNGC	4 cut(s)	285, 370, 575, 1118
Bme1390I	CCNGG	2 cut(s)	180, 879
Bme18I	GGWCC	2 cut(s)	541, 868
BmeT110I	CYCGRG	1 cut(s)	1344
BmgT120I	GGNCC	3 cut(s)	415, 541, 868
BmiI	GGNNCC	4 cut(s)	459, 653, 869, 929
BmrFI	CCNGG	2 cut(s)	180, 879
BmsI	GCATC	4 cut(s)	362, 474, 797, 1420
BpiI	GAAGAC	1 cut(s)	443
BpmI	CTGGAG	1 cut(s)	1281
BpuEI	CTTGAG	1 cut(s)	1203
BsaJI	CCNNGG	4 cut(s)	85, 562, 687, 877
BsaWI	WCCGGW	1 cut(s)	423
BsaXI	ACNNNNNCTCC	4 cut(s)	100, 130, 442, 472
Bsc4I	CCNNNNNNNGG	4 cut(s)	86, 692, 1222, 1223
Bse118I	RCCGGY	1 cut(s)	423
Bse1I	ACTGG	3 cut(s)	459, 862, 961
Bse3DI	GCAATG	1 cut(s)	213
BseBI	CCWGG	2 cut(s)	180, 879
BseDI	CCNNGG	4 cut(s)	85, 562, 687, 877
BseGI	GGATG	3 cut(s)	1044, 1207, 1432
BseLI	CCNNNNNNNGG	4 cut(s)	86, 692, 1222, 1223
BseMI	GCAATG	1 cut(s)	213
BseMII	CTCAG	1 cut(s)	102
BseNI	ACTGG	3 cut(s)	459, 862, 961
BseRI	GAGGAG	1 cut(s)	1425
BseXI	GCAGC	4 cut(s)	295, 355, 560, 1128
BseYI	CCCAGC	1 cut(s)	188
BshFI	GGCC	6 cut(s)	79, 90, 159, 417, 603, 963
BshTI	ACCGGT	1 cut(s)	423
BsiHKCI	CYCGRG	1 cut(s)	1344
BsiSI	CCGG	1 cut(s)	424
BslI	CCNNNNNNNGG	4 cut(s)	86, 692, 1222, 1223
BsmAI	GTCTC	3 cut(s)	848, 988, 1121
BsnI	GGCC	6 cut(s)	79, 90, 159, 417, 603, 963
BsoBI	CYCGRG	1 cut(s)	1344
Bsp143I	GATC	5 cut(s)	373, 651, 1068, 1136, 1204
BspACI	CCGC	2 cut(s)	97, 281
BspANI	GGCC	6 cut(s)	79, 90, 159, 417, 603, 963
BspCNI	CTCAG	1 cut(s)	103
BspHI	TCATGA	1 cut(s)	1021
BspLI	GGNNCC	4 cut(s)	459, 653, 869, 929
BspMAI	CTGCAG	1 cut(s)	373
BspPI	GGATC	4 cut(s)	646, 659, 1076, 1144
BsrDI	GCAATG	1 cut(s)	213
BsrFI	RCCGGY	1 cut(s)	423
BsrI	ACTGG	3 cut(s)	459, 862, 961
BssAI	RCCGGY	1 cut(s)	423
BssECI	CCNNGG	4 cut(s)	85, 562, 687, 877
BssMI	GATC	5 cut(s)	373, 651, 1068, 1136, 1204
BssT1I	CCWWGG	3 cut(s)	85, 562, 687
Bst2UI	CCWGG	2 cut(s)	180, 879
Bst4CI	ACNGT	7 cut(s)	136, 172, 514, 670, 1004, 1132, 1446
Bst6I	CTCTTC	1 cut(s)	633
BstC8I	GCNNGC	1 cut(s)	29
BstDEI	CTNAG	1 cut(s)	111
BstF5I	GGATG	3 cut(s)	1044, 1207, 1432
BstKTI	GATC	5 cut(s)	376, 654, 1071, 1139, 1207
BstMAI	GTCTC	3 cut(s)	848, 988, 1121
BstMBI	GATC	5 cut(s)	373, 651, 1068, 1136, 1204
BstMWI	GCNNNNNNNGC	2 cut(s)	202, 247
BstNI	CCWGG	2 cut(s)	180, 879
BstNSI	RCATGY	6 cut(s)	27, 31, 35, 332, 619, 1148
BstSCI	CCNGG	2 cut(s)	178, 877
BstSFI	CTRYAG	1 cut(s)	369
BstV1I	GCAGC	4 cut(s)	295, 355, 560, 1128
BstV2I	GAAGAC	1 cut(s)	443
BstX2I	RGATCY	4 cut(s)	373, 651, 1068, 1136
BstYI	RGATCY	4 cut(s)	373, 651, 1068, 1136
BsuRI	GGCC	6 cut(s)	79, 90, 159, 417, 603, 963
BtsCI	GGATG	3 cut(s)	1044, 1207, 1432
BtsIMutI	CAGTG	4 cut(s)	108, 452, 1008, 1009
Cac8I	GCNNGC	1 cut(s)	29
CaiI	CAGNNNCTG	2 cut(s)	668, 1071
CciI	TCATGA	1 cut(s)	1021
Cfr10I	RCCGGY	1 cut(s)	423
Cfr13I	GGNCC	3 cut(s)	415, 541, 868
CspAI	ACCGGT	1 cut(s)	423
DdeI	CTNAG	1 cut(s)	111
DpnI	GATC	5 cut(s)	375, 653, 1070, 1138, 1206
DpnII	GATC	5 cut(s)	373, 651, 1068, 1136, 1204
DraI	TTTAAA	1 cut(s)	1450
EaeI	YGGCCR	3 cut(s)	88, 601, 961
Eam1104I	CTCTTC	1 cut(s)	633
EarI	CTCTTC	1 cut(s)	633
Eco130I	CCWWGG	3 cut(s)	85, 562, 687
Eco47I	GGWCC	2 cut(s)	541, 868
Eco57I	CTGAAG	1 cut(s)	614
Eco88I	CYCGRG	1 cut(s)	1344
EcoRI	GAATTC	2 cut(s)	476, 1090
EcoRII	CCWGG	2 cut(s)	178, 877
EcoT14I	CCWWGG	3 cut(s)	85, 562, 687
EcoT22I	ATGCAT	2 cut(s)	29, 33
ErhI	CCWWGG	3 cut(s)	85, 562, 687
FalI	AAGNNNNNCTT	4 cut(s)	1357, 1389, 1381, 1413
Fnu4HI	GCNGC	4 cut(s)	284, 369, 574, 1117
FokI	GGATG	3 cut(s)	1051, 1214, 1439
Fsp4HI	GCNGC	4 cut(s)	284, 369, 574, 1117
FspBI	CTAG	1 cut(s)	762
GluI	GCNGC	4 cut(s)	284, 369, 574, 1117
GsaI	CCCAGC	1 cut(s)	192
GsuI	CTGGAG	1 cut(s)	1281
HaeIII	GGCC	6 cut(s)	79, 90, 159, 417, 603, 963
HapII	CCGG	1 cut(s)	424
HincII	GTYRAC	1 cut(s)	259
HindII	GTYRAC	1 cut(s)	259
HindIII	AAGCTT	1 cut(s)	203
HinfI	GANTC	8 cut(s)	317, 503, 567, 922, 943, 1018, 1109, 1370
HpaII	CCGG	1 cut(s)	424
HphI	GGTGA	5 cut(s)	270, 599, 707, 866, 967
Hpy166II	GTNNAC	1 cut(s)	259
Hpy188I	TCNGA	6 cut(s)	129, 335, 358, 391, 633, 796
Hpy8I	GTNNAC	1 cut(s)	259
HpyAV	CCTTC	5 cut(s)	32, 642, 787, 1231, 1238
HpyCH4III	ACNGT	7 cut(s)	136, 172, 514, 670, 1004, 1132, 1446
HpyCH4V	TGCA	8 cut(s)	16, 27, 31, 371, 576, 662, 788, 1181
HpyF10VI	GCNNNNNNNGC	2 cut(s)	202, 247
HpyF3I	CTNAG	1 cut(s)	111
Kzo9I	GATC	5 cut(s)	373, 651, 1068, 1136, 1204
LmnI	GCTCC	3 cut(s)	463, 933, 1438
Lsp1109I	GCAGC	4 cut(s)	295, 355, 560, 1128
LweI	GCATC	4 cut(s)	362, 474, 797, 1420
MaeI	CTAG	1 cut(s)	762
MaeIII	GTNAC	5 cut(s)	166, 533, 664, 973, 1252
MalI	GATC	5 cut(s)	375, 653, 1070, 1138, 1206
MboI	GATC	5 cut(s)	373, 651, 1068, 1136, 1204
MfeI	CAATTG	2 cut(s)	410, 831
MflI	RGATCY	4 cut(s)	373, 651, 1068, 1136
MlsI	TGGCCA	2 cut(s)	603, 963
MluCI	AATT	8 cut(s)	183, 269, 410, 476, 831, 1090, 1161, 1406
MluNI	TGGCCA	2 cut(s)	603, 963
MlyI	GAGTC	1 cut(s)	931
MmeI	TCCRAC	2 cut(s)	1114, 1236
Mox20I	TGGCCA	2 cut(s)	603, 963
Mph1103I	ATGCAT	2 cut(s)	29, 33
MroXI	GAANNNNTTC	1 cut(s)	204
MscI	TGGCCA	2 cut(s)	603, 963
MseI	TTAA	7 cut(s)	60, 402, 579, 639, 1323, 1410, 1449
Msp20I	TGGCCA	2 cut(s)	603, 963
MspI	CCGG	1 cut(s)	424
MspR9I	CCNGG	2 cut(s)	180, 879
MunI	CAATTG	2 cut(s)	410, 831
MvaI	CCWGG	2 cut(s)	180, 879
MwoI	GCNNNNNNNGC	2 cut(s)	202, 247
NdeII	GATC	5 cut(s)	373, 651, 1068, 1136, 1204
NlaIV	GGNNCC	4 cut(s)	459, 653, 869, 929
NmuCI	GTSAC	3 cut(s)	533, 973, 1252
NsiI	ATGCAT	2 cut(s)	29, 33
NspI	RCATGY	6 cut(s)	27, 31, 35, 332, 619, 1148
PaeI	GCATGC	1 cut(s)	31
PaeR7I	CTCGAG	1 cut(s)	1344
PagI	TCATGA	1 cut(s)	1021
PciI	ACATGT	2 cut(s)	328, 615
PdmI	GAANNNNTTC	1 cut(s)	204
PfeI	GAWTC	7 cut(s)	317, 503, 567, 943, 1018, 1109, 1370
PfoI	TCCNGGA	1 cut(s)	178
PinAI	ACCGGT	1 cut(s)	423
PkrI	GCNGC	4 cut(s)	285, 370, 575, 1118
PleI	GAGTC	1 cut(s)	930
PpsI	GAGTC	1 cut(s)	930
PscI	ACATGT	2 cut(s)	328, 615
Psp6I	CCWGG	2 cut(s)	178, 877
PspFI	CCCAGC	1 cut(s)	188
PspGI	CCWGG	2 cut(s)	178, 877
PspN4I	GGNNCC	4 cut(s)	459, 653, 869, 929
PspPI	GGNCC	3 cut(s)	415, 541, 868
PsrI	GAACNNNNNNTAC	2 cut(s)	757, 789
PstI	CTGCAG	1 cut(s)	373
PstNI	CAGNNNCTG	2 cut(s)	668, 1071
PsuI	RGATCY	4 cut(s)	373, 651, 1068, 1136
SaqAI	TTAA	7 cut(s)	60, 402, 579, 639, 1323, 1410, 1449
SatI	GCNGC	4 cut(s)	284, 369, 574, 1117
Sau3AI	GATC	5 cut(s)	373, 651, 1068, 1136, 1204
Sau96I	GGNCC	3 cut(s)	415, 541, 868
SchI	GAGTC	1 cut(s)	931
ScrFI	CCNGG	2 cut(s)	180, 879
SetI	ASST	7 cut(s)	48, 77, 207, 370, 749, 980, 1121
SfaNI	GCATC	4 cut(s)	362, 474, 797, 1420
SfcI	CTRYAG	1 cut(s)	369
Sfr274I	CTCGAG	1 cut(s)	1344
SinI	GGWCC	2 cut(s)	541, 868
SlaI	CTCGAG	1 cut(s)	1344
SmlI	CTYRAG	2 cut(s)	1218, 1344
SmoI	CTYRAG	2 cut(s)	1218, 1344
SpeI	ACTAGT	1 cut(s)	761
SphI	GCATGC	1 cut(s)	31
Sse9I	AATT	8 cut(s)	183, 269, 410, 476, 831, 1090, 1161, 1406
SsiI	CCGC	2 cut(s)	97, 281
SspI	AATATT	1 cut(s)	637
SspMI	CTAG	1 cut(s)	762
StyD4I	CCNGG	2 cut(s)	178, 877
StyI	CCWWGG	3 cut(s)	85, 562, 687
TaaI	ACNGT	7 cut(s)	136, 172, 514, 670, 1004, 1132, 1446
TaqI	TCGA	1 cut(s)	1345
TaqII	GACCGA	1 cut(s)	558
TasI	AATT	8 cut(s)	183, 269, 410, 476, 831, 1090, 1161, 1406
TfiI	GAWTC	7 cut(s)	317, 503, 567, 943, 1018, 1109, 1370
Tru1I	TTAA	7 cut(s)	60, 402, 579, 639, 1323, 1410, 1449
Tru9I	TTAA	7 cut(s)	60, 402, 579, 639, 1323, 1410, 1449
TscAI	CASTG	4 cut(s)	115, 459, 1009, 1015
TseFI	GTSAC	3 cut(s)	533, 973, 1252
TseI	GCWGC	4 cut(s)	283, 368, 573, 1116
Tsp45I	GTSAC	3 cut(s)	533, 973, 1252
TspDTI	ATGAA	3 cut(s)	324, 495, 750
TspRI	CASTG	4 cut(s)	115, 459, 1009, 1015
VpaK11BI	GGWCC	2 cut(s)	541, 868
XapI	RAATTY	4 cut(s)	269, 476, 1090, 1406
XceI	RCATGY	6 cut(s)	27, 31, 35, 332, 619, 1148
XhoI	CTCGAG	1 cut(s)	1344
XmnI	GAANNNNTTC	1 cut(s)	204
XspI	CTAG	1 cut(s)	762
Zsp2I	ATGCAT	2 cut(s)	29, 33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.