Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0000936

Physical Location & Seq

Genomic Coordinates Reverse (-)

52294012 .. 52310449

Gene Structure 16438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG292900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGTCTAAAGCTCGCGTCGCCGTCGACATTAACGTCCTCTGCCGCAAGGATTTTCGGGACTACGAGTCCTTCATCGTCCAATGGGGAAAGCTTGTCAACAATGCCTACAGATTGAAACTTTCACGTAAGGGTTTCTGTACTAGTGCAGCTGCTAAAGTCTCAAGCTCCAATGGTGCTCAACCAAGCAATCTATGGTTTGTGGGGGTTTTGGTGTATGGGTCTAGGAGAGCTTTTGCTGTGGAGGGTGTGGTCAATGCAAGGTTTGATTTTGGCGGCGCTTTTGGGTCTCTCGGCTTTTTTCTCAATGGCAGAGACTTCGATTACCACGCTATGGCCTTGGAAGAATTTACTTGTGTACTCAGTGTTGTCAATATTGGAGCAACTACTTTAGTTACAGAAGCTGCAATAGCGATATTTGGTGAAGGTGGTGGTGCAGCAACTGGAGTAATGATTCTGTTGATTGGGGTTAAGTTTCTTCGTAGGTGGCCTTTCCTTGGCCATCTGCGGATATGCTTCATTGAGCCTCCATATTTTCAGATGACCGTCAAGCCTATTTTTACACATGGCCTTGATGTTACAGTTCTTCCAGGAATTGCTGGGTGGCTGGACAAGCTTCTTTCCATTGCCTTTGAGCAGACCCTTGTTGAGCCAAATATGCTGGTTGTTGACATGGAGAAATTCGCCTCACCGCAGCAAGAGAGTTGGTTCTCTGTGAATGAAAAGGAATCTCTTGGACATGTCAGAGTAGAAGTTATTGAAGCATCTGACATCAAAGCTGCAGATCTAAATGGATTATCTGACCCTTATGTTAAGGGTCAATTGGGCCTTTACCGGTTCAGGACGAAGACACAAAAGAAAACACTGGCTCCAAAATGGCATGAAGAATTCAAGTTGCCCATTATTACATGGGATTCATCTACTGTGCTATCTATTGAAGTTCGTGACAAGGACCGATTTGTTGATGATTGCCTTGGGGCTGACTTGGAAGTGAAGAGAAAAGTAGGGACTGAGAGTAATGGGCACAACCATTTCGAGACAGCATGCAAAATTGCAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005886 GO:0012505 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00290 ko00650 ko00660 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00290 map00650 map00660 map00770 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

C2 SMP_LBD

Protein Analysis

352

Amino Acids

39.12

Weight (kDa)

8.13

Isoelectric Point (pI)

32.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SMP_MUG190-like	PF25669	156 - 227	1.1e-07	MUG190-like SMP domain
C2	PF00168	245 - 325	2.3e-18	C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000936)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53590 AT3G14590 AT3G14590 AT3G14590 AT3G14590 AT3G14590
fragaria_vesca	FvH4_3g16980 FvH4_3g16980 FvH4_3g16980 FvH4_3g16980 FvH4_3g16980 FvH4_3g17020 FvH4_3g17020 FvH4_3g17020 FvH4_3g17020 FvH4_3g17020 FvH4_3g17020
malus_domestica	MD00G1185500.v1.1 MD00G1185600.v1.1 MD03G1254200.v1.1 MD03G1254900.v1.1 MD11G1275800.v1.1 MD11G1276000.v1.1
prunus_persica	Prupe.4G152200_v2.0.a1 Prupe.4G152200_v2.0.a1 Prupe.4G152300_v2.0.a1 Prupe.4G152300_v2.0.a1 Prupe.4G152300_v2.0.a1 Prupe.4G152300_v2.0.a1 Prupe.4G152300_v2.0.a1 Prupe.4G152300_v2.0.a1 Prupe.4G152300_v2.0.a1
pyrus_communis	pycom03g20170 pycom03g20190 pycom11g24400
rosa_chinensis	RchiOBHm_Chr2g0135571 RchiOBHm_Chr2g0159501 RchiOBHm_Chr2g0159511 RchiOBHm_Chr5g0028301 RchiOBHm_Chr5g0028351 RchiOBHm_Chr5g0039631
rosa_laevigata	RLG00000033080 RLG00000033088
rosa_multiflora	Rmu_sc0001020.1_g000001 Rmu_sc0002481.1_g000040 Rmu_sc0008526.1_g000010
rosa_roxburghii	Rroxscaffold_1G00051350 Rroxscaffold_1G00051420 Rroxscaffold_1G00051430
rosa_rugosa	Rorug05G0105600
rosa_samantha	Rh1AG292900 Rh4AG059100 Rh5AG199100 Rh5AG199600 Rh5BG197700 Rh5BG198100 Rh5CG217400 Rh5CG218100 Rh5DG199400 Rh5DG200000 Rh7DG370100
rosa_wichuraiana	Rw4G016870 Rw5G018160 Rw5G018190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	32
AccB7I	CCANNNNNTGG	1 cut(s)	331
AccI	GTMKAC	1 cut(s)	24
AccII	CGCG	1 cut(s)	15
AciI	CCGC	4 cut(s)	43, 273, 505, 689
AcoI	YGGCCR	1 cut(s)	496
AcsI	RAATTY	3 cut(s)	344, 677, 884
AfaI	GTAC	2 cut(s)	139, 357
AfiI	CCNNNNNNNGG	2 cut(s)	331, 494
AflIII	ACRYGT	1 cut(s)	736
AgeI	ACCGGT	1 cut(s)	831
AgsI	TTSAA	4 cut(s)	115, 758, 889, 935
AhdI	GACNNNNNGTC	1 cut(s)	64
AhlI	ACTAGT	1 cut(s)	140
AjnI	CCWGG	1 cut(s)	586
AluBI	AGCT	8 cut(s)	11, 91, 149, 165, 230, 401, 613, 776
AluI	AGCT	8 cut(s)	11, 91, 149, 165, 230, 401, 613, 776
Alw21I	GWGCWC	1 cut(s)	178
Alw26I	GTCTC	4 cut(s)	163, 291, 306, 1028
AlwNI	CAGNNNCTG	2 cut(s)	401, 440
AoxI	GGCC	5 cut(s)	333, 485, 496, 565, 823
ApeKI	GCWGC	6 cut(s)	146, 149, 401, 434, 691, 776
ApoI	RAATTY	3 cut(s)	344, 677, 884
AsiGI	ACCGGT	1 cut(s)	831
AspLEI	GCGC	1 cut(s)	278
AspS9I	GGNCC	2 cut(s)	823, 949
AsuHPI	GGTGA	2 cut(s)	431, 678
AvaII	GGWCC	1 cut(s)	949
BaeGI	GKGCMC	1 cut(s)	1023
BalI	TGGCCA	1 cut(s)	498
BbsI	GAAGAC	1 cut(s)	851
Bbv12I	GWGCWC	1 cut(s)	178
BbvI	GCAGC	6 cut(s)	136, 158, 388, 446, 703, 763
BccI	CCATC	1 cut(s)	507
BceAI	ACGGC	1 cut(s)	5
BcgI	CGANNNNNNTGC	2 cut(s)	298, 332
BciT130I	CCWGG	1 cut(s)	588
BcoDI	GTCTC	4 cut(s)	163, 291, 306, 1028
BcuI	ACTAGT	1 cut(s)	140
BfaI	CTAG	2 cut(s)	141, 222
BfmI	CTRYAG	2 cut(s)	106, 777
BfoI	RGCGCY	1 cut(s)	279
BglII	AGATCT	1 cut(s)	781
BisI	GCNGC	8 cut(s)	43, 147, 150, 274, 402, 435, 692, 777
BlsI	GCNGC	8 cut(s)	44, 148, 151, 275, 403, 436, 693, 778
Bme1390I	CCNGG	1 cut(s)	588
Bme18I	GGWCC	1 cut(s)	949
BmeRI	GACNNNNNGTC	1 cut(s)	64
BmgT120I	GGNCC	2 cut(s)	823, 949
BmiI	GGNNCC	1 cut(s)	867
BmrFI	CCNGG	1 cut(s)	588
BmsI	GCATC	1 cut(s)	770
BpiI	GAAGAC	1 cut(s)	851
BpmI	CTGGAG	1 cut(s)	462
BpuEI	CTTGAG	1 cut(s)	145
BsaAI	YACGTR	1 cut(s)	125
BsaI	GGTCTC	1 cut(s)	291
BsaJI	CCNNGG	3 cut(s)	336, 493, 970
BsaWI	WCCGGW	1 cut(s)	831
BsaXI	ACNNNNNCTCC	2 cut(s)	850, 880
Bsc4I	CCNNNNNNNGG	2 cut(s)	331, 494
Bse118I	RCCGGY	1 cut(s)	831
Bse1I	ACTGG	2 cut(s)	445, 867
Bse3DI	GCAATG	1 cut(s)	621
BseBI	CCWGG	1 cut(s)	588
BseDI	CCNNGG	3 cut(s)	336, 493, 970
BseLI	CCNNNNNNNGG	2 cut(s)	331, 494
BseMI	GCAATG	1 cut(s)	621
BseMII	CTCAG	2 cut(s)	373, 999
BseNI	ACTGG	2 cut(s)	445, 867
BseSI	GKGCMC	1 cut(s)	1023
BseXI	GCAGC	6 cut(s)	136, 158, 388, 446, 703, 763
BseYI	CCCAGC	1 cut(s)	596
BsgI	GTGCAG	2 cut(s)	165, 453
Bsh1236I	CGCG	1 cut(s)	15
BshFI	GGCC	5 cut(s)	335, 487, 498, 567, 825
BshTI	ACCGGT	1 cut(s)	831
BsiHKAI	GWGCWC	1 cut(s)	178
BsiSI	CCGG	1 cut(s)	832
BslFI	GGGAC	2 cut(s)	71, 1018
BslI	CCNNNNNNNGG	2 cut(s)	331, 494
BsmAI	GTCTC	4 cut(s)	163, 291, 306, 1028
BsmFI	GGGAC	2 cut(s)	71, 1018
BsnI	GGCC	5 cut(s)	335, 487, 498, 567, 825
Bso31I	GGTCTC	1 cut(s)	291
Bsp1286I	GDGCHC	2 cut(s)	178, 1023
Bsp143I	GATC	1 cut(s)	781
BspACI	CCGC	4 cut(s)	43, 273, 505, 689
BspANI	GGCC	5 cut(s)	335, 487, 498, 567, 825
BspCNI	CTCAG	2 cut(s)	372, 1000
BspFNI	CGCG	1 cut(s)	15
BspLI	GGNNCC	1 cut(s)	867
BspMAI	CTGCAG	1 cut(s)	781
BspTNI	GGTCTC	1 cut(s)	291
BsrDI	GCAATG	1 cut(s)	621
BsrFI	RCCGGY	1 cut(s)	831
BsrI	ACTGG	2 cut(s)	445, 867
BssAI	RCCGGY	1 cut(s)	831
BssECI	CCNNGG	3 cut(s)	336, 493, 970
BssMI	GATC	1 cut(s)	781
BssT1I	CCWWGG	3 cut(s)	336, 493, 970
Bst2UI	CCWGG	1 cut(s)	588
Bst4CI	ACNGT	3 cut(s)	544, 580, 922
Bst6I	CTCTTC	1 cut(s)	986
BstBAI	YACGTR	1 cut(s)	125
BstC8I	GCNNGC	2 cut(s)	13, 1042
BstDEI	CTNAG	2 cut(s)	359, 1008
BstFNI	CGCG	1 cut(s)	15
BstH2I	RGCGCY	1 cut(s)	279
BstHHI	GCGC	1 cut(s)	278
BstKTI	GATC	1 cut(s)	784
BstMAI	GTCTC	4 cut(s)	163, 291, 306, 1028
BstMBI	GATC	1 cut(s)	781
BstMWI	GCNNNNNNNGC	4 cut(s)	17, 407, 610, 655
BstNI	CCWGG	1 cut(s)	588
BstNSI	RCATGY	2 cut(s)	740, 1044
BstSCI	CCNGG	1 cut(s)	586
BstSFI	CTRYAG	2 cut(s)	106, 777
BstSLI	GKGCMC	1 cut(s)	1023
BstUI	CGCG	1 cut(s)	15
BstV1I	GCAGC	6 cut(s)	136, 158, 388, 446, 703, 763
BstV2I	GAAGAC	1 cut(s)	851
BstX2I	RGATCY	1 cut(s)	781
BstYI	RGATCY	1 cut(s)	781
BsuRI	GGCC	5 cut(s)	335, 487, 498, 567, 825
BtsIMutI	CAGTG	2 cut(s)	367, 860
Cac8I	GCNNGC	2 cut(s)	13, 1042
CaiI	CAGNNNCTG	2 cut(s)	401, 440
CfoI	GCGC	1 cut(s)	278
Cfr10I	RCCGGY	1 cut(s)	831
Cfr13I	GGNCC	2 cut(s)	823, 949
CseI	GACGC	1 cut(s)	4
Csp6I	GTAC	2 cut(s)	138, 356
CspAI	ACCGGT	1 cut(s)	831
CviAII	CATG	6 cut(s)	563, 670, 737, 878, 906, 1041
CviQI	GTAC	2 cut(s)	138, 356
DdeI	CTNAG	2 cut(s)	359, 1008
DpnI	GATC	1 cut(s)	783
DpnII	GATC	1 cut(s)	781
DrdI	GACNNNNNNGTC	1 cut(s)	32
DriI	GACNNNNNGTC	1 cut(s)	64
DseDI	GACNNNNNNGTC	1 cut(s)	32
EaeI	YGGCCR	1 cut(s)	496
Eam1104I	CTCTTC	1 cut(s)	986
Eam1105I	GACNNNNNGTC	1 cut(s)	64
EarI	CTCTTC	1 cut(s)	986
Eco130I	CCWWGG	3 cut(s)	336, 493, 970
Eco31I	GGTCTC	1 cut(s)	291
Eco47I	GGWCC	1 cut(s)	949
EcoRI	GAATTC	1 cut(s)	884
EcoRII	CCWGG	1 cut(s)	586
EcoT14I	CCWWGG	3 cut(s)	336, 493, 970
ErhI	CCWWGG	3 cut(s)	336, 493, 970
FaeI	CATG	6 cut(s)	566, 673, 740, 881, 909, 1044
FaqI	GGGAC	2 cut(s)	71, 1018
FatI	CATG	6 cut(s)	562, 669, 736, 877, 905, 1040
FblI	GTMKAC	1 cut(s)	24
Fnu4HI	GCNGC	8 cut(s)	43, 147, 150, 274, 402, 435, 692, 777
Fsp4HI	GCNGC	8 cut(s)	43, 147, 150, 274, 402, 435, 692, 777
FspBI	CTAG	2 cut(s)	141, 222
GlaI	GCGC	1 cut(s)	277
GluI	GCNGC	8 cut(s)	43, 147, 150, 274, 402, 435, 692, 777
GsaI	CCCAGC	1 cut(s)	600
GsuI	CTGGAG	1 cut(s)	462
HaeII	RGCGCY	1 cut(s)	279
HaeIII	GGCC	5 cut(s)	335, 487, 498, 567, 825
HapII	CCGG	1 cut(s)	832
HgaI	GACGC	1 cut(s)	4
HhaI	GCGC	1 cut(s)	278
Hin1II	CATG	6 cut(s)	566, 673, 740, 881, 909, 1044
Hin6I	GCGC	1 cut(s)	276
HinP1I	GCGC	1 cut(s)	276
HincII	GTYRAC	3 cut(s)	25, 97, 667
HindII	GTYRAC	3 cut(s)	25, 97, 667
HindIII	AAGCTT	2 cut(s)	89, 611
HinfI	GANTC	4 cut(s)	65, 451, 725, 911
HpaII	CCGG	1 cut(s)	832
HphI	GGTGA	2 cut(s)	431, 678
Hpy166II	GTNNAC	4 cut(s)	25, 97, 356, 667
Hpy188I	TCNGA	4 cut(s)	537, 743, 766, 799
Hpy188III	TCNNGA	4 cut(s)	56, 838, 941, 1033
Hpy8I	GTNNAC	4 cut(s)	25, 97, 356, 667
Hpy99I	CGWCG	2 cut(s)	20, 26
HpyAV	CCTTC	2 cut(s)	79, 416
HpyCH4III	ACNGT	3 cut(s)	544, 580, 922
HpyCH4IV	ACGT	2 cut(s)	33, 124
HpyCH4V	TGCA	7 cut(s)	146, 257, 404, 434, 779, 1044, 1052
HpyF10VI	GCNNNNNNNGC	4 cut(s)	17, 407, 610, 655
HpyF3I	CTNAG	2 cut(s)	359, 1008
HpySE526I	ACGT	2 cut(s)	33, 124
Hsp92II	CATG	6 cut(s)	566, 673, 740, 881, 909, 1044
HspAI	GCGC	1 cut(s)	276
Kzo9I	GATC	1 cut(s)	781
LmnI	GCTCC	3 cut(s)	170, 377, 871
LpnPI	CCDG	9 cut(s)	426, 573, 582, 590, 600, 644, 823, 845, 848
Lsp1109I	GCAGC	6 cut(s)	136, 158, 388, 446, 703, 763
LweI	GCATC	1 cut(s)	770
MaeI	CTAG	2 cut(s)	141, 222
MaeII	ACGT	2 cut(s)	33, 124
MaeIII	GTNAC	3 cut(s)	391, 574, 941
MalI	GATC	1 cut(s)	783
MboI	GATC	1 cut(s)	781
MboII	GAAGA	6 cut(s)	353, 467, 575, 856, 893, 1003
MfeI	CAATTG	1 cut(s)	818
MflI	RGATCY	1 cut(s)	781
MhlI	GDGCHC	2 cut(s)	178, 1023
MlsI	TGGCCA	1 cut(s)	498
MluCI	AATT	6 cut(s)	344, 591, 677, 818, 884, 1047
MluNI	TGGCCA	1 cut(s)	498
MlyI	GAGTC	1 cut(s)	74
MnlI	CCTC	4 cut(s)	47, 235, 534, 694
Mox20I	TGGCCA	1 cut(s)	498
MscI	TGGCCA	1 cut(s)	498
MseI	TTAA	3 cut(s)	30, 468, 810
Msp20I	TGGCCA	1 cut(s)	498
MspA1I	CMGCKG	1 cut(s)	149
MspI	CCGG	1 cut(s)	832
MspR9I	CCNGG	1 cut(s)	588
MunI	CAATTG	1 cut(s)	818
MvaI	CCWGG	1 cut(s)	588
MvnI	CGCG	1 cut(s)	15
MwoI	GCNNNNNNNGC	4 cut(s)	17, 407, 610, 655
NdeII	GATC	1 cut(s)	781
NlaIII	CATG	6 cut(s)	566, 673, 740, 881, 909, 1044
NlaIV	GGNNCC	1 cut(s)	867
NmeAIII	GCCGAG	1 cut(s)	270
NmuCI	GTSAC	1 cut(s)	941
NspI	RCATGY	2 cut(s)	740, 1044
PaeI	GCATGC	1 cut(s)	1044
PciI	ACATGT	1 cut(s)	736
PcsI	WCGNNNNNNNCGW	1 cut(s)	30
PfeI	GAWTC	3 cut(s)	451, 725, 911
PflMI	CCANNNNNTGG	1 cut(s)	331
PfoI	TCCNGGA	1 cut(s)	586
PinAI	ACCGGT	1 cut(s)	831
PkrI	GCNGC	8 cut(s)	44, 148, 151, 275, 403, 436, 693, 778
PleI	GAGTC	1 cut(s)	73
PpsI	GAGTC	1 cut(s)	73
Ppu21I	YACGTR	1 cut(s)	125
PscI	ACATGT	1 cut(s)	736
Psp6I	CCWGG	1 cut(s)	586
PspFI	CCCAGC	1 cut(s)	596
PspGI	CCWGG	1 cut(s)	586
PspN4I	GGNNCC	1 cut(s)	867
PspPI	GGNCC	2 cut(s)	823, 949
PstI	CTGCAG	1 cut(s)	781
PstNI	CAGNNNCTG	2 cut(s)	401, 440
PsuI	RGATCY	1 cut(s)	781
PvuII	CAGCTG	1 cut(s)	149
RsaI	GTAC	2 cut(s)	139, 357
RsaNI	GTAC	2 cut(s)	138, 356
SalI	GTCGAC	1 cut(s)	23
SaqAI	TTAA	3 cut(s)	30, 468, 810
SatI	GCNGC	8 cut(s)	43, 147, 150, 274, 402, 435, 692, 777
Sau3AI	GATC	1 cut(s)	781
Sau96I	GGNCC	2 cut(s)	823, 949
SchI	GAGTC	1 cut(s)	74
ScrFI	CCNGG	1 cut(s)	588
SduI	GDGCHC	2 cut(s)	178, 1023
SfaNI	GCATC	1 cut(s)	770
SfcI	CTRYAG	2 cut(s)	106, 777
SinI	GGWCC	1 cut(s)	949
SmlI	CTYRAG	1 cut(s)	160
SmoI	CTYRAG	1 cut(s)	160
SpeI	ACTAGT	1 cut(s)	140
SphI	GCATGC	1 cut(s)	1044
Sse9I	AATT	6 cut(s)	344, 591, 677, 818, 884, 1047
SsiI	CCGC	4 cut(s)	43, 273, 505, 689
SspI	AATATT	1 cut(s)	373
SspMI	CTAG	2 cut(s)	141, 222
StyD4I	CCNGG	1 cut(s)	586
StyI	CCWWGG	3 cut(s)	336, 493, 970
TaaI	ACNGT	3 cut(s)	544, 580, 922
TaiI	ACGT	2 cut(s)	36, 127
TaqI	TCGA	3 cut(s)	24, 318, 1032
TaqII	GACCGA	1 cut(s)	966
TasI	AATT	6 cut(s)	344, 591, 677, 818, 884, 1047
TatI	WGTACW	2 cut(s)	137, 355
TauI	GCSGC	2 cut(s)	45, 276
TfiI	GAWTC	3 cut(s)	451, 725, 911
Tru1I	TTAA	3 cut(s)	30, 468, 810
Tru9I	TTAA	3 cut(s)	30, 468, 810
TscAI	CASTG	2 cut(s)	367, 867
TseFI	GTSAC	1 cut(s)	941
TseI	GCWGC	6 cut(s)	146, 149, 401, 434, 691, 776
Tsp45I	GTSAC	1 cut(s)	941
TspDTI	ATGAA	5 cut(s)	61, 505, 732, 894, 903
TspRI	CASTG	2 cut(s)	367, 867
Van91I	CCANNNNNTGG	1 cut(s)	331
VpaK11BI	GGWCC	1 cut(s)	949
XapI	RAATTY	3 cut(s)	344, 677, 884
XceI	RCATGY	2 cut(s)	740, 1044
XcmI	CCANNNNNNNNNTGG	1 cut(s)	189
XmiI	GTMKAC	1 cut(s)	24
XspI	CTAG	2 cut(s)	141, 222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.