Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0000936

Physical Location & Seq

Genomic Coordinates Forward (+)

27312875 .. 27318416

Gene Structure 5542 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g24400.12

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2310 bp

ATGGTCGATCTGGTTTCTCTCTCACTTCAATTGCTGCCACCCAGTTGTCTACTTCATCTCTCTCATTTATCTCTACCTGGTAATGTTCATGAGCGGTATGTTGTGAGGTTGCAGAAGAAATTACGATTTGAGGAAAGAAAACAGGCCAATCAGAGAAGGGTACTTTCTGATTCTGAGACGGTACGGTGGTTGAACCATGCAGTTGAAAAGATATGGCCTATATGTATGGAACAGATTGCTTCACAGAAAGTTCTCCTCCCTATCATACCTTGGTTTATGGAGAAGTACAAACCGTGGACTGTTGGTAAAGCTGTAGTACAGCATCTGTACTTGGGAAGAAACCCACCTATGTTCACAGAGATGAGAGTTCTTCGCCAATCTACTGATGATGACCACTTGGTTTTGGAGTTGGGGATGAATTTTCTGACAGCTGATGATATGCTTGGAATTCTAGCTGTGAAACTGTGGAAAACACTAGGTTTCGGAATCTGGACGAAGTTGCATATTACAGGCATGCATGTTGAAGGGAAGGTCCTGATTGGGGTGAAGTTCCTTCGAAAGTGGCCTTTCCTAGGCCGTGTGCGGTTATGCTTCGTTGAGCCTCCATATTTTCAAATGACCGTCAAGCCTATTTTCACCCGCGGGCTTGATGTTACAGAAGTCCCTGGGATTGATGGATGGCTGGATAAGCTTCTCGCTGTTGCCTTTGAGCAGACACTTGTTCAGCCTAATATGCTAGTTGTTGACATGGAGAAATTTACTTCACCAGAACAGGAAAGTTGGTTCACTGTGGATGAGAAGGATCCTGTTCCTTTTGTGAGAATAGAAGTTATTGAAGCATCTGACATGAAAGCCTCCGATCTTAATGGATTCGCTGACCCTTATGTGAAGGGTCGTTTGGGTGTTTACCAATTCAAAACTAAGATACAAAAGAAAACGCTGACTCCAAAATGGCACGAGGAATTTAAGATCCCCATTATCACATGGGATTCACCAAATGTGCTAGCTATTGAAGTTAATGACAAGGACATATTTGTTGATGATACTCTTGGAGACTGTTCCATTAACATCAGCAATCTTAGGGATGGCGGGAGGCATGACATGTGGTTGCCTCTTCAGAACATCAAAACGGCTGGGAGGCTGCATGTTGCAGTAACCGTACTATACGAAAATGAGAAGGAAGAGAAAAATCTTCAAAGGTTTGACTTGAGCCACTTTCTTACACAGGGAGATGACGGTCCAGATGTTCAGGAAAAGCCGGATGTGGAAGAACAAAGAAATTCCTTTGTCAGTGACACTGGTAATAAAGGTTCCTTCTCATCTGTATCGTTGGGGAAATCTCCTAAGGTAGCAGATCATTTTGAGCCCATTGATGTTGATGGGCAGAAAGAGACCGGTATATGGGTTCATCACCCAGGAAACGAAGTTTCCCAAACTTGGGAGGCTAGAAAAGGAAAGGGTCGACGACTTAATACCCAAGTTCAAGGGGAGCCTAATGGTAGTGGCCTTGGATCCCAAGTTAATGATAGCAGCAGCACTGATGAGAATCCTGAAGATAAACATCGAATGCCATCAGTTCGCAGGGGTCTGCATATGATCAGTTCGGTGTTCCATAGGAATTCCAAGAAGGAGGATAATTCATGCAGCTTTAAAGAGCCACTCGAAACCCCACGTGTGAATCTAAGGGCAGTTAATGAAAAAGATATTGGTGTGAGTAATGAAGAAGATATTGGTGTGCGACTTGTTATGGATGACGGCCTTTGTAGCCCTCTTTCTGGCAAGGCAAATTCAAAAGGAGGGCCGTTAAGTTCTGGAGAGAGTGGTTCGGATAGCCCAGGAAAGGGCAAGGTGAAAGACATGGCAAAGAATCTCTACAAAAGCGCTGAAAGGTCGGTAAAGCATGCACTTTCACGGAAAGGTTCTAGAAAGTCTCAAGCTGATTCCCGCACAGTGAGTGAAAGAGAAATTTTAGCAGATTCCATCTCTTCCGATGATGATTCTCTTCCGTCCCCATTTGTTGAAACGATACCAGTTGCCTCCAAGGCTATACCTCGTAGCTCCGATATTGATTCAGGTATAGCAGAGAAGCCCGTGGTTCAGCCGGTAATTGACACTGCAGTGGATGCTGAAGTCCCAGCAAATAGGGTTGAACTTGGAGAACTCGAAAAAGTGGATGAGGAGCTGAACAGCCCTGGAAGAAGTAGCGATGAATTGTCCGAGCCGTCAAAAGTTGAAGCTAGCTTATGGCGTGCATGTCCAGGCCACATAATGGACGTTCTTGTGAAACACTCGGCCGAACAAATGCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005886 GO:0012505 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00290 ko00650 ko00660 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00290 map00650 map00660 map00770 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

C2 SMP_LBD

Protein Analysis

770

Amino Acids

86.19

Weight (kDa)

5.85

Isoelectric Point (pI)

41.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000936)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53590 AT3G14590 AT3G14590 AT3G14590 AT3G14590 AT3G14590
fragaria_vesca	FvH4_3g16980 FvH4_3g16980 FvH4_3g16980 FvH4_3g16980 FvH4_3g16980 FvH4_3g17020 FvH4_3g17020 FvH4_3g17020 FvH4_3g17020 FvH4_3g17020 FvH4_3g17020
malus_domestica	MD00G1185500.v1.1 MD00G1185600.v1.1 MD03G1254200.v1.1 MD03G1254900.v1.1 MD11G1275800.v1.1 MD11G1276000.v1.1
prunus_persica	Prupe.4G152200_v2.0.a1 Prupe.4G152200_v2.0.a1 Prupe.4G152300_v2.0.a1 Prupe.4G152300_v2.0.a1 Prupe.4G152300_v2.0.a1 Prupe.4G152300_v2.0.a1 Prupe.4G152300_v2.0.a1 Prupe.4G152300_v2.0.a1 Prupe.4G152300_v2.0.a1
pyrus_communis	pycom03g20170 pycom03g20190 pycom11g24400
rosa_chinensis	RchiOBHm_Chr2g0135571 RchiOBHm_Chr2g0159501 RchiOBHm_Chr2g0159511 RchiOBHm_Chr5g0028301 RchiOBHm_Chr5g0028351 RchiOBHm_Chr5g0039631
rosa_laevigata	RLG00000033080 RLG00000033088
rosa_multiflora	Rmu_sc0001020.1_g000001 Rmu_sc0002481.1_g000040 Rmu_sc0008526.1_g000010
rosa_roxburghii	Rroxscaffold_1G00051350 Rroxscaffold_1G00051420 Rroxscaffold_1G00051430
rosa_rugosa	Rorug05G0105600
rosa_samantha	Rh1AG292900 Rh4AG059100 Rh5AG199100 Rh5AG199600 Rh5BG197700 Rh5BG198100 Rh5CG217400 Rh5CG218100 Rh5DG199400 Rh5DG200000 Rh7DG370100
rosa_wichuraiana	Rw4G016870 Rw5G018160 Rw5G018190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	2269
AccBSI	CCGCTC	1 cut(s)	94
AccI	GTMKAC	2 cut(s)	49, 1462
AccII	CGCG	1 cut(s)	642
AciI	CCGC	6 cut(s)	94, 583, 640, 642, 1089, 1945
AclWI	GGATC	5 cut(s)	797, 810, 964, 1506, 1519
AcoI	YGGCCR	1 cut(s)	2292
AcsI	RAATTY	8 cut(s)	418, 447, 755, 962, 1279, 1618, 1786, 1965
AcuI	CTGAAG	3 cut(s)	1100, 1572, 2148
AcvI	CACGTG	1 cut(s)	1673
AfaI	GTAC	6 cut(s)	162, 183, 287, 318, 329, 1161
AfeI	AGCGCT	1 cut(s)	1882
AfiI	CCNNNNNNNGG	9 cut(s)	541, 572, 1401, 1437, 1438, 1775, 1840, 1841, 2269
AflIII	ACRYGT	2 cut(s)	1101, 1672
AgeI	ACCGGT	1 cut(s)	1394
AjnI	CCWGG	6 cut(s)	76, 664, 1414, 1834, 2191, 2257
AjuI	GAANNNNNNNTTGG	6 cut(s)	881, 913, 1689, 1713, 1721, 1745
AleI	CACNNNNGTG	1 cut(s)	2117
AloI	GAACNNNNNNTCC	2 cut(s)	767, 799
Alw26I	GTCTC	4 cut(s)	170, 1047, 1385, 1935
AlwI	GGATC	5 cut(s)	797, 810, 964, 1506, 1519
AlwNI	CAGNNNCTG	1 cut(s)	325
Aor51HI	AGCGCT	1 cut(s)	1882
AoxI	GGCC	9 cut(s)	144, 215, 563, 574, 1504, 1756, 1799, 2260, 2292
ApeKI	GCWGC	5 cut(s)	34, 1141, 1530, 1533, 1644
ApoI	RAATTY	8 cut(s)	418, 447, 755, 962, 1279, 1618, 1786, 1965
AsiGI	ACCGGT	1 cut(s)	1394
AspA2I	CCTAGG	1 cut(s)	571
AspLEI	GCGC	1 cut(s)	1883
AspS9I	GGNCC	3 cut(s)	532, 1238, 1799
AsuHPI	GGTGA	6 cut(s)	556, 628, 756, 984, 1403, 1861
AsuII	TTCGAA	1 cut(s)	556
AsuNHI	GCTAGC	2 cut(s)	1003, 2237
AvaII	GGWCC	2 cut(s)	532, 1238
AvrII	CCTAGG	1 cut(s)	571
AxyI	CCTNAGG	1 cut(s)	1344
BaeI	ACNNNNGTAYC	2 cut(s)	173, 206
BamHI	GGATCC	2 cut(s)	802, 1511
BanII	GRGCYC	1 cut(s)	1368
BauI	CACGAG	1 cut(s)	956
BbrPI	CACGTG	1 cut(s)	1673
BbvI	GCAGC	5 cut(s)	21, 1128, 1542, 1545, 1656
BccI	CCATC	6 cut(s)	668, 672, 1079, 1373, 1579, 1988
BceAI	ACGGC	5 cut(s)	561, 1146, 1771, 1786, 2206
BciT130I	CCWGG	6 cut(s)	78, 666, 1416, 1836, 2193, 2259
BclI	TGATCA	1 cut(s)	1596
BcoDI	GTCTC	4 cut(s)	170, 1047, 1385, 1935
BfaI	CTAG	8 cut(s)	452, 476, 572, 737, 1004, 1446, 1923, 2238
BfmI	CTRYAG	2 cut(s)	312, 2115
BfoI	RGCGCY	1 cut(s)	1884
BglI	GCCNNNNNGGC	1 cut(s)	2042
BisI	GCNGC	5 cut(s)	35, 1142, 1531, 1534, 1645
BlnI	CCTAGG	1 cut(s)	571
BlsI	GCNGC	5 cut(s)	36, 1143, 1532, 1535, 1646
Bme1390I	CCNGG	6 cut(s)	78, 666, 1416, 1836, 2193, 2259
Bme18I	GGWCC	2 cut(s)	532, 1238
BmgT120I	GGNCC	3 cut(s)	532, 1238, 1799
BmiI	GGNNCC	4 cut(s)	804, 1312, 1491, 1513
BmrFI	CCNGG	6 cut(s)	78, 666, 1416, 1836, 2193, 2259
BmrI	ACTGGG	1 cut(s)	36
BmsI	GCATC	3 cut(s)	331, 848, 2113
BmtI	GCTAGC	2 cut(s)	1007, 2241
BmuI	ACTGGG	1 cut(s)	36
BpmI	CTGGAG	1 cut(s)	1833
Bpu14I	TTCGAA	1 cut(s)	556
BpuEI	CTTGAG	2 cut(s)	1228, 1917
BsaAI	YACGTR	1 cut(s)	1673
BsaBI	GATNNNNATC	2 cut(s)	1545, 1560
BsaI	GGTCTC	1 cut(s)	1385
BsaWI	WCCGGW	1 cut(s)	1394
BsaXI	ACNNNNNCTCC	2 cut(s)	928, 958
Bsc4I	CCNNNNNNNGG	9 cut(s)	541, 572, 1401, 1437, 1438, 1775, 1840, 1841, 2269
Bse118I	RCCGGY	2 cut(s)	1394, 2101
Bse1I	ACTGG	3 cut(s)	42, 1303, 2030
Bse21I	CCTNAGG	1 cut(s)	1344
Bse8I	GATNNNNATC	2 cut(s)	1545, 1560
BseBI	CCWGG	6 cut(s)	78, 666, 1416, 1836, 2193, 2259
BseGI	GGATG	8 cut(s)	420, 683, 799, 1090, 1267, 1756, 2128, 2179
BseJI	GATNNNNATC	2 cut(s)	1545, 1560
BseLI	CCNNNNNNNGG	9 cut(s)	541, 572, 1401, 1437, 1438, 1775, 1840, 1841, 2269
BseMII	CTCAG	1 cut(s)	165
BseNI	ACTGG	3 cut(s)	42, 1303, 2030
BseRI	GAGGAG	2 cut(s)	245, 2192
BseX3I	CGGCCG	1 cut(s)	2292
BseXI	GCAGC	5 cut(s)	21, 1128, 1542, 1545, 1656
BseYI	CCCAGC	2 cut(s)	1133, 2134
Bsh1236I	CGCG	1 cut(s)	642
Bsh1285I	CGRYCG	1 cut(s)	2295
BshFI	GGCC	9 cut(s)	146, 217, 565, 576, 1506, 1758, 1801, 2262, 2294
BshTI	ACCGGT	1 cut(s)	1394
BsiEI	CGRYCG	1 cut(s)	2295
BsiSI	CCGG	3 cut(s)	1259, 1395, 2102
BslFI	GGGAC	3 cut(s)	647, 1993, 2117
BslI	CCNNNNNNNGG	9 cut(s)	541, 572, 1401, 1437, 1438, 1775, 1840, 1841, 2269
BsmAI	GTCTC	4 cut(s)	170, 1047, 1385, 1935
BsmBI	CGTCTC	1 cut(s)	170
BsmFI	GGGAC	3 cut(s)	647, 1993, 2117
BsmI	GAATGC	1 cut(s)	1572
BsnI	GGCC	9 cut(s)	146, 217, 565, 576, 1506, 1758, 1801, 2262, 2294
Bso31I	GGTCTC	1 cut(s)	1385
Bsp119I	TTCGAA	1 cut(s)	556
Bsp1286I	GDGCHC	1 cut(s)	1368
Bsp143I	GATC	7 cut(s)	7, 802, 859, 969, 1354, 1511, 1596
BspACI	CCGC	6 cut(s)	94, 583, 640, 642, 1089, 1945
BspANI	GGCC	9 cut(s)	146, 217, 565, 576, 1506, 1758, 1801, 2262, 2294
BspCNI	CTCAG	1 cut(s)	166
BspFNI	CGCG	1 cut(s)	642
BspHI	TCATGA	1 cut(s)	88
BspLI	GGNNCC	4 cut(s)	804, 1312, 1491, 1513
BspMAI	CTGCAG	1 cut(s)	2119
BspOI	GCTAGC	2 cut(s)	1007, 2241
BspPI	GGATC	5 cut(s)	797, 810, 964, 1506, 1519
BspT104I	TTCGAA	1 cut(s)	556
BspTNI	GGTCTC	1 cut(s)	1385
BsrBI	CCGCTC	1 cut(s)	94
BsrFI	RCCGGY	2 cut(s)	1394, 2101
BsrI	ACTGG	3 cut(s)	42, 1303, 2030
BssAI	RCCGGY	2 cut(s)	1394, 2101
BssMI	GATC	7 cut(s)	7, 802, 859, 969, 1354, 1511, 1596
BssSI	CACGAG	1 cut(s)	956
BssT1I	CCWWGG	4 cut(s)	269, 571, 1507, 2040
Bst2BI	CACGAG	1 cut(s)	956
Bst2UI	CCWGG	6 cut(s)	78, 666, 1416, 1836, 2193, 2259
Bst6I	CTCTTC	4 cut(s)	1119, 1176, 1990, 2007
BstAPI	GCANNNNNTGC	1 cut(s)	2123
BstBAI	YACGTR	1 cut(s)	1673
BstBI	TTCGAA	1 cut(s)	556
BstC8I	GCNNGC	6 cut(s)	515, 644, 1005, 1902, 2239, 2250
BstDEI	CTNAG	5 cut(s)	174, 921, 1079, 1344, 1682
BstDSI	CCRYGG	3 cut(s)	293, 640, 2091
BstENI	CCTNNNNNAGG	1 cut(s)	570
BstF5I	GGATG	8 cut(s)	420, 683, 799, 1090, 1267, 1756, 2128, 2179
BstFNI	CGCG	1 cut(s)	642
BstH2I	RGCGCY	1 cut(s)	1884
BstHHI	GCGC	1 cut(s)	1883
BstKTI	GATC	7 cut(s)	10, 805, 862, 972, 1357, 1514, 1599
BstMAI	GTCTC	4 cut(s)	170, 1047, 1385, 1935
BstMBI	GATC	7 cut(s)	7, 802, 859, 969, 1354, 1511, 1596
BstMCI	CGRYCG	1 cut(s)	2295
BstMWI	GCNNNNNNNGC	5 cut(s)	688, 733, 1764, 2042, 2123
BstNI	CCWGG	6 cut(s)	78, 666, 1416, 1836, 2193, 2259
BstNSI	RCATGY	6 cut(s)	517, 521, 1105, 1148, 1904, 2256
BstSCI	CCNGG	6 cut(s)	76, 664, 1414, 1834, 2191, 2257
BstSFI	CTRYAG	2 cut(s)	312, 2115
BstUI	CGCG	1 cut(s)	642
BstV1I	GCAGC	5 cut(s)	21, 1128, 1542, 1545, 1656
BstX2I	RGATCY	3 cut(s)	802, 969, 1511
BstYI	RGATCY	3 cut(s)	802, 969, 1511
BstZI	CGGCCG	1 cut(s)	2292
Bsu36I	CCTNAGG	1 cut(s)	1344
BsuRI	GGCC	9 cut(s)	146, 217, 565, 576, 1506, 1758, 1801, 2262, 2294
BtgI	CCRYGG	3 cut(s)	293, 640, 2091
BtgZI	GCGATG	1 cut(s)	2220
BtsCI	GGATG	8 cut(s)	420, 683, 799, 1090, 1267, 1756, 2128, 2179
BtsI	GCAGTG	2 cut(s)	2112, 2124
BtsIMutI	CAGTG	7 cut(s)	786, 1296, 1297, 1536, 1956, 2112, 2124
Cac8I	GCNNGC	6 cut(s)	515, 644, 1005, 1902, 2239, 2250
CaiI	CAGNNNCTG	1 cut(s)	325
CciI	TCATGA	1 cut(s)	88
CfoI	GCGC	1 cut(s)	1883
Cfr10I	RCCGGY	2 cut(s)	1394, 2101
Cfr13I	GGNCC	3 cut(s)	532, 1238, 1799
Cfr42I	CCGCGG	1 cut(s)	643
CsiI	ACCWGGT	1 cut(s)	76
Csp6I	GTAC	6 cut(s)	161, 182, 286, 317, 328, 1160
CspAI	ACCGGT	1 cut(s)	1394
CviQI	GTAC	6 cut(s)	161, 182, 286, 317, 328, 1160
DdeI	CTNAG	5 cut(s)	174, 921, 1079, 1344, 1682
DpnI	GATC	7 cut(s)	9, 804, 861, 971, 1356, 1513, 1598
DpnII	GATC	7 cut(s)	7, 802, 859, 969, 1354, 1511, 1596
DraI	TTTAAA	1 cut(s)	1651
EaeI	YGGCCR	1 cut(s)	2292
EagI	CGGCCG	1 cut(s)	2292
Eam1104I	CTCTTC	4 cut(s)	1119, 1176, 1990, 2007
EarI	CTCTTC	4 cut(s)	1119, 1176, 1990, 2007
EclXI	CGGCCG	1 cut(s)	2292
Eco130I	CCWWGG	4 cut(s)	269, 571, 1507, 2040
Eco24I	GRGCYC	1 cut(s)	1368
Eco31I	GGTCTC	1 cut(s)	1385
Eco47I	GGWCC	2 cut(s)	532, 1238
Eco47III	AGCGCT	1 cut(s)	1882
Eco52I	CGGCCG	1 cut(s)	2292
Eco57I	CTGAAG	3 cut(s)	1100, 1572, 2148
Eco72I	CACGTG	1 cut(s)	1673
Eco81I	CCTNAGG	1 cut(s)	1344
EcoNI	CCTNNNNNAGG	1 cut(s)	570
EcoO109I	RGGNCCY	1 cut(s)	532
EcoRI	GAATTC	2 cut(s)	447, 1618
EcoRII	CCWGG	6 cut(s)	76, 664, 1414, 1834, 2191, 2257
EcoT14I	CCWWGG	4 cut(s)	269, 571, 1507, 2040
EcoT22I	ATGCAT	1 cut(s)	519
EcoT38I	GRGCYC	1 cut(s)	1368
ErhI	CCWWGG	4 cut(s)	269, 571, 1507, 2040
Esp3I	CGTCTC	1 cut(s)	170
FaqI	GGGAC	3 cut(s)	647, 1993, 2117
FauI	CCCGC	4 cut(s)	635, 647, 1082, 1952
FauNDI	CATATG	1 cut(s)	1593
FbaI	TGATCA	1 cut(s)	1596
FblI	GTMKAC	2 cut(s)	49, 1462
Fnu4HI	GCNGC	5 cut(s)	35, 1142, 1531, 1534, 1645
FokI	GGATG	8 cut(s)	427, 690, 806, 1097, 1274, 1763, 2135, 2186
FriOI	GRGCYC	1 cut(s)	1368
Fsp4HI	GCNGC	5 cut(s)	35, 1142, 1531, 1534, 1645
FspBI	CTAG	8 cut(s)	452, 476, 572, 737, 1004, 1446, 1923, 2238
GlaI	GCGC	1 cut(s)	1882
GluI	GCNGC	5 cut(s)	35, 1142, 1531, 1534, 1645
GsaI	CCCAGC	2 cut(s)	1137, 2138
GsuI	CTGGAG	1 cut(s)	1833
HaeII	RGCGCY	1 cut(s)	1884
HaeIII	GGCC	9 cut(s)	146, 217, 565, 576, 1506, 1758, 1801, 2262, 2294
HapII	CCGG	3 cut(s)	1259, 1395, 2102
HhaI	GCGC	1 cut(s)	1883
Hin6I	GCGC	1 cut(s)	1881
HinP1I	GCGC	1 cut(s)	1881
HincII	GTYRAC	2 cut(s)	745, 1463
HindII	GTYRAC	2 cut(s)	745, 1463
HindIII	AAGCTT	1 cut(s)	689
HpaII	CCGG	3 cut(s)	1259, 1395, 2102
HphI	GGTGA	6 cut(s)	556, 628, 756, 984, 1403, 1861
Hpy166II	GTNNAC	7 cut(s)	50, 297, 354, 745, 786, 907, 1463
Hpy188III	TCNNGA	8 cut(s)	89, 490, 535, 1241, 1250, 1550, 1812, 1923
Hpy8I	GTNNAC	7 cut(s)	50, 297, 354, 745, 786, 907, 1463
Hpy99I	CGWCG	1 cut(s)	1467
HpyAV	CCTTC	9 cut(s)	150, 518, 523, 563, 793, 883, 1171, 1324, 1621
HpyCH4IV	ACGT	2 cut(s)	1672, 2274
HpyF10VI	GCNNNNNNNGC	5 cut(s)	688, 733, 1764, 2042, 2123
HpyF3I	CTNAG	5 cut(s)	174, 921, 1079, 1344, 1682
HpySE526I	ACGT	2 cut(s)	1672, 2274
HspAI	GCGC	1 cut(s)	1881
Ksp22I	TGATCA	1 cut(s)	1596
KspI	CCGCGG	1 cut(s)	643
Kzo9I	GATC	7 cut(s)	7, 802, 859, 969, 1354, 1511, 1596
LmnI	GCTCC	3 cut(s)	1489, 2063, 2179
Lsp1109I	GCAGC	5 cut(s)	21, 1128, 1542, 1545, 1656
LweI	GCATC	3 cut(s)	331, 848, 2113
MabI	ACCWGGT	1 cut(s)	76
MaeI	CTAG	8 cut(s)	452, 476, 572, 737, 1004, 1446, 1923, 2238
MaeII	ACGT	2 cut(s)	1672, 2274
MaeIII	GTNAC	3 cut(s)	652, 1153, 1292
MalI	GATC	7 cut(s)	9, 804, 861, 971, 1356, 1513, 1598
MbiI	CCGCTC	1 cut(s)	94
MboI	GATC	7 cut(s)	7, 802, 859, 969, 1354, 1511, 1596
MfeI	CAATTG	1 cut(s)	29
MflI	RGATCY	3 cut(s)	802, 969, 1511
MhlI	GDGCHC	1 cut(s)	1368
MlyI	GAGTC	1 cut(s)	937
Mph1103I	ATGCAT	1 cut(s)	519
MseI	TTAA	9 cut(s)	864, 966, 1017, 1065, 1470, 1521, 1650, 1692, 1805
MslI	CAYNNNNRTG	2 cut(s)	359, 2117
MspA1I	CMGCKG	2 cut(s)	431, 642
MspI	CCGG	3 cut(s)	1259, 1395, 2102
MspR9I	CCNGG	6 cut(s)	78, 666, 1416, 1836, 2193, 2259
MunI	CAATTG	1 cut(s)	29
Mva1269I	GAATGC	1 cut(s)	1572
MvaI	CCWGG	6 cut(s)	78, 666, 1416, 1836, 2193, 2259
MvnI	CGCG	1 cut(s)	642
MwoI	GCNNNNNNNGC	5 cut(s)	688, 733, 1764, 2042, 2123
NdeI	CATATG	1 cut(s)	1593
NdeII	GATC	7 cut(s)	7, 802, 859, 969, 1354, 1511, 1596
NheI	GCTAGC	2 cut(s)	1003, 2237
NlaIV	GGNNCC	4 cut(s)	804, 1312, 1491, 1513
NmeAIII	GCCGAG	1 cut(s)	2270
NmuCI	GTSAC	1 cut(s)	1292
NsiI	ATGCAT	1 cut(s)	519
NspI	RCATGY	6 cut(s)	517, 521, 1105, 1148, 1904, 2256
NspV	TTCGAA	1 cut(s)	556
OliI	CACNNNNGTG	1 cut(s)	2117
PaeI	GCATGC	2 cut(s)	517, 1904
PagI	TCATGA	1 cut(s)	88
PasI	CCCWGGG	1 cut(s)	665
PciI	ACATGT	1 cut(s)	1101
PctI	GAATGC	1 cut(s)	1572
PflMI	CCANNNNNTGG	1 cut(s)	2269
PinAI	ACCGGT	1 cut(s)	1394
PkrI	GCNGC	5 cut(s)	36, 1143, 1532, 1535, 1646
PleI	GAGTC	1 cut(s)	937
PmaCI	CACGTG	1 cut(s)	1673
PmlI	CACGTG	1 cut(s)	1673
PpsI	GAGTC	1 cut(s)	937
Ppu21I	YACGTR	1 cut(s)	1673
PpuMI	RGGWCCY	1 cut(s)	532
PscI	ACATGT	1 cut(s)	1101
Psp5II	RGGWCCY	1 cut(s)	532
Psp6I	CCWGG	6 cut(s)	76, 664, 1414, 1834, 2191, 2257
PspCI	CACGTG	1 cut(s)	1673
PspFI	CCCAGC	2 cut(s)	1133, 2134
PspGI	CCWGG	6 cut(s)	76, 664, 1414, 1834, 2191, 2257
PspN4I	GGNNCC	4 cut(s)	804, 1312, 1491, 1513
PspPI	GGNCC	3 cut(s)	532, 1238, 1799
PspPPI	RGGWCCY	1 cut(s)	532
PsrI	GAACNNNNNNTAC	2 cut(s)	1294, 1326
PstI	CTGCAG	1 cut(s)	2119
PstNI	CAGNNNCTG	1 cut(s)	325
PsuI	RGATCY	3 cut(s)	802, 969, 1511
PvuII	CAGCTG	1 cut(s)	431
RsaI	GTAC	6 cut(s)	162, 183, 287, 318, 329, 1161
RsaNI	GTAC	6 cut(s)	161, 182, 286, 317, 328, 1160
RseI	CAYNNNNRTG	2 cut(s)	359, 2117
SacII	CCGCGG	1 cut(s)	643
SalI	GTCGAC	1 cut(s)	1461
SaqAI	TTAA	9 cut(s)	864, 966, 1017, 1065, 1470, 1521, 1650, 1692, 1805
SatI	GCNGC	5 cut(s)	35, 1142, 1531, 1534, 1645
Sau3AI	GATC	7 cut(s)	7, 802, 859, 969, 1354, 1511, 1596
Sau96I	GGNCC	3 cut(s)	532, 1238, 1799
SchI	GAGTC	1 cut(s)	937
ScrFI	CCNGG	6 cut(s)	78, 666, 1416, 1836, 2193, 2259
SduI	GDGCHC	1 cut(s)	1368
SexAI	ACCWGGT	1 cut(s)	76
SfaNI	GCATC	3 cut(s)	331, 848, 2113
SfcI	CTRYAG	2 cut(s)	312, 2115
Sfr303I	CCGCGG	1 cut(s)	643
SfuI	TTCGAA	1 cut(s)	556
SgrBI	CCGCGG	1 cut(s)	643
SinI	GGWCC	2 cut(s)	532, 1238
SmiMI	CAYNNNNRTG	2 cut(s)	359, 2117
SmlI	CTYRAG	2 cut(s)	1207, 1932
SmoI	CTYRAG	2 cut(s)	1207, 1932
SphI	GCATGC	2 cut(s)	517, 1904
SsiI	CCGC	6 cut(s)	94, 583, 640, 642, 1089, 1945
SspMI	CTAG	8 cut(s)	452, 476, 572, 737, 1004, 1446, 1923, 2238
StyD4I	CCNGG	6 cut(s)	76, 664, 1414, 1834, 2191, 2257
StyI	CCWWGG	4 cut(s)	269, 571, 1507, 2040
TaiI	ACGT	2 cut(s)	1675, 2277
TaqI	TCGA	6 cut(s)	6, 556, 1462, 1564, 1662, 2163
TatI	WGTACW	3 cut(s)	285, 316, 327
Tru1I	TTAA	9 cut(s)	864, 966, 1017, 1065, 1470, 1521, 1650, 1692, 1805
Tru9I	TTAA	9 cut(s)	864, 966, 1017, 1065, 1470, 1521, 1650, 1692, 1805
TscAI	CASTG	7 cut(s)	793, 1297, 1303, 1543, 1956, 2119, 2124
TseFI	GTSAC	1 cut(s)	1292
TseI	GCWGC	5 cut(s)	34, 1141, 1530, 1533, 1644
Tsp45I	GTSAC	1 cut(s)	1292
TspDTI	ATGAA	9 cut(s)	44, 77, 431, 863, 1397, 1629, 1710, 1734, 2223
TspGWI	ACGGA	2 cut(s)	1927, 1995
TspRI	CASTG	7 cut(s)	793, 1297, 1303, 1543, 1956, 2119, 2124
Van91I	CCANNNNNTGG	1 cut(s)	2269
VpaK11BI	GGWCC	2 cut(s)	532, 1238
XagI	CCTNNNNNAGG	1 cut(s)	570
XapI	RAATTY	8 cut(s)	418, 447, 755, 962, 1279, 1618, 1786, 1965
XbaI	TCTAGA	1 cut(s)	1922
XceI	RCATGY	6 cut(s)	517, 521, 1105, 1148, 1904, 2256
XmaJI	CCTAGG	1 cut(s)	571
XmiI	GTMKAC	2 cut(s)	49, 1462
XspI	CTAG	8 cut(s)	452, 476, 572, 737, 1004, 1446, 1923, 2238
Zsp2I	ATGCAT	1 cut(s)	519

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.