Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0000936

Physical Location & Seq

Genomic Coordinates Forward (+)

39289197 .. 39295165

Gene Structure 5969 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1275800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2166 bp

ATGGATGTAACAGAAGTTACTTTAATACACCATGTGGGGATTGTGTTAATGGTGATCTGGTTTCTCTCTCACTTCAATTGCTGCCACCCAGTTGTCTACTTCATCTCTCTCATTTATCTCTACCTGGTTCATGAGCGGTATGTTATGAGGTTGCAGAAGAAATTACGATTTGAGGAAAGAAAACAGGCTAATCAGAGAAGGGTACTTTCCGATTCTGAGACAGTACGGTGGTTGAACCATGCAGTTGAAAAGATATGGCCTATATGTATGGAACAAATTGCTTCACAGAAAGTTCTCCTCCCTATCATACCTTGGTTTATGGAGAAGTACAAACCGTGGACTGTTGGTAAAGCTGTGGTACAGCATCTGTACTTGGGAAGAAACCCACCTATGTTCACAGAGATGAGAGTTCTTCGCCAATCTACTGATGATGACCACTTGGTTTTGGAGTTGGGGATGAATTTTCTGACAGCTGATGATATGCTTGGAATTCTAGCTGTGAAACTGAGGAAAACACTAGGTTTCGGAATCTGGACGAAGTTGCATATTACAGGCATGCATGTTGAAGGGAAGGTCCTGATTGGGGTGAAGTTCCTTCGAAAGTGGCCTTTCCTAGGCCGTGTGCGGTTATGCTTCGTTGAGCCTCCATATTTCCAAATGATCGTCAAGCCTATTTTCACCCGCGGGCTTGATGTTACAGAAGTCCCTGGGATTGATGGATGGCTGGATAAGCTTCTCGCTGTTGCCTTTGAGCAGACACTTGTTCAGCCTAATATGCTAGTTGTTGACATGGAGAAATTTACTTCACCGGAACAGGAAAGTTGGTTCACTGTGGATGAGAAGGATCCTGTTGCTTTTGTGAGAATAGAAGTTATCGAAGCATCTGACATGAAAGCCTCCGATCTTAATGGATTCGCTGACCCTTATGTGAAGGGTCGTTTGGGTGTTTACCAATTCAAAACTAAGATACAAAAGAAAACGCTGACTCCAAAATGGCACGAGGAATTTAAGATCCCCATTATCACATGGGATTCACCAAATGTGCTAGCTATTGAAGTTAATGACAAGGACATATTTGTTGATGATACCCTTGGAGATTGTTCCATTAACATCAGCAATCTTAGGGATGGCGGGAGGCATGACATGTGGTTGCCTCTTCAGAACATTAAAACGGCTGGGAGGCTGCATGTTGCAGTAACCGTACTAGACGAAAATGAGAAGGGAGATGACAGTCCAGATTTTCAGGAAAAGCCAGATGTGGAAGAACAAAGAAATTCCTTTGTCAGTGACACTGGTAATAAAGGTTCCTTCTCATCTGTATCGTTGGGGAAATCTCCTAAGGTAGCAGATCATTTTGAGCCCATTGATGTTGATGGGCAGAAAGATACCGGTATATGGGTCCATCACCCAGGAAGCGAAGTTTCCCAAACTTGGGAGGCTAGAAAAGGAAAGGTTCGACGACTTAATACCCAAGTTCAAAGGGAGCCTAATGGTAGTGGCATTGGATCCCAAGTTAATGATAGCAGCAGCACTGATGAGAATCCTGAAGATAAACATCGAATGACCTCAGTTCGCAGGGGTCTGCATATGATCAGTTCGGTGTTCCATAGGAATTCCAAGAAGGAGGATAATTCATGCAGCTTTAAAGAGCCAGTCGAAACCCCACGTGTGAATCTAAGGGCAGTTAATGAAAAGGATATTGGTGCGAGTAATGAAAAAGATATTGGTGTGCAACTTGTTATGGATGAAGGCCTTTGTAGCCCTCTTTCTGGCAAGGCAAATTCAAAGGGTGGGGCGTCAAGTTCTGGAGAGAGTGGTTCGGATAGCCCAGGAAAGGGCAAGATGAAAGACATGGCAAAGAATCTCTACAAAAATGCTGAGAGGTCGGTAAAGCATGCACTTTCACGGAAAGGTTCTAGAAAGTCTCAAGCTGATTCCCGCACAGCGAGTGAAAGAGAAATTTTAGCAGATTCTATCTCTTCTGATGATGATTCTCTTCCGTCCCCATTTGTTGAAACGATACCGGTTGCCTCCAAGCCTATACCTCGCAGCTCCGATATTGATTCAGGTATAACGGAGAAGCCCGTGGTTCAGCCGGTAATTGACACTGCAGTGGATGCTGAAGTCCCAGCAAATAGGGTTGAACTTGGAGAACTCGAAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005886 GO:0012505 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00290 ko00650 ko00660 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00290 map00650 map00660 map00770 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

C2 SMP_LBD

Protein Analysis

722

Amino Acids

81.18

Weight (kDa)

6.17

Isoelectric Point (pI)

36.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SMP_MUG190-like	PF25669	187 - 267	1.1e-08	MUG190-like SMP domain
C2	PF00168	287 - 386	9.5e-20	C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000936)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53590 AT3G14590 AT3G14590 AT3G14590 AT3G14590 AT3G14590
fragaria_vesca	FvH4_3g16980 FvH4_3g16980 FvH4_3g16980 FvH4_3g16980 FvH4_3g16980 FvH4_3g17020 FvH4_3g17020 FvH4_3g17020 FvH4_3g17020 FvH4_3g17020 FvH4_3g17020
malus_domestica	MD00G1185500.v1.1 MD00G1185600.v1.1 MD03G1254200.v1.1 MD03G1254900.v1.1 MD11G1275800.v1.1 MD11G1276000.v1.1
prunus_persica	Prupe.4G152200_v2.0.a1 Prupe.4G152200_v2.0.a1 Prupe.4G152300_v2.0.a1 Prupe.4G152300_v2.0.a1 Prupe.4G152300_v2.0.a1 Prupe.4G152300_v2.0.a1 Prupe.4G152300_v2.0.a1 Prupe.4G152300_v2.0.a1 Prupe.4G152300_v2.0.a1
pyrus_communis	pycom03g20170 pycom03g20190 pycom11g24400
rosa_chinensis	RchiOBHm_Chr2g0135571 RchiOBHm_Chr2g0159501 RchiOBHm_Chr2g0159511 RchiOBHm_Chr5g0028301 RchiOBHm_Chr5g0028351 RchiOBHm_Chr5g0039631
rosa_laevigata	RLG00000033080 RLG00000033088
rosa_multiflora	Rmu_sc0001020.1_g000001 Rmu_sc0002481.1_g000040 Rmu_sc0008526.1_g000010
rosa_roxburghii	Rroxscaffold_1G00051350 Rroxscaffold_1G00051420 Rroxscaffold_1G00051430
rosa_rugosa	Rorug05G0105600
rosa_samantha	Rh1AG292900 Rh4AG059100 Rh5AG199100 Rh5AG199600 Rh5BG197700 Rh5BG198100 Rh5CG217400 Rh5CG218100 Rh5DG199400 Rh5DG200000 Rh7DG370100
rosa_wichuraiana	Rw4G016870 Rw5G018160 Rw5G018190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	136
AccI	GTMKAC	1 cut(s)	96
AccII	CGCG	1 cut(s)	684
AciI	CCGC	6 cut(s)	136, 625, 682, 684, 1131, 1939
AclWI	GGATC	5 cut(s)	839, 852, 1006, 1500, 1513
AcsI	RAATTY	8 cut(s)	460, 489, 797, 1004, 1273, 1612, 1780, 1959
AcuI	CTGAAG	3 cut(s)	1142, 1566, 2142
AcvI	CACGTG	1 cut(s)	1667
AcyI	GRCGYC	1 cut(s)	1796
AdeI	CACNNNGTG	1 cut(s)	34
AfaI	GTAC	6 cut(s)	204, 225, 329, 360, 371, 1203
AfiI	CCNNNNNNNGG	8 cut(s)	583, 614, 1395, 1431, 1432, 1769, 1834, 1835
AflIII	ACRYGT	2 cut(s)	1143, 1666
AgeI	ACCGGT	2 cut(s)	1388, 2023
AjnI	CCWGG	4 cut(s)	123, 706, 1408, 1828
AjuI	GAANNNNNNNTTGG	6 cut(s)	923, 955, 1683, 1707, 1715, 1739
AleI	CACNNNNGTG	1 cut(s)	2111
AloI	GAACNNNNNNTCC	2 cut(s)	809, 841
AluBI	AGCT	8 cut(s)	353, 473, 497, 733, 1049, 1641, 1931, 2052
AluI	AGCT	8 cut(s)	353, 473, 497, 733, 1049, 1641, 1931, 2052
Alw26I	GTCTC	2 cut(s)	212, 1929
AlwI	GGATC	5 cut(s)	839, 852, 1006, 1500, 1513
AlwNI	CAGNNNCTG	1 cut(s)	367
AoxI	GGCC	4 cut(s)	257, 605, 616, 1750
ApeKI	GCWGC	6 cut(s)	81, 1183, 1524, 1527, 1638, 2049
ApoI	RAATTY	8 cut(s)	460, 489, 797, 1004, 1273, 1612, 1780, 1959
AsiGI	ACCGGT	2 cut(s)	1388, 2023
AspA2I	CCTAGG	1 cut(s)	613
AspS9I	GGNCC	2 cut(s)	574, 1399
AsuHPI	GGTGA	6 cut(s)	64, 598, 670, 798, 1026, 1397
AsuII	TTCGAA	1 cut(s)	598
AsuNHI	GCTAGC	1 cut(s)	1045
AvaII	GGWCC	2 cut(s)	574, 1399
AvrII	CCTAGG	1 cut(s)	613
AxyI	CCTNAGG	1 cut(s)	1338
BamHI	GGATCC	2 cut(s)	844, 1505
BanII	GRGCYC	1 cut(s)	1362
BauI	CACGAG	1 cut(s)	998
BbrPI	CACGTG	1 cut(s)	1667
BbvI	GCAGC	6 cut(s)	68, 1170, 1536, 1539, 1650, 2061
BccI	CCATC	5 cut(s)	710, 714, 1121, 1367, 1410
BceAI	ACGGC	2 cut(s)	603, 1188
BciT130I	CCWGG	4 cut(s)	125, 708, 1410, 1830
BclI	TGATCA	1 cut(s)	1590
BcoDI	GTCTC	2 cut(s)	212, 1929
BfaI	CTAG	8 cut(s)	494, 518, 614, 779, 1046, 1205, 1440, 1917
BfmI	CTRYAG	1 cut(s)	2109
BisI	GCNGC	6 cut(s)	82, 1184, 1525, 1528, 1639, 2050
BlnI	CCTAGG	1 cut(s)	613
BlsI	GCNGC	6 cut(s)	83, 1185, 1526, 1529, 1640, 2051
Bme1390I	CCNGG	4 cut(s)	125, 708, 1410, 1830
Bme18I	GGWCC	2 cut(s)	574, 1399
BmgT120I	GGNCC	2 cut(s)	574, 1399
BmiI	GGNNCC	5 cut(s)	846, 1306, 1400, 1485, 1507
BmrFI	CCNGG	4 cut(s)	125, 708, 1410, 1830
BmrI	ACTGGG	1 cut(s)	83
BmsI	GCATC	3 cut(s)	373, 890, 2107
BmtI	GCTAGC	1 cut(s)	1049
BmuI	ACTGGG	1 cut(s)	83
BpmI	CTGGAG	1 cut(s)	1827
Bpu14I	TTCGAA	1 cut(s)	598
BpuEI	CTTGAG	1 cut(s)	1911
BsaAI	YACGTR	1 cut(s)	1667
BsaBI	GATNNNNATC	2 cut(s)	1539, 1554
BsaHI	GRCGYC	1 cut(s)	1796
BsaWI	WCCGGW	3 cut(s)	808, 1388, 2023
BsaXI	ACNNNNNCTCC	2 cut(s)	970, 1000
Bsc4I	CCNNNNNNNGG	8 cut(s)	583, 614, 1395, 1431, 1432, 1769, 1834, 1835
Bse118I	RCCGGY	3 cut(s)	1388, 2023, 2095
Bse1I	ACTGG	3 cut(s)	89, 1297, 1652
Bse21I	CCTNAGG	1 cut(s)	1338
Bse8I	GATNNNNATC	2 cut(s)	1539, 1554
BseBI	CCWGG	4 cut(s)	125, 708, 1410, 1830
BseGI	GGATG	7 cut(s)	10, 462, 725, 841, 1132, 1750, 2122
BseJI	GATNNNNATC	2 cut(s)	1539, 1554
BseLI	CCNNNNNNNGG	8 cut(s)	583, 614, 1395, 1431, 1432, 1769, 1834, 1835
BseMII	CTCAG	4 cut(s)	207, 497, 1581, 1869
BseNI	ACTGG	3 cut(s)	89, 1297, 1652
BseRI	GAGGAG	1 cut(s)	287
BseXI	GCAGC	6 cut(s)	68, 1170, 1536, 1539, 1650, 2061
BseYI	CCCAGC	2 cut(s)	1175, 2128
Bsh1236I	CGCG	1 cut(s)	684
BshFI	GGCC	4 cut(s)	259, 607, 618, 1752
BshTI	ACCGGT	2 cut(s)	1388, 2023
BsiSI	CCGG	4 cut(s)	809, 1389, 2024, 2096
BslFI	GGGAC	3 cut(s)	689, 1987, 2111
BslI	CCNNNNNNNGG	8 cut(s)	583, 614, 1395, 1431, 1432, 1769, 1834, 1835
BsmAI	GTCTC	2 cut(s)	212, 1929
BsmFI	GGGAC	3 cut(s)	689, 1987, 2111
BsnI	GGCC	4 cut(s)	259, 607, 618, 1752
Bsp119I	TTCGAA	1 cut(s)	598
Bsp1286I	GDGCHC	1 cut(s)	1362
Bsp143I	GATC	8 cut(s)	54, 660, 844, 901, 1011, 1348, 1505, 1590
BspACI	CCGC	6 cut(s)	136, 625, 682, 684, 1131, 1939
BspANI	GGCC	4 cut(s)	259, 607, 618, 1752
BspCNI	CTCAG	4 cut(s)	208, 498, 1580, 1870
BspFNI	CGCG	1 cut(s)	684
BspHI	TCATGA	1 cut(s)	130
BspLI	GGNNCC	5 cut(s)	846, 1306, 1400, 1485, 1507
BspMAI	CTGCAG	1 cut(s)	2113
BspOI	GCTAGC	1 cut(s)	1049
BspPI	GGATC	5 cut(s)	839, 852, 1006, 1500, 1513
BspT104I	TTCGAA	1 cut(s)	598
BsrBI	CCGCTC	1 cut(s)	136
BsrFI	RCCGGY	3 cut(s)	1388, 2023, 2095
BsrI	ACTGG	3 cut(s)	89, 1297, 1652
BssAI	RCCGGY	3 cut(s)	1388, 2023, 2095
BssMI	GATC	8 cut(s)	54, 660, 844, 901, 1011, 1348, 1505, 1590
BssNI	GRCGYC	1 cut(s)	1796
BssSI	CACGAG	1 cut(s)	998
BssT1I	CCWWGG	3 cut(s)	311, 613, 1090
Bst2BI	CACGAG	1 cut(s)	998
Bst2UI	CCWGG	4 cut(s)	125, 708, 1410, 1830
Bst4CI	ACNGT	7 cut(s)	223, 228, 336, 343, 832, 1201, 1232
Bst6I	CTCTTC	3 cut(s)	1161, 1984, 2001
BstACI	GRCGYC	1 cut(s)	1796
BstAPI	GCANNNNNTGC	1 cut(s)	2117
BstBAI	YACGTR	1 cut(s)	1667
BstBI	TTCGAA	1 cut(s)	598
BstC8I	GCNNGC	4 cut(s)	557, 686, 1047, 1896
BstDEI	CTNAG	8 cut(s)	216, 506, 963, 1121, 1338, 1567, 1676, 1878
BstDSI	CCRYGG	3 cut(s)	335, 682, 2085
BstENI	CCTNNNNNAGG	1 cut(s)	612
BstF5I	GGATG	7 cut(s)	10, 462, 725, 841, 1132, 1750, 2122
BstFNI	CGCG	1 cut(s)	684
BstKTI	GATC	8 cut(s)	57, 663, 847, 904, 1014, 1351, 1508, 1593
BstMAI	GTCTC	2 cut(s)	212, 1929
BstMBI	GATC	8 cut(s)	54, 660, 844, 901, 1011, 1348, 1505, 1590
BstMWI	GCNNNNNNNGC	4 cut(s)	730, 775, 1758, 2117
BstNI	CCWGG	4 cut(s)	125, 708, 1410, 1830
BstNSI	RCATGY	5 cut(s)	559, 563, 1147, 1190, 1898
BstSCI	CCNGG	4 cut(s)	123, 706, 1408, 1828
BstSFI	CTRYAG	1 cut(s)	2109
BstUI	CGCG	1 cut(s)	684
BstV1I	GCAGC	6 cut(s)	68, 1170, 1536, 1539, 1650, 2061
BstX2I	RGATCY	3 cut(s)	844, 1011, 1505
BstYI	RGATCY	3 cut(s)	844, 1011, 1505
Bsu36I	CCTNAGG	1 cut(s)	1338
BsuRI	GGCC	4 cut(s)	259, 607, 618, 1752
BtgI	CCRYGG	3 cut(s)	335, 682, 2085
BtsCI	GGATG	7 cut(s)	10, 462, 725, 841, 1132, 1750, 2122
BtsI	GCAGTG	2 cut(s)	2106, 2118
BtsIMutI	CAGTG	6 cut(s)	828, 1290, 1291, 1530, 2106, 2118
Cac8I	GCNNGC	4 cut(s)	557, 686, 1047, 1896
CaiI	CAGNNNCTG	1 cut(s)	367
CciI	TCATGA	1 cut(s)	130
Cfr10I	RCCGGY	3 cut(s)	1388, 2023, 2095
Cfr13I	GGNCC	2 cut(s)	574, 1399
Cfr42I	CCGCGG	1 cut(s)	685
CseI	GACGC	1 cut(s)	1785
CsiI	ACCWGGT	1 cut(s)	123
Csp6I	GTAC	6 cut(s)	203, 224, 328, 359, 370, 1202
CspAI	ACCGGT	2 cut(s)	1388, 2023
CviQI	GTAC	6 cut(s)	203, 224, 328, 359, 370, 1202
DdeI	CTNAG	8 cut(s)	216, 506, 963, 1121, 1338, 1567, 1676, 1878
DpnI	GATC	8 cut(s)	56, 662, 846, 903, 1013, 1350, 1507, 1592
DpnII	GATC	8 cut(s)	54, 660, 844, 901, 1011, 1348, 1505, 1590
DraI	TTTAAA	1 cut(s)	1645
DraIII	CACNNNGTG	1 cut(s)	34
Eam1104I	CTCTTC	3 cut(s)	1161, 1984, 2001
EarI	CTCTTC	3 cut(s)	1161, 1984, 2001
Eco130I	CCWWGG	3 cut(s)	311, 613, 1090
Eco147I	AGGCCT	1 cut(s)	1752
Eco24I	GRGCYC	1 cut(s)	1362
Eco47I	GGWCC	2 cut(s)	574, 1399
Eco57I	CTGAAG	3 cut(s)	1142, 1566, 2142
Eco72I	CACGTG	1 cut(s)	1667
Eco81I	CCTNAGG	1 cut(s)	1338
EcoNI	CCTNNNNNAGG	1 cut(s)	612
EcoO109I	RGGNCCY	1 cut(s)	574
EcoRI	GAATTC	2 cut(s)	489, 1612
EcoRII	CCWGG	4 cut(s)	123, 706, 1408, 1828
EcoT14I	CCWWGG	3 cut(s)	311, 613, 1090
EcoT22I	ATGCAT	1 cut(s)	561
EcoT38I	GRGCYC	1 cut(s)	1362
ErhI	CCWWGG	3 cut(s)	311, 613, 1090
FaqI	GGGAC	3 cut(s)	689, 1987, 2111
FauI	CCCGC	4 cut(s)	677, 689, 1124, 1946
FauNDI	CATATG	1 cut(s)	1587
FbaI	TGATCA	1 cut(s)	1590
FblI	GTMKAC	1 cut(s)	96
Fnu4HI	GCNGC	6 cut(s)	82, 1184, 1525, 1528, 1639, 2050
FokI	GGATG	7 cut(s)	17, 469, 732, 848, 1139, 1757, 2129
FriOI	GRGCYC	1 cut(s)	1362
Fsp4HI	GCNGC	6 cut(s)	82, 1184, 1525, 1528, 1639, 2050
FspBI	CTAG	8 cut(s)	494, 518, 614, 779, 1046, 1205, 1440, 1917
GluI	GCNGC	6 cut(s)	82, 1184, 1525, 1528, 1639, 2050
GsaI	CCCAGC	2 cut(s)	1179, 2132
GsuI	CTGGAG	1 cut(s)	1827
HaeIII	GGCC	4 cut(s)	259, 607, 618, 1752
HapII	CCGG	4 cut(s)	809, 1389, 2024, 2096
HgaI	GACGC	1 cut(s)	1785
Hin1I	GRCGYC	1 cut(s)	1796
HincII	GTYRAC	1 cut(s)	787
HindII	GTYRAC	1 cut(s)	787
HindIII	AAGCTT	1 cut(s)	731
HpaII	CCGG	4 cut(s)	809, 1389, 2024, 2096
HphI	GGTGA	6 cut(s)	64, 598, 670, 798, 1026, 1397
Hpy166II	GTNNAC	6 cut(s)	97, 339, 396, 787, 828, 949
Hpy188III	TCNNGA	8 cut(s)	131, 532, 577, 1235, 1244, 1544, 1806, 1917
Hpy8I	GTNNAC	6 cut(s)	97, 339, 396, 787, 828, 949
Hpy99I	CGWCG	1 cut(s)	1461
HpyCH4III	ACNGT	7 cut(s)	223, 228, 336, 343, 832, 1201, 1232
HpyCH4IV	ACGT	1 cut(s)	1666
HpyF10VI	GCNNNNNNNGC	4 cut(s)	730, 775, 1758, 2117
HpyF3I	CTNAG	8 cut(s)	216, 506, 963, 1121, 1338, 1567, 1676, 1878
HpySE526I	ACGT	1 cut(s)	1666
Hsp92I	GRCGYC	1 cut(s)	1796
Ksp22I	TGATCA	1 cut(s)	1590
KspI	CCGCGG	1 cut(s)	685
Kzo9I	GATC	8 cut(s)	54, 660, 844, 901, 1011, 1348, 1505, 1590
LmnI	GCTCC	2 cut(s)	1483, 2057
Lsp1109I	GCAGC	6 cut(s)	68, 1170, 1536, 1539, 1650, 2061
LweI	GCATC	3 cut(s)	373, 890, 2107
MabI	ACCWGGT	1 cut(s)	123
MaeI	CTAG	8 cut(s)	494, 518, 614, 779, 1046, 1205, 1440, 1917
MaeII	ACGT	1 cut(s)	1666
MaeIII	GTNAC	5 cut(s)	7, 16, 694, 1195, 1286
MalI	GATC	8 cut(s)	56, 662, 846, 903, 1013, 1350, 1507, 1592
MbiI	CCGCTC	1 cut(s)	136
MboI	GATC	8 cut(s)	54, 660, 844, 901, 1011, 1348, 1505, 1590
MboII	GAAGA	8 cut(s)	169, 390, 404, 1148, 1274, 1559, 1971, 1988
MfeI	CAATTG	1 cut(s)	76
MflI	RGATCY	3 cut(s)	844, 1011, 1505
MhlI	GDGCHC	1 cut(s)	1362
MlyI	GAGTC	1 cut(s)	979
Mph1103I	ATGCAT	1 cut(s)	561
MslI	CAYNNNNRTG	2 cut(s)	401, 2111
MspA1I	CMGCKG	2 cut(s)	473, 684
MspI	CCGG	4 cut(s)	809, 1389, 2024, 2096
MspR9I	CCNGG	4 cut(s)	125, 708, 1410, 1830
MunI	CAATTG	1 cut(s)	76
MvaI	CCWGG	4 cut(s)	125, 708, 1410, 1830
MvnI	CGCG	1 cut(s)	684
MwoI	GCNNNNNNNGC	4 cut(s)	730, 775, 1758, 2117
NdeI	CATATG	1 cut(s)	1587
NdeII	GATC	8 cut(s)	54, 660, 844, 901, 1011, 1348, 1505, 1590
NheI	GCTAGC	1 cut(s)	1045
NlaIV	GGNNCC	5 cut(s)	846, 1306, 1400, 1485, 1507
NmuCI	GTSAC	1 cut(s)	1286
NsiI	ATGCAT	1 cut(s)	561
NspI	RCATGY	5 cut(s)	559, 563, 1147, 1190, 1898
NspV	TTCGAA	1 cut(s)	598
OliI	CACNNNNGTG	1 cut(s)	2111
PaeI	GCATGC	2 cut(s)	559, 1898
PagI	TCATGA	1 cut(s)	130
PasI	CCCWGGG	1 cut(s)	707
PceI	AGGCCT	1 cut(s)	1752
PciI	ACATGT	1 cut(s)	1143
PinAI	ACCGGT	2 cut(s)	1388, 2023
PkrI	GCNGC	6 cut(s)	83, 1185, 1526, 1529, 1640, 2051
PleI	GAGTC	1 cut(s)	979
PmaCI	CACGTG	1 cut(s)	1667
PmlI	CACGTG	1 cut(s)	1667
PpsI	GAGTC	1 cut(s)	979
Ppu21I	YACGTR	1 cut(s)	1667
PpuMI	RGGWCCY	1 cut(s)	574
PscI	ACATGT	1 cut(s)	1143
Psp5II	RGGWCCY	1 cut(s)	574
Psp6I	CCWGG	4 cut(s)	123, 706, 1408, 1828
PspCI	CACGTG	1 cut(s)	1667
PspFI	CCCAGC	2 cut(s)	1175, 2128
PspGI	CCWGG	4 cut(s)	123, 706, 1408, 1828
PspN4I	GGNNCC	5 cut(s)	846, 1306, 1400, 1485, 1507
PspPI	GGNCC	2 cut(s)	574, 1399
PspPPI	RGGWCCY	1 cut(s)	574
PsrI	GAACNNNNNNTAC	2 cut(s)	1288, 1320
PstI	CTGCAG	1 cut(s)	2113
PstNI	CAGNNNCTG	1 cut(s)	367
PsuI	RGATCY	3 cut(s)	844, 1011, 1505
PvuII	CAGCTG	1 cut(s)	473
RsaI	GTAC	6 cut(s)	204, 225, 329, 360, 371, 1203
RsaNI	GTAC	6 cut(s)	203, 224, 328, 359, 370, 1202
RseI	CAYNNNNRTG	2 cut(s)	401, 2111
SacII	CCGCGG	1 cut(s)	685
SatI	GCNGC	6 cut(s)	82, 1184, 1525, 1528, 1639, 2050
Sau3AI	GATC	8 cut(s)	54, 660, 844, 901, 1011, 1348, 1505, 1590
Sau96I	GGNCC	2 cut(s)	574, 1399
SchI	GAGTC	1 cut(s)	979
ScrFI	CCNGG	4 cut(s)	125, 708, 1410, 1830
SduI	GDGCHC	1 cut(s)	1362
SexAI	ACCWGGT	1 cut(s)	123
SfaNI	GCATC	3 cut(s)	373, 890, 2107
SfcI	CTRYAG	1 cut(s)	2109
Sfr303I	CCGCGG	1 cut(s)	685
SfuI	TTCGAA	1 cut(s)	598
SgrBI	CCGCGG	1 cut(s)	685
SinI	GGWCC	2 cut(s)	574, 1399
SmiMI	CAYNNNNRTG	2 cut(s)	401, 2111
SmlI	CTYRAG	1 cut(s)	1926
SmoI	CTYRAG	1 cut(s)	1926
SphI	GCATGC	2 cut(s)	559, 1898
SseBI	AGGCCT	1 cut(s)	1752
SsiI	CCGC	6 cut(s)	136, 625, 682, 684, 1131, 1939
SspMI	CTAG	8 cut(s)	494, 518, 614, 779, 1046, 1205, 1440, 1917
StuI	AGGCCT	1 cut(s)	1752
StyD4I	CCNGG	4 cut(s)	123, 706, 1408, 1828
StyI	CCWWGG	3 cut(s)	311, 613, 1090
TaaI	ACNGT	7 cut(s)	223, 228, 336, 343, 832, 1201, 1232
TaiI	ACGT	1 cut(s)	1669
TaqI	TCGA	6 cut(s)	598, 876, 1456, 1558, 1656, 2157
TatI	WGTACW	2 cut(s)	327, 369
TscAI	CASTG	6 cut(s)	835, 1291, 1297, 1537, 2113, 2118
TseFI	GTSAC	1 cut(s)	1286
TseI	GCWGC	6 cut(s)	81, 1183, 1524, 1527, 1638, 2049
Tsp45I	GTSAC	1 cut(s)	1286
TspDTI	ATGAA	9 cut(s)	91, 119, 473, 905, 1623, 1704, 1728, 1761, 1859
TspGWI	ACGGA	3 cut(s)	1921, 1989, 2090
TspRI	CASTG	6 cut(s)	835, 1291, 1297, 1537, 2113, 2118
VpaK11BI	GGWCC	2 cut(s)	574, 1399
XagI	CCTNNNNNAGG	1 cut(s)	612
XapI	RAATTY	8 cut(s)	460, 489, 797, 1004, 1273, 1612, 1780, 1959
XbaI	TCTAGA	1 cut(s)	1916
XceI	RCATGY	5 cut(s)	559, 563, 1147, 1190, 1898
XmaJI	CCTAGG	1 cut(s)	613
XmiI	GTMKAC	1 cut(s)	96
XspI	CTAG	8 cut(s)	494, 518, 614, 779, 1046, 1205, 1440, 1917
Zsp2I	ATGCAT	1 cut(s)	561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.