MD01G1187100.v1.1

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
Physical Location & Seq
Forward (+)
28581293 .. 28582920
1628 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1187100.v1.1.491

Sequence Viewer

Length: 1608 bp
ATGGCAGAACAGATTGTATGCTTTGTGATCGACAAGTTAATTCAACTACTCATCGCCACAGAAGCAAACCTTTCGAGAAATGCACGTACTGAAGTTGGTTTCATCAAAGATGAACTCGAAAGCATCCGATCATTCCTCAAGGAAGCAGATGCTATGGCTGCAGCAGCAGATGGAGAGACGGGGAATGACGGTGTCAAAACTTGGGTCAATCAAGTAAGAGAAGCAGCTTTTTACATTGAAGATGTCATTGATGAATATTTGCTCCGCATCTTATGGCATCATCAACACACCATGGATTCCTTCGTTTTTTTCCACAAAATTATCCGGTTGGCTAAAAAAATGAGATCAAAGGATGGGATAGTTTCGAAAGTTGACAGTATAAAAAAATTGGTTCGTGAAATCAAGGAGAGAAGTGAAAGATATGGATTCAAATCCATTGATCAGCAAGGCCAGAGCAGTGGAGAAAAGACTCTACTGTCGAACGACCCTCGAGTGGCTTCCCTTTTCATTAAGGAAGCTGAAATTGTGGGGATTGAATCTGCCAGAGATGAGCTAACTCGTTTGTTGGTAGAAGGAGCGACGAGACGTGAAGTGATATCAGTGGTTGGCATGGGAGGACTTGGGAAAACCACTCTTGCCAAGAAAGTGTATGACCAGCCGAAGGTGATGGCACACTTTGATTGCTATGCTTGGATTACAGTGTCCCAGTCGTACAGGGTTGAGGATCTTCTGAGGACGGTAATCAAAAAGTTCTACAGTTCAAGGAAGGAGCGTTTCCCAGAGGAAATTGACACAATGGATGAGGAGTCCCTGATTAGCACATCGAGAGAGTATTTGCAGCAAAAGAGGTACATTGTTGTGTTTGATGATGTGTGGAAAGTAGATTTTTGGGGGGCAATAGAACATGCTTTACCCGATAATGAAGGCGGACGAATAATTATCACTACACGGATTCAAGATGTTGCCAACTTTTGCAAAAGATCTTGTTTTGTTCATGTTCATCACTTGCAGCATCTGCCTCCAAACAAGGCATGGAAATTGTTTTGTAGGAAGGCATTTCAGTTTGAATTGGAGGGAAAGTGTCCTGAAGAGTTGGAAGAGTTGTCTCTTAACATCGTCAAAAGATGCGAAGGACTACCTTTGGCAATTGTTTCCGTAGGTGGTCTGCTGTCAACCAAAGCTAAAGTTGTGTCTGAATGGCAGAAGTTATACAATAGCTTAAGTTCAGAGTTAGAAAGCAATCCCCACCTTACAAGCCTCACAAGAATCCTATCCCTCAGCTATCACCATCTACCGTATTACCTCAAATCTTGTGTATTATACTTTGGCATCTTTCCTGAGGATTACTCAGTTAGTTGCATAAGATTAGTTCGGTTGTGGATCGCTGAAGGCTTTGTGAAACCGAAGATGGGCAAGACACTAGAAGAGGTTGGAGAGGAATACTTGATGGAGCTAATTCACAGAAGCCTGGTTCAAGTTTCAGAAGTTTACATTGATGGAAAAGCTCGAGGTTGTAGAGTTCATGATCTATTGCACGACGTCCTCCTTAAAAAGGGGTTGGATTCCAGCTTCTGTCATGTGTTTATCAAAAGGCAAGTTGACTTTTAA

Protein Analysis

536

Amino Acids

61.47

Weight (kDa)

6.8

Isoelectric Point (pI)

41.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 5 - 99 4e-20 Rx N-terminal domain
NB-ARC PF00931 182 - 356 2.8e-42 NB-ARC domain
WHD_DRP PF23559 444 - 514 4.2e-25 Disease resistance protein Winged helix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 475
AatII GACGTC 1 cut(s) 1542
AciI CCGC 2 cut(s) 265, 927
AclWI GGATC 2 cut(s) 732, 1388
AcuI CTGAAG 3 cut(s) 111, 1107, 1407
AcyI GRCGYC 1 cut(s) 1539
AfaI GTAC 3 cut(s) 88, 713, 851
AfiI CCNNNNNNNGG 4 cut(s) 493, 661, 1409, 1552
AflII CTTAAG 1 cut(s) 1219
AgsI TTSAA 8 cut(s) 44, 239, 430, 536, 762, 956, 1067, 1475
AjiI CACGTC 1 cut(s) 587
AjnI CCWGG 1 cut(s) 1467
AluBI AGCT 9 cut(s) 227, 518, 553, 1181, 1218, 1281, 1453, 1505, 1569
AluI AGCT 9 cut(s) 227, 518, 553, 1181, 1218, 1281, 1453, 1505, 1569
Alw26I GTCTC 3 cut(s) 170, 577, 1110
AlwI GGATC 2 cut(s) 732, 1388
AlwNI CAGNNNCTG 2 cut(s) 1015, 1572
Ama87I CYCGRG 2 cut(s) 489, 1506
AoxI GGCC 1 cut(s) 448
ApeKI GCWGC 6 cut(s) 158, 161, 164, 224, 838, 1009
ArsI GACNNNNNNTTYG 2 cut(s) 189, 221
AsuHPI GGTGA 2 cut(s) 676, 1277
AsuII TTCGAA 1 cut(s) 365
AvaI CYCGRG 2 cut(s) 489, 1506
AxyI CCTNAGG 1 cut(s) 1338
BbvCI CCTCAGC 1 cut(s) 1277
BbvI GCAGC 6 cut(s) 145, 173, 176, 236, 850, 1021
BccI CCATC 7 cut(s) 164, 347, 661, 1296, 1402, 1441, 1490
BcgI CGANNNNNNTGC 2 cut(s) 54, 88
BciT130I CCWGG 1 cut(s) 1469
BclI TGATCA 1 cut(s) 439
BcoDI GTCTC 3 cut(s) 170, 577, 1110
BfaI CTAG 1 cut(s) 1421
BfmI CTRYAG 2 cut(s) 159, 754
BfrI CTTAAG 1 cut(s) 1219
BglII AGATCT 1 cut(s) 980
BisI GCNGC 6 cut(s) 159, 162, 165, 225, 839, 1010
BlsI GCNGC 6 cut(s) 160, 163, 166, 226, 840, 1011
Bme1390I CCNGG 1 cut(s) 1469
BmeT110I CYCGRG 2 cut(s) 489, 1506
BmgBI CACGTC 1 cut(s) 587
BmrFI CCNGG 1 cut(s) 1469
BmrI ACTGGG 1 cut(s) 700
BmsI GCATC 7 cut(s) 132, 139, 276, 286, 1021, 1115, 1338
BmuI ACTGGG 1 cut(s) 700
BplI GAGNNNNNCTC 2 cut(s) 1331, 1363
Bpu10I CCTNAGC 1 cut(s) 1277
Bpu14I TTCGAA 1 cut(s) 365
BpuEI CTTGAG 1 cut(s) 122
BsaAI YACGTR 1 cut(s) 86
BsaBI GATNNNNATC 1 cut(s) 430
BsaHI GRCGYC 1 cut(s) 1539
BsaJI CCNNGG 1 cut(s) 291
BsaWI WCCGGW 1 cut(s) 324
BsaXI ACNNNNNCTCC 2 cut(s) 1064, 1094
Bsc4I CCNNNNNNNGG 4 cut(s) 493, 661, 1409, 1552
Bse1I ACTGG 1 cut(s) 706
Bse21I CCTNAGG 1 cut(s) 1338
Bse8I GATNNNNATC 1 cut(s) 430
BseBI CCWGG 1 cut(s) 1469
BseDI CCNNGG 1 cut(s) 291
BseGI GGATG 3 cut(s) 123, 358, 805
BseJI GATNNNNATC 1 cut(s) 430
BseLI CCNNNNNNNGG 4 cut(s) 493, 661, 1409, 1552
BseMII CTCAG 4 cut(s) 722, 1291, 1329, 1362
BseNI ACTGG 1 cut(s) 706
BseRI GAGGAG 1 cut(s) 818
BseXI GCAGC 6 cut(s) 145, 173, 176, 236, 850, 1021
BshFI GGCC 1 cut(s) 450
BsiHKCI CYCGRG 2 cut(s) 489, 1506
BsiSI CCGG 1 cut(s) 325
BslFI GGGAC 2 cut(s) 688, 793
BslI CCNNNNNNNGG 4 cut(s) 493, 661, 1409, 1552
BsmAI GTCTC 3 cut(s) 170, 577, 1110
BsmBI CGTCTC 2 cut(s) 170, 577
BsmFI GGGAC 2 cut(s) 688, 793
BsnI GGCC 1 cut(s) 450
BsoBI CYCGRG 2 cut(s) 489, 1506
Bsp119I TTCGAA 1 cut(s) 365
Bsp143I GATC 8 cut(s) 27, 128, 344, 439, 724, 980, 1380, 1525
Bsp19I CCATGG 1 cut(s) 291
BspACI CCGC 2 cut(s) 265, 927
BspANI GGCC 1 cut(s) 450
BspCNI CTCAG 4 cut(s) 723, 1290, 1330, 1361
BspHI TCATGA 1 cut(s) 1522
BspMAI CTGCAG 1 cut(s) 163
BspPI GGATC 2 cut(s) 732, 1388
BspT104I TTCGAA 1 cut(s) 365
BspTI CTTAAG 1 cut(s) 1219
BsrI ACTGG 1 cut(s) 706
BssECI CCNNGG 1 cut(s) 291
BssMI GATC 8 cut(s) 27, 128, 344, 439, 724, 980, 1380, 1525
BssNI GRCGYC 1 cut(s) 1539
BssT1I CCWWGG 1 cut(s) 291
Bst2UI CCWGG 1 cut(s) 1469
Bst4CI ACNGT 7 cut(s) 191, 377, 477, 700, 739, 758, 1296
Bst6I CTCTTC 3 cut(s) 1083, 1092, 1419
BstACI GRCGYC 1 cut(s) 1539
BstAFI CTTAAG 1 cut(s) 1219
BstAPI GCANNNNNTGC 1 cut(s) 1015
BstBAI YACGTR 1 cut(s) 86
BstBI TTCGAA 1 cut(s) 365
BstDEI CTNAG 4 cut(s) 731, 1277, 1338, 1348
BstDSI CCRYGG 1 cut(s) 291
BstENI CCTNNNNNAGG 1 cut(s) 1550
BstF5I GGATG 3 cut(s) 123, 358, 805
BstKTI GATC 8 cut(s) 30, 131, 347, 442, 727, 983, 1383, 1528
BstMAI GTCTC 3 cut(s) 170, 577, 1110
BstMBI GATC 8 cut(s) 27, 128, 344, 439, 724, 980, 1380, 1525
BstMWI GCNNNNNNNGC 4 cut(s) 62, 158, 164, 1015
BstNI CCWGG 1 cut(s) 1469
BstNSI RCATGY 1 cut(s) 908
BstSCI CCNGG 1 cut(s) 1467
BstSFI CTRYAG 2 cut(s) 159, 754
BstV1I GCAGC 6 cut(s) 145, 173, 176, 236, 850, 1021
BstX2I RGATCY 2 cut(s) 724, 980
BstXI CCANNNNNNTGG 1 cut(s) 458
BstYI RGATCY 2 cut(s) 724, 980
Bsu36I CCTNAGG 1 cut(s) 1338
BsuRI GGCC 1 cut(s) 450
BtgI CCRYGG 1 cut(s) 291
BtgZI GCGATG 1 cut(s) 37
BtrI CACGTC 1 cut(s) 587
BtsCI GGATG 3 cut(s) 123, 358, 805
BtsI GCAGTG 1 cut(s) 463
BtsIMutI CAGTG 3 cut(s) 463, 606, 705
CaiI CAGNNNCTG 2 cut(s) 1015, 1572
CciI TCATGA 1 cut(s) 1522
Csp6I GTAC 3 cut(s) 87, 712, 850
CviAII CATG 7 cut(s) 292, 610, 905, 995, 1032, 1523, 1577
CviQI GTAC 3 cut(s) 87, 712, 850
DdeI CTNAG 4 cut(s) 731, 1277, 1338, 1348
DpnI GATC 8 cut(s) 29, 130, 346, 441, 726, 982, 1382, 1527
DpnII GATC 8 cut(s) 27, 128, 344, 439, 724, 980, 1380, 1525
DrdI GACNNNNNNGTC 1 cut(s) 475
DseDI GACNNNNNNGTC 1 cut(s) 475
Eam1104I CTCTTC 3 cut(s) 1083, 1092, 1419
EarI CTCTTC 3 cut(s) 1083, 1092, 1419
EciI GGCGGA 1 cut(s) 942
Eco130I CCWWGG 1 cut(s) 291
Eco32I GATATC 1 cut(s) 597
Eco57I CTGAAG 3 cut(s) 111, 1107, 1407
Eco81I CCTNAGG 1 cut(s) 1338
Eco88I CYCGRG 2 cut(s) 489, 1506
EcoNI CCTNNNNNAGG 1 cut(s) 1550
EcoRII CCWGG 1 cut(s) 1467
EcoRV GATATC 1 cut(s) 597
EcoT14I CCWWGG 1 cut(s) 291
ErhI CCWWGG 1 cut(s) 291
Esp3I CGTCTC 2 cut(s) 170, 577
FaeI CATG 7 cut(s) 295, 613, 908, 998, 1035, 1526, 1580
FalI AAGNNNNNCTT 2 cut(s) 54, 86
FaqI GGGAC 2 cut(s) 688, 793
FatI CATG 7 cut(s) 291, 609, 904, 994, 1031, 1522, 1576
FbaI TGATCA 1 cut(s) 439
Fnu4HI GCNGC 6 cut(s) 159, 162, 165, 225, 839, 1010
FokI GGATG 3 cut(s) 110, 365, 812
Fsp4HI GCNGC 6 cut(s) 159, 162, 165, 225, 839, 1010
FspBI CTAG 1 cut(s) 1421
GluI GCNGC 6 cut(s) 159, 162, 165, 225, 839, 1010
HaeIII GGCC 1 cut(s) 450
HapII CCGG 1 cut(s) 325
Hin1I GRCGYC 1 cut(s) 1539
Hin1II CATG 7 cut(s) 295, 613, 908, 998, 1035, 1526, 1580
HincII GTYRAC 3 cut(s) 373, 1173, 1600
HindII GTYRAC 3 cut(s) 373, 1173, 1600
HinfI GANTC 8 cut(s) 296, 426, 469, 536, 806, 952, 1266, 1562
HpaII CCGG 1 cut(s) 325
HphI GGTGA 2 cut(s) 676, 1277
Hpy166II GTNNAC 4 cut(s) 373, 1173, 1489, 1600
Hpy188I TCNGA 5 cut(s) 128, 732, 1195, 1228, 1483
Hpy188III TCNNGA 7 cut(s) 75, 395, 825, 956, 1085, 1337, 1523
Hpy8I GTNNAC 4 cut(s) 373, 1173, 1489, 1600
Hpy99I CGWCG 2 cut(s) 583, 1541
HpyAV CCTTC 8 cut(s) 310, 566, 655, 760, 917, 1045, 1124, 1382
HpyCH4III ACNGT 7 cut(s) 191, 377, 477, 700, 739, 758, 1296
HpyCH4IV ACGT 3 cut(s) 85, 586, 1539
HpyCH4V TGCA 7 cut(s) 83, 161, 838, 975, 1009, 1359, 1534
HpyF10VI GCNNNNNNNGC 4 cut(s) 62, 158, 164, 1015
HpyF3I CTNAG 4 cut(s) 731, 1277, 1338, 1348
HpySE526I ACGT 3 cut(s) 85, 586, 1539
Hsp92I GRCGYC 1 cut(s) 1539
Hsp92II CATG 7 cut(s) 295, 613, 908, 998, 1035, 1526, 1580
Ksp22I TGATCA 1 cut(s) 439
Kzo9I GATC 8 cut(s) 27, 128, 344, 439, 724, 980, 1380, 1525
LmnI GCTCC 4 cut(s) 267, 575, 769, 1450
Lsp1109I GCAGC 6 cut(s) 145, 173, 176, 236, 850, 1021
LweI GCATC 7 cut(s) 132, 139, 276, 286, 1021, 1115, 1338
MaeI CTAG 1 cut(s) 1421
MaeII ACGT 3 cut(s) 85, 586, 1539
MalI GATC 8 cut(s) 29, 130, 346, 441, 726, 982, 1382, 1527
MboI GATC 8 cut(s) 27, 128, 344, 439, 724, 980, 1380, 1525
MboII GAAGA 6 cut(s) 251, 719, 1100, 1109, 1417, 1436
MfeI CAATTG 1 cut(s) 1146
MflI RGATCY 2 cut(s) 724, 980
MlyI GAGTC 2 cut(s) 463, 815
MmeI TCCRAC 3 cut(s) 1074, 1411, 1539
MseI TTAA 6 cut(s) 38, 510, 1110, 1220, 1548, 1606
MslI CAYNNNNRTG 1 cut(s) 857
MspCI CTTAAG 1 cut(s) 1219
MspI CCGG 1 cut(s) 325
MspR9I CCNGG 1 cut(s) 1469
MunI CAATTG 1 cut(s) 1146
MvaI CCWGG 1 cut(s) 1469
MwoI GCNNNNNNNGC 4 cut(s) 62, 158, 164, 1015
NcoI CCATGG 1 cut(s) 291
NdeII GATC 8 cut(s) 27, 128, 344, 439, 724, 980, 1380, 1525
NlaIII CATG 7 cut(s) 295, 613, 908, 998, 1035, 1526, 1580
NspI RCATGY 1 cut(s) 908
NspV TTCGAA 1 cut(s) 365
PaeR7I CTCGAG 2 cut(s) 489, 1506
PagI TCATGA 1 cut(s) 1522
PfeI GAWTC 6 cut(s) 296, 426, 536, 952, 1266, 1562
PflFI GACNNNGTC 1 cut(s) 191
PkrI GCNGC 6 cut(s) 160, 163, 166, 226, 840, 1011
PleI GAGTC 2 cut(s) 463, 814
PpsI GAGTC 2 cut(s) 463, 814
Ppu21I YACGTR 1 cut(s) 86
Psp6I CCWGG 1 cut(s) 1467
PspGI CCWGG 1 cut(s) 1467
PspXI VCTCGAGB 2 cut(s) 489, 1506
PsrI GAACNNNNNNTAC 2 cut(s) 894, 926
PstI CTGCAG 1 cut(s) 163
PstNI CAGNNNCTG 2 cut(s) 1015, 1572
PsuI RGATCY 2 cut(s) 724, 980
PsyI GACNNNGTC 1 cut(s) 191
RsaI GTAC 3 cut(s) 88, 713, 851
RsaNI GTAC 3 cut(s) 87, 712, 850
RseI CAYNNNNRTG 1 cut(s) 857
SaqAI TTAA 6 cut(s) 38, 510, 1110, 1220, 1548, 1606
SatI GCNGC 6 cut(s) 159, 162, 165, 225, 839, 1010
Sau3AI GATC 8 cut(s) 27, 128, 344, 439, 724, 980, 1380, 1525
SchI GAGTC 2 cut(s) 463, 815
ScrFI CCNGG 1 cut(s) 1469
SfaNI GCATC 7 cut(s) 132, 139, 276, 286, 1021, 1115, 1338
SfcI CTRYAG 2 cut(s) 159, 754
Sfr274I CTCGAG 2 cut(s) 489, 1506
SfuI TTCGAA 1 cut(s) 365
SlaI CTCGAG 2 cut(s) 489, 1506
SmiMI CAYNNNNRTG 1 cut(s) 857
SmlI CTYRAG 4 cut(s) 137, 489, 1219, 1506
SmoI CTYRAG 4 cut(s) 137, 489, 1219, 1506
SsiI CCGC 2 cut(s) 265, 927
SspI AATATT 1 cut(s) 257
SspMI CTAG 1 cut(s) 1421
StyD4I CCNGG 1 cut(s) 1467
StyI CCWWGG 1 cut(s) 291
TaaI ACNGT 7 cut(s) 191, 377, 477, 700, 739, 758, 1296
TaiI ACGT 3 cut(s) 88, 589, 1542
TaqI TCGA 8 cut(s) 30, 74, 117, 365, 479, 490, 824, 1507
TfiI GAWTC 6 cut(s) 296, 426, 536, 952, 1266, 1562
Tru1I TTAA 6 cut(s) 38, 510, 1110, 1220, 1548, 1606
Tru9I TTAA 6 cut(s) 38, 510, 1110, 1220, 1548, 1606
TscAI CASTG 3 cut(s) 463, 606, 705
TseI GCWGC 6 cut(s) 158, 161, 164, 224, 838, 1009
TspDTI ATGAA 8 cut(s) 91, 126, 267, 496, 936, 983, 989, 1511
TspGWI ACGGA 2 cut(s) 964, 1144
TspRI CASTG 3 cut(s) 463, 606, 705
Tth111I GACNNNGTC 1 cut(s) 191
Vha464I CTTAAG 1 cut(s) 1219
XagI CCTNNNNNAGG 1 cut(s) 1550
XceI RCATGY 1 cut(s) 908
XcmI CCANNNNNNNNNTGG 1 cut(s) 1029
XhoI CTCGAG 2 cut(s) 489, 1506
XspI CTAG 1 cut(s) 1421
ZraI GACGTC 1 cut(s) 1540
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.