Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0003960

Physical Location & Seq

Genomic Coordinates Forward (+)

32489583 .. 32492144

Gene Structure 2562 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1258800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGGACGCTCCAATCAATCAACTTCCGAAATATGTGGGGGATTTGTATCTCCTGACGTACTTAAGCCTGAGAAATACAAAGGTGGAGTTGCTTCCAGACTCCATAGGCAATCTGCAAAACTTAGAAACCCTGGATCTAAAACAGTCTTTGGTGTATCAAATACCGGCCAAGATCAATAAGCTTGTTAAGCTGCGGCATCTTTTGGCCTACTACCGCAACTACAACATGGATTTTTGCATGAATAGGGAAAGAGGAGTGAAGATGCATGAAGGTGTTGGATGCTTACAAGATTTGCAAAAATTGTACTATGTGGAGGCGAATCATGGAGGGATCAAGCTAATCAAAGAACTGGGAAAGTTGAGGCAGCTACGAAAGTTAGGACTAAAAAAATTGAAACGTGAAGATGGAAAGGCTCTGTGTGTTTGTATTGAAAAGATGAATCACCTTGAATCGCTAGATTTAAGTGCAATAAGTGAAGATGAAGTCCTTGATCTACAATCCATTTCAACTCCGCCAGAATTTATTCGGTCTGTGTGGTTGAAGGGGCGTTTAGAACAGTTGCCAAGTTGGATTTCAAATCTTCAACAACTCGTCAGATTGGTGATTTATTGGTCAGGGTTGAGAGATTCCCCATTGAAAGCCCTTCAAAATCTACCTAATCTGTTGGAGCTTCGAAAAATGGGATATGATGGCGTGCAGCTGCATTTTGAGGAAGGAGGATTTCAGAAACTTAGGGAGCTAAAACTCGGGGAAATGGGAGGACTAAATTCACTGATCATAGACAATGGTGTTATGCCTCTTCTCCAAGAGTTTCACATTGGATCTTGCCCACTGAAGGAGGTGCCATCTGGCATCCACCATCTCCGAAATCTGAGATATCTTGTGTTTTATGACATGCCGAAGGAGTTTGCACAACAAATGGATCCAAATAATGGCCCACATTACTGGATTGTTAAACATATACAACATGACGGTTTTGGTTACAAGTTTGGCCCGAGATATGACCATGAAAGACACTTACTGTATGATTCTGACTTTTCGTTTTGGTCGAATGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009626 GO:0009987 GO:0012501 GO:0016020 GO:0019897 GO:0019898 GO:0023052 GO:0033554 GO:0034050 GO:0036094 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

353

Amino Acids

40.84

Weight (kDa)

8.41

Isoelectric Point (pI)

52.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	10 - 292	4.4e-40	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003960)

Species	Orthologous Gene IDs
malus_domestica	MD00G1097800.v1.1 MD01G1186500.v1.1 MD01G1186600.v1.1 MD01G1186800.v1.1 MD01G1187000.v1.1 MD01G1187100.v1.1 MD07G1258600.v1.1 MD07G1258700.v1.1 MD07G1258800.v1.1 MD07G1258900.v1.1 MD07G1259200.v1.1 MD07G1259300.v1.1
prunus_persica	Prupe.2G283200_v2.0.a1 Prupe.2G283300_v2.0.a1 Prupe.2G283400_v2.0.a1
pyrus_communis	pycom01g19810 pycom01g19820 pycom01g19840 pycom01g19900 pycom07g23170 pycom07g23230 pycom07g23240 pycom07g23250 pycom07g23260
rosa_chinensis	RchiOBHm_Chr1g0375241
rosa_laevigata	RLG00000026676
rosa_multiflora	Rmu_co8330553.1_g000001 Rmu_sc0000554.1_g000032
rosa_roxburghii	Rroxscaffold_4G00282910
rosa_rugosa	Rorug01G0389400
rosa_samantha	Rh1AG400100 Rh1BG364400 Rh1DG395000
rosa_wichuraiana	Rw1G035520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	841
AccB7I	CCANNNNNTGG	1 cut(s)	932
AciI	CCGC	3 cut(s)	193, 214, 512
AclWI	GGATC	5 cut(s)	141, 338, 829, 917, 930
AcoI	YGGCCR	1 cut(s)	165
AcsI	RAATTY	2 cut(s)	518, 766
AcuI	CTGAAG	1 cut(s)	854
AfaI	GTAC	2 cut(s)	59, 305
AfiI	CCNNNNNNNGG	2 cut(s)	835, 932
AflII	CTTAAG	1 cut(s)	61
AgsI	TTSAA	9 cut(s)	394, 431, 449, 507, 541, 576, 584, 637, 647
AjnI	CCWGG	1 cut(s)	129
AjuI	GAANNNNNNNTTGG	2 cut(s)	556, 588
AluBI	AGCT	7 cut(s)	181, 190, 337, 367, 670, 700, 739
AluI	AGCT	7 cut(s)	181, 190, 337, 367, 670, 700, 739
AlwI	GGATC	5 cut(s)	141, 338, 829, 917, 930
Ama87I	CYCGRG	2 cut(s)	746, 994
AoxI	GGCC	4 cut(s)	165, 204, 934, 991
ApeKI	GCWGC	4 cut(s)	190, 364, 697, 700
ApoI	RAATTY	2 cut(s)	518, 766
Asp700I	GAANNNNTTC	1 cut(s)	522
AspS9I	GGNCC	2 cut(s)	935, 992
AsuHPI	GGTGA	2 cut(s)	434, 613
AsuII	TTCGAA	1 cut(s)	673
AvaI	CYCGRG	2 cut(s)	746, 994
BamHI	GGATCC	1 cut(s)	922
BanI	GGYRCC	1 cut(s)	841
BbvI	GCAGC	4 cut(s)	177, 376, 687, 709
BccI	CCATC	4 cut(s)	398, 683, 853, 867
BciT130I	CCWGG	1 cut(s)	131
BclI	TGATCA	1 cut(s)	774
BfaI	CTAG	1 cut(s)	455
BfrI	CTTAAG	1 cut(s)	61
BisI	GCNGC	5 cut(s)	191, 194, 365, 698, 701
BlsI	GCNGC	5 cut(s)	192, 195, 366, 699, 702
Bme1390I	CCNGG	1 cut(s)	131
BmeT110I	CYCGRG	2 cut(s)	746, 994
BmgT120I	GGNCC	2 cut(s)	935, 992
BmiI	GGNNCC	2 cut(s)	843, 924
BmrFI	CCNGG	1 cut(s)	131
BmrI	ACTGGG	1 cut(s)	359
BmsI	GCATC	4 cut(s)	205, 252, 269, 861
BmuI	ACTGGG	1 cut(s)	359
Bpu14I	TTCGAA	1 cut(s)	673
BsaBI	GATNNNNATC	1 cut(s)	45
BsaJI	CCNNGG	1 cut(s)	129
Bsc4I	CCNNNNNNNGG	2 cut(s)	835, 932
Bse118I	RCCGGY	1 cut(s)	163
Bse1I	ACTGG	2 cut(s)	354, 950
Bse8I	GATNNNNATC	1 cut(s)	45
BseBI	CCWGG	1 cut(s)	131
BseDI	CCNNGG	1 cut(s)	129
BseGI	GGATG	2 cut(s)	284, 852
BseJI	GATNNNNATC	1 cut(s)	45
BseLI	CCNNNNNNNGG	2 cut(s)	835, 932
BseMII	CTCAG	2 cut(s)	59, 863
BseNI	ACTGG	2 cut(s)	354, 950
BseRI	GAGGAG	1 cut(s)	267
BseXI	GCAGC	4 cut(s)	177, 376, 687, 709
BsgI	GTGCAG	1 cut(s)	716
BshFI	GGCC	4 cut(s)	167, 206, 936, 993
BshNI	GGYRCC	1 cut(s)	841
BsiHKCI	CYCGRG	2 cut(s)	746, 994
BsiSI	CCGG	1 cut(s)	164
BslI	CCNNNNNNNGG	2 cut(s)	835, 932
BsmI	GAATGC	1 cut(s)	1057
BsnI	GGCC	4 cut(s)	167, 206, 936, 993
BsoBI	CYCGRG	2 cut(s)	746, 994
Bsp119I	TTCGAA	1 cut(s)	673
Bsp143I	GATC	7 cut(s)	133, 171, 330, 490, 774, 821, 922
BspACI	CCGC	3 cut(s)	193, 214, 512
BspANI	GGCC	4 cut(s)	167, 206, 936, 993
BspCNI	CTCAG	2 cut(s)	60, 864
BspLI	GGNNCC	2 cut(s)	843, 924
BspPI	GGATC	5 cut(s)	141, 338, 829, 917, 930
BspT104I	TTCGAA	1 cut(s)	673
BspT107I	GGYRCC	1 cut(s)	841
BspTI	CTTAAG	1 cut(s)	61
BsrFI	RCCGGY	1 cut(s)	163
BsrI	ACTGG	2 cut(s)	354, 950
BssAI	RCCGGY	1 cut(s)	163
BssECI	CCNNGG	1 cut(s)	129
BssMI	GATC	7 cut(s)	133, 171, 330, 490, 774, 821, 922
Bst2UI	CCWGG	1 cut(s)	131
Bst4CI	ACNGT	4 cut(s)	144, 558, 974, 1023
Bst6I	CTCTTC	1 cut(s)	804
BstAFI	CTTAAG	1 cut(s)	61
BstBI	TTCGAA	1 cut(s)	673
BstC8I	GCNNGC	1 cut(s)	695
BstDEI	CTNAG	4 cut(s)	68, 121, 731, 872
BstF5I	GGATG	2 cut(s)	284, 852
BstKTI	GATC	7 cut(s)	136, 174, 333, 493, 777, 824, 925
BstMBI	GATC	7 cut(s)	133, 171, 330, 490, 774, 821, 922
BstMWI	GCNNNNNNNGC	1 cut(s)	187
BstNI	CCWGG	1 cut(s)	131
BstNSI	RCATGY	1 cut(s)	898
BstSCI	CCNGG	1 cut(s)	129
BstV1I	GCAGC	4 cut(s)	177, 376, 687, 709
BstX2I	RGATCY	3 cut(s)	133, 821, 922
BstXI	CCANNNNNNTGG	1 cut(s)	945
BstYI	RGATCY	3 cut(s)	133, 821, 922
BsuRI	GGCC	4 cut(s)	167, 206, 936, 993
BtsCI	GGATG	2 cut(s)	284, 852
BtsIMutI	CAGTG	2 cut(s)	770, 830
Cac8I	GCNNGC	1 cut(s)	695
Cfr10I	RCCGGY	1 cut(s)	163
Cfr13I	GGNCC	2 cut(s)	935, 992
CseI	GACGC	1 cut(s)	14
Csp6I	GTAC	2 cut(s)	58, 304
CviAII	CATG	7 cut(s)	226, 238, 266, 323, 895, 968, 1007
CviQI	GTAC	2 cut(s)	58, 304
DdeI	CTNAG	4 cut(s)	68, 121, 731, 872
DpnI	GATC	7 cut(s)	135, 173, 332, 492, 776, 823, 924
DpnII	GATC	7 cut(s)	133, 171, 330, 490, 774, 821, 922
EaeI	YGGCCR	1 cut(s)	165
Eam1104I	CTCTTC	1 cut(s)	804
EarI	CTCTTC	1 cut(s)	804
EciI	GGCGGA	1 cut(s)	501
Eco32I	GATATC	1 cut(s)	878
Eco57I	CTGAAG	1 cut(s)	854
Eco88I	CYCGRG	2 cut(s)	746, 994
EcoRII	CCWGG	1 cut(s)	129
EcoRV	GATATC	1 cut(s)	878
EcoT22I	ATGCAT	1 cut(s)	267
FaeI	CATG	7 cut(s)	229, 241, 269, 326, 898, 971, 1010
FatI	CATG	7 cut(s)	225, 237, 265, 322, 894, 967, 1006
FbaI	TGATCA	1 cut(s)	774
Fnu4HI	GCNGC	5 cut(s)	191, 194, 365, 698, 701
FokI	GGATG	2 cut(s)	291, 839
Fsp4HI	GCNGC	5 cut(s)	191, 194, 365, 698, 701
FspBI	CTAG	1 cut(s)	455
GluI	GCNGC	5 cut(s)	191, 194, 365, 698, 701
HaeIII	GGCC	4 cut(s)	167, 206, 936, 993
HapII	CCGG	1 cut(s)	164
HgaI	GACGC	1 cut(s)	14
Hin1II	CATG	7 cut(s)	229, 241, 269, 326, 898, 971, 1010
HindIII	AAGCTT	1 cut(s)	179
HinfI	GANTC	6 cut(s)	98, 319, 439, 449, 626, 1028
HpaII	CCGG	1 cut(s)	164
HphI	GGTGA	2 cut(s)	434, 613
Hpy188I	TCNGA	6 cut(s)	27, 596, 726, 866, 873, 1033
Hpy188III	TCNNGA	2 cut(s)	52, 95
HpyAV	CCTTC	6 cut(s)	263, 535, 653, 707, 829, 895
HpyCH4III	ACNGT	4 cut(s)	144, 558, 974, 1023
HpyCH4IV	ACGT	2 cut(s)	56, 397
HpyCH4V	TGCA	8 cut(s)	115, 237, 265, 295, 467, 697, 703, 911
HpyF10VI	GCNNNNNNNGC	1 cut(s)	187
HpyF3I	CTNAG	4 cut(s)	68, 121, 731, 872
HpySE526I	ACGT	2 cut(s)	56, 397
Hsp92II	CATG	7 cut(s)	229, 241, 269, 326, 898, 971, 1010
Ksp22I	TGATCA	1 cut(s)	774
Kzo9I	GATC	7 cut(s)	133, 171, 330, 490, 774, 821, 922
LmnI	GCTCC	3 cut(s)	13, 667, 736
Lsp1109I	GCAGC	4 cut(s)	177, 376, 687, 709
LweI	GCATC	4 cut(s)	205, 252, 269, 861
MaeI	CTAG	1 cut(s)	455
MaeII	ACGT	2 cut(s)	56, 397
MaeIII	GTNAC	1 cut(s)	980
MalI	GATC	7 cut(s)	135, 173, 332, 492, 776, 823, 924
MboI	GATC	7 cut(s)	133, 171, 330, 490, 774, 821, 922
MboII	GAAGA	5 cut(s)	271, 413, 488, 572, 791
MflI	RGATCY	3 cut(s)	133, 821, 922
MluCI	AATT	4 cut(s)	299, 389, 518, 766
MlyI	GAGTC	1 cut(s)	92
MmeI	TCCRAC	3 cut(s)	256, 548, 645
MnlI	CCTC	9 cut(s)	245, 307, 320, 354, 703, 710, 752, 807, 832
Mph1103I	ATGCAT	1 cut(s)	267
MroXI	GAANNNNTTC	1 cut(s)	522
MseI	TTAA	4 cut(s)	62, 186, 461, 954
MslI	CAYNNNNRTG	1 cut(s)	270
MspA1I	CMGCKG	1 cut(s)	700
MspCI	CTTAAG	1 cut(s)	61
MspI	CCGG	1 cut(s)	164
MspR9I	CCNGG	1 cut(s)	131
Mva1269I	GAATGC	1 cut(s)	1057
MvaI	CCWGG	1 cut(s)	131
MwoI	GCNNNNNNNGC	1 cut(s)	187
NdeII	GATC	7 cut(s)	133, 171, 330, 490, 774, 821, 922
NlaIII	CATG	7 cut(s)	229, 241, 269, 326, 898, 971, 1010
NlaIV	GGNNCC	2 cut(s)	843, 924
NsiI	ATGCAT	1 cut(s)	267
NspI	RCATGY	1 cut(s)	898
NspV	TTCGAA	1 cut(s)	673
PcsI	WCGNNNNNNNCGW	1 cut(s)	1046
PctI	GAATGC	1 cut(s)	1057
PdmI	GAANNNNTTC	1 cut(s)	522
PfeI	GAWTC	5 cut(s)	319, 439, 449, 626, 1028
PflMI	CCANNNNNTGG	1 cut(s)	932
PkrI	GCNGC	5 cut(s)	192, 195, 366, 699, 702
PleI	GAGTC	1 cut(s)	92
PpsI	GAGTC	1 cut(s)	92
Psp6I	CCWGG	1 cut(s)	129
PspGI	CCWGG	1 cut(s)	129
PspN4I	GGNNCC	2 cut(s)	843, 924
PspPI	GGNCC	2 cut(s)	935, 992
PsuI	RGATCY	3 cut(s)	133, 821, 922
PvuII	CAGCTG	1 cut(s)	700
RsaI	GTAC	2 cut(s)	59, 305
RsaNI	GTAC	2 cut(s)	58, 304
RseI	CAYNNNNRTG	1 cut(s)	270
SaqAI	TTAA	4 cut(s)	62, 186, 461, 954
SatI	GCNGC	5 cut(s)	191, 194, 365, 698, 701
Sau3AI	GATC	7 cut(s)	133, 171, 330, 490, 774, 821, 922
Sau96I	GGNCC	2 cut(s)	935, 992
SchI	GAGTC	1 cut(s)	92
ScrFI	CCNGG	1 cut(s)	131
SfaNI	GCATC	4 cut(s)	205, 252, 269, 861
SfuI	TTCGAA	1 cut(s)	673
SmiMI	CAYNNNNRTG	1 cut(s)	270
SmlI	CTYRAG	1 cut(s)	61
SmoI	CTYRAG	1 cut(s)	61
Sse9I	AATT	4 cut(s)	299, 389, 518, 766
SsiI	CCGC	3 cut(s)	193, 214, 512
SspMI	CTAG	1 cut(s)	455
StyD4I	CCNGG	1 cut(s)	129
TaaI	ACNGT	4 cut(s)	144, 558, 974, 1023
TaiI	ACGT	2 cut(s)	59, 400
TaqI	TCGA	2 cut(s)	673, 1049
TaqII	GACCGA	1 cut(s)	516
TasI	AATT	4 cut(s)	299, 389, 518, 766
TatI	WGTACW	1 cut(s)	303
TauI	GCSGC	1 cut(s)	196
TfiI	GAWTC	5 cut(s)	319, 439, 449, 626, 1028
Tru1I	TTAA	4 cut(s)	62, 186, 461, 954
Tru9I	TTAA	4 cut(s)	62, 186, 461, 954
TscAI	CASTG	2 cut(s)	777, 837
TseI	GCWGC	4 cut(s)	190, 364, 697, 700
TspDTI	ATGAA	5 cut(s)	254, 282, 452, 495, 1023
TspRI	CASTG	2 cut(s)	777, 837
Van91I	CCANNNNNTGG	1 cut(s)	932
Vha464I	CTTAAG	1 cut(s)	61
XapI	RAATTY	2 cut(s)	518, 766
XceI	RCATGY	1 cut(s)	898
XmnI	GAANNNNTTC	1 cut(s)	522
XspI	CTAG	1 cut(s)	455
Zsp2I	ATGCAT	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.