RLG00000026676

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Forward (+)
4816129 .. 4818219
2091 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026676

Sequence Viewer

Length: 1662 bp
ATGGTTAAAAAATGTGAAGGGTTACCTTTGGCAATCGTTTCTCTAGGTGGTCTTCTGTCAACCAAAGCTAAAGTTTTATCTGAATGGAAAAAGTTGTACAACAGCCTCAGCTCAGAGTTGGAAAGTAATCCCCATCTCTCAAGCCTCACAAGAATCTTATCCCTTAGCTATCATCATCTACCATATTACCTCAAATCCTGTGTTTTGTACTTTGGCATATTTCCTGAGGATTACTCAATTAGCTGCATAAGACTAGTACGATTGTGGATAGCTGAAGGCTTTGTCAAAGTGACAAAGGGGAAGACATTGGAGGAGGTTGCGGAGGGATATTTGAATGAGCTAATCCATAGAAGCCTGGTTCAAGTATCAAAAGTTTACATTGATGGAAAAGCCAGAAACTGCCGAGTTCATGACCTCTTGCGTGAAGTCTTCCTTAGAAAGGCATTGGATTCGAGCTTCTGTCACTTGTTATCAGAAGATGAGTCTACTTTTATTCCAACCACTCGACGCCTCTCCATAGACAGCAGCCTCTCTGATGTGTTGGGAAGCATAAGCATCGAACAGTCTCATATCCGTTCTGTTTTTACTTTCAACAAAGATGACTGGCCGAAGTACTCTTTTCTCAATACAATCAGTGCAAACTTTAAGCTTCTGAAGGTATTGGATTTTGCAGATGCTCCAATACAGCATTTTCCTAAGTATGTGGGGAGTTTATACTACTTGAGGTACTTAAGTCTACGTAATACAAAGGTGAAGCTGCTGCCAAAATCCATAGCTAAGCTGCAAAATTTAGAAACCCTGGATCTAAAACAGTCTCTTGTGTGTGAAATACCAGCAAAGCTCAATAAGCTTCTTAAATTGCGACATATTTTGGCCTGCTATTGTGACAACGAGATAGACTTTAGCATGAGTTATGAACGTGGAGTGAAGATAAATGATGGTGTAGGGTGCTTACTAGCTTTGCAAAAGCTATACCATGTGGATGCAAACCATGGAGGGATCAGGTTAATTCAAGAACTGAGAAAGTTAAGGCAGCTGAGAAAGTTAGGCCTAAAGAACTTGAGAAGTGAAGATGGACAGGCTTTTTGTGCTTCTATTGAAAACATGAACCTCCTTGAATCTCTAGAAGTATGCGCAATGAGCGAGGATGAAGTCCTTGATGTACAGTACATTTCAGCTCCACCAGAATCCATTCGGTTTCTCTACTTGAAGGGGCGTCTAGAGAAGTTACCGAGTTGGATTTCTAAGCTAGAGCATGTAGTCAAGTTGAGGATTTTCTGGTCAAGGTTAAGAGATGACCCACTAAAAGCCCTTCAAAATCTGCCCAACTTGTTGGAGCTTGGACTCTCATACAAGGCATATGACGGGGTGCAGCTGCATTTTGAGGAAGGAGGATTTCAGAAACTGAAGTTGCTAAAACTCAAGCACTTGGAGGGACTAAATTCACTGATTATTGACGATGGGGTTATGCCTCTTCTCCAAGAGCTACAACTTGGGCCTTCACCACAACTGAAGGAGGTTCCCTCTGGAATCCACCACTTGAGAGATCTAAGAACTCTTAGATTTGTTGACATGCCTGAAGCTTTCAGACGTGGAATGGATGGCCAGCATTATTGGGTTGTTGAGCATGTAACGGATGTTCTCTTTAGGGTCAAGGTGTGA

Protein Analysis

554

Amino Acids

63.4

Weight (kDa)

8.86

Isoelectric Point (pI)

45.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WHD_DRP PF23559 73 - 142 1e-23 Disease resistance protein Winged helix domain
LRR_14 PF23598 190 - 522 1.4e-44 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1135
AccI GTMKAC 2 cut(s) 485, 736
AciI CCGC 1 cut(s) 320
AclWI GGATC 2 cut(s) 810, 1007
AcoI YGGCCR 2 cut(s) 605, 1603
AcsI RAATTY 2 cut(s) 787, 1441
AcuI CTGAAG 5 cut(s) 294, 674, 1427, 1532, 1599
AcyI GRCGYC 2 cut(s) 508, 1216
AfaI GTAC 7 cut(s) 98, 209, 258, 614, 728, 1164, 1169
AfiI CCNNNNNNNGG 1 cut(s) 439
AflII CTTAAG 1 cut(s) 730
AgsI TTSAA 8 cut(s) 334, 362, 592, 1013, 1100, 1118, 1210, 1316
AhlI ACTAGT 1 cut(s) 253
AjiI CACGTC 1 cut(s) 1592
AjnI CCWGG 2 cut(s) 354, 798
Alw26I GTCTC 2 cut(s) 570, 819
AlwI GGATC 2 cut(s) 810, 1007
AlwNI CAGNNNCTG 2 cut(s) 399, 1405
AoxI GGCC 5 cut(s) 605, 873, 1048, 1496, 1603
ApeKI GCWGC 8 cut(s) 243, 525, 757, 760, 781, 1033, 1372, 1375
ApoI RAATTY 2 cut(s) 787, 1441
ArsI GACNNNNNNTTYG 2 cut(s) 1068, 1100
Asp700I GAANNNNTTC 1 cut(s) 1191
AspLEI GCGC 1 cut(s) 1136
AspS9I GGNCC 1 cut(s) 1496
AsuHPI GGTGA 2 cut(s) 763, 1494
AxyI CCTNAGG 1 cut(s) 225
BaeI ACNNNNGTAYC 2 cut(s) 718, 751
BalI TGGCCA 1 cut(s) 1605
BbsI GAAGAC 3 cut(s) 44, 308, 421
BbvCI CCTCAGC 1 cut(s) 107
BbvI GCAGC 8 cut(s) 230, 537, 744, 747, 768, 1045, 1362, 1384
BccI CCATC 6 cut(s) 141, 377, 932, 1067, 1454, 1595
BcgI CGANNNNNNTGC 4 cut(s) 432, 466, 538, 572
BciT130I CCWGG 2 cut(s) 356, 800
BcoDI GTCTC 2 cut(s) 570, 819
BcuI ACTAGT 1 cut(s) 253
BfaI CTAG 6 cut(s) 44, 254, 956, 1124, 1220, 1250
BfrI CTTAAG 1 cut(s) 730
BglII AGATCT 1 cut(s) 1546
BisI GCNGC 8 cut(s) 244, 526, 758, 761, 782, 1034, 1373, 1376
BlpI GCTNAGC 1 cut(s) 777
BlsI GCNGC 8 cut(s) 245, 527, 759, 762, 783, 1035, 1374, 1377
BmcAI AGTACT 1 cut(s) 614
Bme1390I CCNGG 2 cut(s) 356, 800
BmgBI CACGTC 1 cut(s) 1592
BmgT120I GGNCC 1 cut(s) 1496
BmiI GGNNCC 1 cut(s) 1521
BmrFI CCNGG 2 cut(s) 356, 800
BmsI GCATC 3 cut(s) 564, 664, 973
BpiI GAAGAC 3 cut(s) 44, 308, 421
BplI GAGNNNNNCTC 4 cut(s) 218, 250, 1508, 1540
Bpu10I CCTNAGC 2 cut(s) 107, 164
Bpu1102I GCTNAGC 1 cut(s) 777
BpuEI CTTGAG 5 cut(s) 124, 742, 1081, 1406, 1561
BsaAI YACGTR 1 cut(s) 740
BsaHI GRCGYC 2 cut(s) 508, 1216
BsaJI CCNNGG 2 cut(s) 798, 991
Bsc4I CCNNNNNNNGG 1 cut(s) 439
Bse1I ACTGG 1 cut(s) 608
Bse21I CCTNAGG 1 cut(s) 225
Bse3DI GCAATG 1 cut(s) 1143
BseBI CCWGG 2 cut(s) 356, 800
BseDI CCNNGG 2 cut(s) 798, 991
BseGI GGATG 4 cut(s) 988, 1153, 1606, 1642
BseLI CCNNNNNNNGG 1 cut(s) 439
BseMI GCAATG 1 cut(s) 1143
BseMII CTCAG 5 cut(s) 121, 126, 216, 1010, 1028
BseNI ACTGG 1 cut(s) 608
BseRI GAGGAG 1 cut(s) 326
BseXI GCAGC 8 cut(s) 230, 537, 744, 747, 768, 1045, 1362, 1384
BsgI GTGCAG 1 cut(s) 1391
BshFI GGCC 5 cut(s) 607, 875, 1050, 1498, 1605
BslFI GGGAC 1 cut(s) 1449
BslI CCNNNNNNNGG 1 cut(s) 439
BsmAI GTCTC 2 cut(s) 570, 819
BsmFI GGGAC 1 cut(s) 1449
BsnI GGCC 5 cut(s) 607, 875, 1050, 1498, 1605
Bsp1407I TGTACA 2 cut(s) 96, 1162
Bsp143I GATC 3 cut(s) 802, 999, 1546
Bsp1720I GCTNAGC 1 cut(s) 777
Bsp19I CCATGG 1 cut(s) 991
BspACI CCGC 1 cut(s) 320
BspANI GGCC 5 cut(s) 607, 875, 1050, 1498, 1605
BspCNI CTCAG 5 cut(s) 120, 125, 217, 1011, 1029
BspHI TCATGA 1 cut(s) 409
BspLI GGNNCC 1 cut(s) 1521
BspPI GGATC 2 cut(s) 810, 1007
BspTI CTTAAG 1 cut(s) 730
BsrDI GCAATG 1 cut(s) 1143
BsrGI TGTACA 2 cut(s) 96, 1162
BsrI ACTGG 1 cut(s) 608
BssECI CCNNGG 2 cut(s) 798, 991
BssMI GATC 3 cut(s) 802, 999, 1546
BssNI GRCGYC 2 cut(s) 508, 1216
BssT1I CCWWGG 1 cut(s) 991
Bst2UI CCWGG 2 cut(s) 356, 800
Bst4CI ACNGT 3 cut(s) 564, 813, 1167
Bst6I CTCTTC 1 cut(s) 1479
BstACI GRCGYC 2 cut(s) 508, 1216
BstAFI CTTAAG 1 cut(s) 730
BstAUI TGTACA 2 cut(s) 96, 1162
BstBAI YACGTR 1 cut(s) 740
BstC8I GCNNGC 2 cut(s) 877, 1607
BstDSI CCRYGG 1 cut(s) 991
BstEII GGTNACC 1 cut(s) 21
BstENI CCTNNNNNAGG 1 cut(s) 437
BstF5I GGATG 4 cut(s) 988, 1153, 1606, 1642
BstHHI GCGC 1 cut(s) 1136
BstKTI GATC 3 cut(s) 805, 1002, 1549
BstMAI GTCTC 2 cut(s) 570, 819
BstMBI GATC 3 cut(s) 802, 999, 1546
BstMWI GCNNNNNNNGC 3 cut(s) 847, 1088, 1140
BstNI CCWGG 2 cut(s) 356, 800
BstNSI RCATGY 3 cut(s) 1259, 1576, 1631
BstPI GGTNACC 1 cut(s) 21
BstSCI CCNGG 2 cut(s) 354, 798
BstSNI TACGTA 1 cut(s) 740
BstV1I GCAGC 8 cut(s) 230, 537, 744, 747, 768, 1045, 1362, 1384
BstV2I GAAGAC 3 cut(s) 44, 308, 421
BstX2I RGATCY 2 cut(s) 802, 1546
BstXI CCANNNNNNTGG 1 cut(s) 1333
BstYI RGATCY 2 cut(s) 802, 1546
Bsu36I CCTNAGG 1 cut(s) 225
BsuRI GGCC 5 cut(s) 607, 875, 1050, 1498, 1605
BtgI CCRYGG 1 cut(s) 991
BtrI CACGTC 1 cut(s) 1592
BtsCI GGATG 4 cut(s) 988, 1153, 1606, 1642
BtsIMutI CAGTG 2 cut(s) 640, 1445
Cac8I GCNNGC 2 cut(s) 877, 1607
CaiI CAGNNNCTG 2 cut(s) 399, 1405
CciI TCATGA 1 cut(s) 409
CfoI GCGC 1 cut(s) 1136
Cfr13I GGNCC 1 cut(s) 1496
CseI GACGC 2 cut(s) 516, 1205
Csp6I GTAC 7 cut(s) 97, 208, 257, 613, 727, 1163, 1168
CviAII CATG 8 cut(s) 410, 907, 977, 992, 1105, 1256, 1573, 1628
CviQI GTAC 7 cut(s) 97, 208, 257, 613, 727, 1163, 1168
DpnI GATC 3 cut(s) 804, 1001, 1548
DpnII GATC 3 cut(s) 802, 999, 1546
EaeI YGGCCR 2 cut(s) 605, 1603
Eam1104I CTCTTC 1 cut(s) 1479
EarI CTCTTC 1 cut(s) 1479
Eco105I TACGTA 1 cut(s) 740
Eco130I CCWWGG 1 cut(s) 991
Eco147I AGGCCT 1 cut(s) 1050
Eco57I CTGAAG 5 cut(s) 294, 674, 1427, 1532, 1599
Eco81I CCTNAGG 1 cut(s) 225
Eco91I GGTNACC 1 cut(s) 21
EcoNI CCTNNNNNAGG 1 cut(s) 437
EcoO65I GGTNACC 1 cut(s) 21
EcoRII CCWGG 2 cut(s) 354, 798
EcoT14I CCWWGG 1 cut(s) 991
ErhI CCWWGG 1 cut(s) 991
FaeI CATG 8 cut(s) 413, 910, 980, 995, 1108, 1259, 1576, 1631
FalI AAGNNNNNCTT 2 cut(s) 417, 449
FaqI GGGAC 1 cut(s) 1449
FatI CATG 8 cut(s) 409, 906, 976, 991, 1104, 1255, 1572, 1627
FauNDI CATATG 1 cut(s) 1360
FblI GTMKAC 2 cut(s) 485, 736
Fnu4HI GCNGC 8 cut(s) 244, 526, 758, 761, 782, 1034, 1373, 1376
FokI GGATG 4 cut(s) 995, 1160, 1613, 1649
Fsp4HI GCNGC 8 cut(s) 244, 526, 758, 761, 782, 1034, 1373, 1376
FspBI CTAG 6 cut(s) 44, 254, 956, 1124, 1220, 1250
FspI TGCGCA 1 cut(s) 1135
GlaI GCGC 1 cut(s) 1135
GluI GCNGC 8 cut(s) 244, 526, 758, 761, 782, 1034, 1373, 1376
HaeIII GGCC 5 cut(s) 607, 875, 1050, 1498, 1605
HgaI GACGC 2 cut(s) 516, 1205
HhaI GCGC 1 cut(s) 1136
Hin1I GRCGYC 2 cut(s) 508, 1216
Hin1II CATG 8 cut(s) 413, 910, 980, 995, 1108, 1259, 1576, 1631
Hin6I GCGC 1 cut(s) 1134
HinP1I GCGC 1 cut(s) 1134
HincII GTYRAC 2 cut(s) 60, 1570
HindII GTYRAC 2 cut(s) 60, 1570
HindIII AAGCTT 3 cut(s) 647, 848, 1581
HinfI GANTC 7 cut(s) 153, 449, 482, 1118, 1187, 1344, 1530
HphI GGTGA 2 cut(s) 763, 1494
Hpy166II GTNNAC 5 cut(s) 60, 376, 486, 737, 1570
Hpy188I TCNGA 7 cut(s) 82, 115, 475, 535, 654, 1401, 1589
Hpy188III TCNNGA 6 cut(s) 224, 410, 1013, 1124, 1220, 1527
Hpy8I GTNNAC 5 cut(s) 60, 376, 486, 737, 1570
Hpy99I CGWCG 1 cut(s) 510
HpyAV CCTTC 8 cut(s) 11, 269, 649, 1204, 1322, 1382, 1507, 1509
HpyCH4III ACNGT 3 cut(s) 564, 813, 1167
HpyCH4IV ACGT 3 cut(s) 739, 919, 1591
HpyCH4V TGCA 8 cut(s) 246, 638, 671, 784, 964, 986, 1372, 1378
HpyF10VI GCNNNNNNNGC 3 cut(s) 847, 1088, 1140
HpySE526I ACGT 3 cut(s) 739, 919, 1591
Hsp92I GRCGYC 2 cut(s) 508, 1216
Hsp92II CATG 8 cut(s) 413, 910, 980, 995, 1108, 1259, 1576, 1631
HspAI GCGC 1 cut(s) 1134
Kzo9I GATC 3 cut(s) 802, 999, 1546
LmnI GCTCC 3 cut(s) 682, 1183, 1336
Lsp1109I GCAGC 8 cut(s) 230, 537, 744, 747, 768, 1045, 1362, 1384
LweI GCATC 3 cut(s) 564, 664, 973
MaeI CTAG 6 cut(s) 44, 254, 956, 1124, 1220, 1250
MaeII ACGT 3 cut(s) 739, 919, 1591
MaeIII GTNAC 6 cut(s) 21, 289, 461, 884, 1227, 1630
MalI GATC 3 cut(s) 804, 1001, 1548
MboI GATC 3 cut(s) 802, 999, 1546
MboII GAAGA 7 cut(s) 44, 313, 421, 488, 940, 1082, 1466
MflI RGATCY 2 cut(s) 802, 1546
MlsI TGGCCA 1 cut(s) 1605
MluCI AATT 5 cut(s) 237, 787, 857, 1008, 1441
MluNI TGGCCA 1 cut(s) 1605
MlyI GAGTC 2 cut(s) 491, 1338
MmeI TCCRAC 4 cut(s) 99, 521, 1217, 1314
Mox20I TGGCCA 1 cut(s) 1605
MroXI GAANNNNTTC 1 cut(s) 1191
MscI TGGCCA 1 cut(s) 1605
MseI TTAA 7 cut(s) 6, 645, 731, 855, 1007, 1028, 1289
MslI CAYNNNNRTG 1 cut(s) 981
Msp20I TGGCCA 1 cut(s) 1605
MspA1I CMGCKG 2 cut(s) 1036, 1375
MspCI CTTAAG 1 cut(s) 730
MspR9I CCNGG 2 cut(s) 356, 800
MvaI CCWGG 2 cut(s) 356, 800
MwoI GCNNNNNNNGC 3 cut(s) 847, 1088, 1140
NcoI CCATGG 1 cut(s) 991
NdeI CATATG 1 cut(s) 1360
NdeII GATC 3 cut(s) 802, 999, 1546
NlaIII CATG 8 cut(s) 413, 910, 980, 995, 1108, 1259, 1576, 1631
NlaIV GGNNCC 1 cut(s) 1521
NmeAIII GCCGAG 1 cut(s) 428
NmuCI GTSAC 3 cut(s) 289, 461, 884
NsbI TGCGCA 1 cut(s) 1135
NspI RCATGY 3 cut(s) 1259, 1576, 1631
PagI TCATGA 1 cut(s) 409
PceI AGGCCT 1 cut(s) 1050
PdmI GAANNNNTTC 1 cut(s) 1191
PfeI GAWTC 5 cut(s) 153, 449, 1118, 1187, 1530
PkrI GCNGC 8 cut(s) 245, 527, 759, 762, 783, 1035, 1374, 1377
PleI GAGTC 2 cut(s) 490, 1338
PpsI GAGTC 2 cut(s) 490, 1338
Ppu21I YACGTR 1 cut(s) 740
Psp6I CCWGG 2 cut(s) 354, 798
PspEI GGTNACC 1 cut(s) 21
PspGI CCWGG 2 cut(s) 354, 798
PspN4I GGNNCC 1 cut(s) 1521
PspPI GGNCC 1 cut(s) 1496
PsrI GAACNNNNNNTAC 2 cut(s) 1623, 1655
PstNI CAGNNNCTG 2 cut(s) 399, 1405
PsuI RGATCY 2 cut(s) 802, 1546
PvuII CAGCTG 2 cut(s) 1036, 1375
RsaI GTAC 7 cut(s) 98, 209, 258, 614, 728, 1164, 1169
RsaNI GTAC 7 cut(s) 97, 208, 257, 613, 727, 1163, 1168
RseI CAYNNNNRTG 1 cut(s) 981
SaqAI TTAA 7 cut(s) 6, 645, 731, 855, 1007, 1028, 1289
SatI GCNGC 8 cut(s) 244, 526, 758, 761, 782, 1034, 1373, 1376
Sau3AI GATC 3 cut(s) 802, 999, 1546
Sau96I GGNCC 1 cut(s) 1496
ScaI AGTACT 1 cut(s) 614
SchI GAGTC 2 cut(s) 491, 1338
ScrFI CCNGG 2 cut(s) 356, 800
SfaNI GCATC 3 cut(s) 564, 664, 973
SmiMI CAYNNNNRTG 1 cut(s) 981
SmlI CTYRAG 6 cut(s) 139, 721, 730, 1060, 1421, 1540
SmoI CTYRAG 6 cut(s) 139, 721, 730, 1060, 1421, 1540
SnaBI TACGTA 1 cut(s) 740
SpeI ACTAGT 1 cut(s) 253
Sse9I AATT 5 cut(s) 237, 787, 857, 1008, 1441
SseBI AGGCCT 1 cut(s) 1050
SsiI CCGC 1 cut(s) 320
SspMI CTAG 6 cut(s) 44, 254, 956, 1124, 1220, 1250
StuI AGGCCT 1 cut(s) 1050
StyD4I CCNGG 2 cut(s) 354, 798
StyI CCWWGG 1 cut(s) 991
TaaI ACNGT 3 cut(s) 564, 813, 1167
TaiI ACGT 3 cut(s) 742, 922, 1594
TaqI TCGA 3 cut(s) 452, 505, 558
TasI AATT 5 cut(s) 237, 787, 857, 1008, 1441
TatI WGTACW 5 cut(s) 96, 207, 612, 1162, 1167
TfiI GAWTC 5 cut(s) 153, 449, 1118, 1187, 1530
Tru1I TTAA 7 cut(s) 6, 645, 731, 855, 1007, 1028, 1289
Tru9I TTAA 7 cut(s) 6, 645, 731, 855, 1007, 1028, 1289
TscAI CASTG 2 cut(s) 640, 1452
TseFI GTSAC 3 cut(s) 289, 461, 884
TseI GCWGC 8 cut(s) 243, 525, 757, 760, 781, 1033, 1372, 1375
Tsp45I GTSAC 3 cut(s) 289, 461, 884
TspDTI ATGAA 4 cut(s) 398, 930, 1121, 1164
TspGWI ACGGA 2 cut(s) 563, 1649
TspRI CASTG 2 cut(s) 640, 1452
Vha464I CTTAAG 1 cut(s) 730
XagI CCTNNNNNAGG 1 cut(s) 437
XapI RAATTY 2 cut(s) 787, 1441
XbaI TCTAGA 2 cut(s) 1123, 1219
XceI RCATGY 3 cut(s) 1259, 1576, 1631
XmiI GTMKAC 2 cut(s) 485, 736
XmnI GAANNNNTTC 1 cut(s) 1191
XspI CTAG 6 cut(s) 44, 254, 956, 1124, 1220, 1250
ZrmI AGTACT 1 cut(s) 614
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.