Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0003960

Physical Location & Seq

Genomic Coordinates Reverse (-)

62702887 .. 62704176

Gene Structure 1290 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG400100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1290 bp

ATGTTATCAGAAGATGAGTCTACTTTTACTCCAACCACTCGACGCCTCTCCATAGACAGCAGCCTCTCTGATGCGTTGGGAAGCATAAGCATCGAACAGTCTCATATCCGTTCTGTTTTTACTTTCAACCGAGATGAATGGCCCAACTACTCTTTTCTCAACACAATCAGTGCAAACTTTAAGCTTCTGAAGGTATTGGATTTTGCAGACGCTCCAATACAGCATCTTCCTAAGTATGTGGGGAGTTTATACTACTTGAGGTACTTAAGCCTACGTAATACAAAGGTGAAGCTGCTGCCAAAATCCATAGCTAAGCTGCAAAATTTGGAAACCCTGGATCTAAAACAGTCTCTTGTGTGTGAAATACCAGCAAAGCTCAATAAGCTTCTTAAGTTGCGACATATTTTGGCCTGCTATTGTGACTACAAGAAAAACTTTAGCATGAGTTACGAACGTGGAGTGATGATAAATGATGGTGTAGGGTGCTTACTAGCTTTGCAAAAGCTATACCATGTGGATGCAAACCATGGAGGGATCAGGCTAATTCAAGAACTGAGAAAGTTAAGGCAGCTGAGAAAGTTAGGCCTAAAGAACTTGAGAAGTGAAGATGGACAGGCTCTTTGTGCTTCTATTGAAAACATGAACCTCCTTGAATCTCTAGAAGTATGCGCAATGAGCGAGGATGAAGTCCTTGATGTACAGTACATTTCAACTCCACCAGAATCCATTCGGTTTCTCTACTTGAAGGGGCGTCTAGAGAAGTTACCGAGTTGGATTTCTAAGCTAGAGCATCTAGTCAAGTTGAGGATTTTCTGGTCAAGGTTAAGAGATGACCCACTAAAAGCCCTTCAAAATCTGCCCAACTTGTTGGAGCTTGGACTCTCATACAAGGCATATGACGGAGTGCAGCTGCATTTTGAGGAAGGAGGATTTCAGAAACTGAAGTTGCTAAAACTCAAGCACTTGGAGGGACTAAATTCACTGATTATTGACAATGGGGTTATGCCTCTTCTCCAAGAGCTACAACTTGGGCCTTCACCACAACTGAAGGAGGTTCCCTCTGGAATCCACCACTTGAGAGATCTAAGAACTCTTAGATTTGTTGACATGCCTGAAGCTTTCAGACGTGGAATGGATGGCCAGCATTATTGGATTGTAGAGCATGTTACGGATGTTCTCTTTAGTTACAAGCTCGGGCCGAGGTGTGACATATATGAAACTCACACACTGCTTCATTCCAATAGTTCTGCACCAGTCCCAACTAAGGAACGCATATATTTAGAGCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009626 GO:0009987 GO:0012501 GO:0016020 GO:0019897 GO:0019898 GO:0023052 GO:0033554 GO:0034050 GO:0036094 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

429

Amino Acids

49.34

Weight (kDa)

8.63

Isoelectric Point (pI)

46.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	35 - 366	4.6e-45	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003960)

Species	Orthologous Gene IDs
malus_domestica	MD00G1097800.v1.1 MD01G1186500.v1.1 MD01G1186600.v1.1 MD01G1186800.v1.1 MD01G1187000.v1.1 MD01G1187100.v1.1 MD07G1258600.v1.1 MD07G1258700.v1.1 MD07G1258800.v1.1 MD07G1258900.v1.1 MD07G1259200.v1.1 MD07G1259300.v1.1
prunus_persica	Prupe.2G283200_v2.0.a1 Prupe.2G283300_v2.0.a1 Prupe.2G283400_v2.0.a1
pyrus_communis	pycom01g19810 pycom01g19820 pycom01g19840 pycom01g19900 pycom07g23170 pycom07g23230 pycom07g23240 pycom07g23250 pycom07g23260
rosa_chinensis	RchiOBHm_Chr1g0375241
rosa_laevigata	RLG00000026676
rosa_multiflora	Rmu_co8330553.1_g000001 Rmu_sc0000554.1_g000032
rosa_roxburghii	Rroxscaffold_4G00282910
rosa_rugosa	Rorug01G0389400
rosa_samantha	Rh1AG400100 Rh1BG364400 Rh1DG395000
rosa_wichuraiana	Rw1G035520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	670
AccI	GTMKAC	1 cut(s)	20
AclWI	GGATC	2 cut(s)	345, 542
AcoI	YGGCCR	1 cut(s)	1138
AcsI	RAATTY	2 cut(s)	322, 976
AcuI	CTGAAG	4 cut(s)	209, 962, 1067, 1134
AcyI	GRCGYC	2 cut(s)	43, 751
AfaI	GTAC	3 cut(s)	263, 699, 704
AfiI	CCNNNNNNNGG	1 cut(s)	1264
AflII	CTTAAG	2 cut(s)	265, 389
AgsI	TTSAA	7 cut(s)	127, 548, 635, 653, 711, 745, 851
AjiI	CACGTC	1 cut(s)	1127
AjnI	CCWGG	1 cut(s)	333
Alw26I	GTCTC	2 cut(s)	105, 354
AlwI	GGATC	2 cut(s)	345, 542
AlwNI	CAGNNNCTG	1 cut(s)	940
Ama87I	CYCGRG	1 cut(s)	1193
AoxI	GGCC	6 cut(s)	140, 408, 583, 1031, 1138, 1196
ApeKI	GCWGC	7 cut(s)	60, 292, 295, 316, 568, 907, 910
ApoI	RAATTY	2 cut(s)	322, 976
ArsI	GACNNNNNNTTYG	2 cut(s)	603, 635
Asp700I	GAANNNNTTC	1 cut(s)	726
AspLEI	GCGC	1 cut(s)	671
AspS9I	GGNCC	3 cut(s)	141, 1031, 1196
AsuHPI	GGTGA	2 cut(s)	298, 1029
AvaI	CYCGRG	1 cut(s)	1193
BalI	TGGCCA	1 cut(s)	1140
BbvI	GCAGC	7 cut(s)	72, 279, 282, 303, 580, 897, 919
BccI	CCATC	3 cut(s)	467, 602, 1130
BcgI	CGANNNNNNTGC	2 cut(s)	73, 107
BciT130I	CCWGG	1 cut(s)	335
BcoDI	GTCTC	2 cut(s)	105, 354
BfaI	CTAG	5 cut(s)	491, 659, 755, 785, 794
BfrI	CTTAAG	2 cut(s)	265, 389
BglII	AGATCT	1 cut(s)	1081
BisI	GCNGC	7 cut(s)	61, 293, 296, 317, 569, 908, 911
BlpI	GCTNAGC	1 cut(s)	312
BlsI	GCNGC	7 cut(s)	62, 294, 297, 318, 570, 909, 912
Bme1390I	CCNGG	1 cut(s)	335
BmeT110I	CYCGRG	1 cut(s)	1193
BmgBI	CACGTC	1 cut(s)	1127
BmgT120I	GGNCC	3 cut(s)	141, 1031, 1196
BmiI	GGNNCC	1 cut(s)	1056
BmrFI	CCNGG	1 cut(s)	335
BmsI	GCATC	5 cut(s)	61, 99, 232, 508, 799
BplI	GAGNNNNNCTC	2 cut(s)	1043, 1075
Bpu1102I	GCTNAGC	1 cut(s)	312
BpuEI	CTTGAG	4 cut(s)	277, 616, 941, 1096
BsaAI	YACGTR	1 cut(s)	275
BsaHI	GRCGYC	2 cut(s)	43, 751
BsaJI	CCNNGG	3 cut(s)	333, 526, 1199
BsaXI	ACNNNNNCTCC	2 cut(s)	13, 43
Bsc4I	CCNNNNNNNGG	1 cut(s)	1264
Bse1I	ACTGG	1 cut(s)	1253
Bse3DI	GCAATG	1 cut(s)	678
BseBI	CCWGG	1 cut(s)	335
BseDI	CCNNGG	3 cut(s)	333, 526, 1199
BseGI	GGATG	4 cut(s)	523, 688, 1141, 1177
BseLI	CCNNNNNNNGG	1 cut(s)	1264
BseMI	GCAATG	1 cut(s)	678
BseMII	CTCAG	2 cut(s)	545, 563
BseNI	ACTGG	1 cut(s)	1253
BseXI	GCAGC	7 cut(s)	72, 279, 282, 303, 580, 897, 919
BsgI	GTGCAG	2 cut(s)	926, 1233
BshFI	GGCC	6 cut(s)	142, 410, 585, 1033, 1140, 1198
BsiHKCI	CYCGRG	1 cut(s)	1193
BslFI	GGGAC	2 cut(s)	984, 1241
BslI	CCNNNNNNNGG	1 cut(s)	1264
BsmAI	GTCTC	2 cut(s)	105, 354
BsmFI	GGGAC	2 cut(s)	984, 1241
BsnI	GGCC	6 cut(s)	142, 410, 585, 1033, 1140, 1198
BsoBI	CYCGRG	1 cut(s)	1193
Bsp1407I	TGTACA	1 cut(s)	697
Bsp143I	GATC	3 cut(s)	337, 534, 1081
Bsp1720I	GCTNAGC	1 cut(s)	312
Bsp19I	CCATGG	1 cut(s)	526
BspANI	GGCC	6 cut(s)	142, 410, 585, 1033, 1140, 1198
BspCNI	CTCAG	2 cut(s)	546, 564
BspLI	GGNNCC	1 cut(s)	1056
BspPI	GGATC	2 cut(s)	345, 542
BspTI	CTTAAG	2 cut(s)	265, 389
BsrDI	GCAATG	1 cut(s)	678
BsrGI	TGTACA	1 cut(s)	697
BsrI	ACTGG	1 cut(s)	1253
BssECI	CCNNGG	3 cut(s)	333, 526, 1199
BssMI	GATC	3 cut(s)	337, 534, 1081
BssNI	GRCGYC	2 cut(s)	43, 751
BssT1I	CCWWGG	1 cut(s)	526
Bst2UI	CCWGG	1 cut(s)	335
Bst4CI	ACNGT	3 cut(s)	99, 348, 702
Bst6I	CTCTTC	1 cut(s)	1014
BstACI	GRCGYC	2 cut(s)	43, 751
BstAFI	CTTAAG	2 cut(s)	265, 389
BstAUI	TGTACA	1 cut(s)	697
BstBAI	YACGTR	1 cut(s)	275
BstC8I	GCNNGC	2 cut(s)	412, 1142
BstDEI	CTNAG	8 cut(s)	231, 312, 554, 572, 780, 1085, 1094, 1263
BstDSI	CCRYGG	1 cut(s)	526
BstF5I	GGATG	4 cut(s)	523, 688, 1141, 1177
BstHHI	GCGC	1 cut(s)	671
BstKTI	GATC	3 cut(s)	340, 537, 1084
BstMAI	GTCTC	2 cut(s)	105, 354
BstMBI	GATC	3 cut(s)	337, 534, 1081
BstMWI	GCNNNNNNNGC	3 cut(s)	382, 623, 675
BstNI	CCWGG	1 cut(s)	335
BstNSI	RCATGY	2 cut(s)	1111, 1166
BstSCI	CCNGG	1 cut(s)	333
BstSNI	TACGTA	1 cut(s)	275
BstV1I	GCAGC	7 cut(s)	72, 279, 282, 303, 580, 897, 919
BstX2I	RGATCY	2 cut(s)	337, 1081
BstXI	CCANNNNNNTGG	1 cut(s)	868
BstYI	RGATCY	2 cut(s)	337, 1081
BsuRI	GGCC	6 cut(s)	142, 410, 585, 1033, 1140, 1198
BtgI	CCRYGG	1 cut(s)	526
BtrI	CACGTC	1 cut(s)	1127
BtsCI	GGATG	4 cut(s)	523, 688, 1141, 1177
BtsI	GCAGTG	1 cut(s)	1226
BtsIMutI	CAGTG	3 cut(s)	175, 980, 1226
Cac8I	GCNNGC	2 cut(s)	412, 1142
CaiI	CAGNNNCTG	1 cut(s)	940
CfoI	GCGC	1 cut(s)	671
Cfr13I	GGNCC	3 cut(s)	141, 1031, 1196
CseI	GACGC	3 cut(s)	51, 218, 740
Csp6I	GTAC	3 cut(s)	262, 698, 703
CviAII	CATG	6 cut(s)	442, 512, 527, 640, 1108, 1163
CviQI	GTAC	3 cut(s)	262, 698, 703
DdeI	CTNAG	8 cut(s)	231, 312, 554, 572, 780, 1085, 1094, 1263
DpnI	GATC	3 cut(s)	339, 536, 1083
DpnII	GATC	3 cut(s)	337, 534, 1081
EaeI	YGGCCR	1 cut(s)	1138
Eam1104I	CTCTTC	1 cut(s)	1014
EarI	CTCTTC	1 cut(s)	1014
Eco105I	TACGTA	1 cut(s)	275
Eco130I	CCWWGG	1 cut(s)	526
Eco147I	AGGCCT	1 cut(s)	585
Eco57I	CTGAAG	4 cut(s)	209, 962, 1067, 1134
Eco88I	CYCGRG	1 cut(s)	1193
EcoRII	CCWGG	1 cut(s)	333
EcoT14I	CCWWGG	1 cut(s)	526
ErhI	CCWWGG	1 cut(s)	526
FaeI	CATG	6 cut(s)	445, 515, 530, 643, 1111, 1166
FalI	AAGNNNNNCTT	2 cut(s)	419, 451
FaqI	GGGAC	2 cut(s)	984, 1241
FatI	CATG	6 cut(s)	441, 511, 526, 639, 1107, 1162
FauNDI	CATATG	1 cut(s)	895
FblI	GTMKAC	1 cut(s)	20
Fnu4HI	GCNGC	7 cut(s)	61, 293, 296, 317, 569, 908, 911
FokI	GGATG	4 cut(s)	530, 695, 1148, 1184
Fsp4HI	GCNGC	7 cut(s)	61, 293, 296, 317, 569, 908, 911
FspBI	CTAG	5 cut(s)	491, 659, 755, 785, 794
FspI	TGCGCA	1 cut(s)	670
GlaI	GCGC	1 cut(s)	670
GluI	GCNGC	7 cut(s)	61, 293, 296, 317, 569, 908, 911
HaeIII	GGCC	6 cut(s)	142, 410, 585, 1033, 1140, 1198
HgaI	GACGC	3 cut(s)	51, 218, 740
HhaI	GCGC	1 cut(s)	671
Hin1I	GRCGYC	2 cut(s)	43, 751
Hin1II	CATG	6 cut(s)	445, 515, 530, 643, 1111, 1166
Hin6I	GCGC	1 cut(s)	669
HinP1I	GCGC	1 cut(s)	669
HincII	GTYRAC	1 cut(s)	1105
HindII	GTYRAC	1 cut(s)	1105
HindIII	AAGCTT	3 cut(s)	182, 383, 1116
HinfI	GANTC	5 cut(s)	17, 653, 722, 879, 1065
HphI	GGTGA	2 cut(s)	298, 1029
Hpy166II	GTNNAC	2 cut(s)	21, 1105
Hpy188I	TCNGA	5 cut(s)	10, 70, 189, 936, 1124
Hpy188III	TCNNGA	4 cut(s)	548, 659, 755, 1062
Hpy8I	GTNNAC	2 cut(s)	21, 1105
Hpy99I	CGWCG	1 cut(s)	45
HpyAV	CCTTC	6 cut(s)	184, 739, 857, 917, 1042, 1044
HpyCH4III	ACNGT	3 cut(s)	99, 348, 702
HpyCH4IV	ACGT	3 cut(s)	274, 454, 1126
HpyCH4V	TGCA	8 cut(s)	173, 206, 319, 499, 521, 907, 913, 1250
HpyF10VI	GCNNNNNNNGC	3 cut(s)	382, 623, 675
HpyF3I	CTNAG	8 cut(s)	231, 312, 554, 572, 780, 1085, 1094, 1263
HpySE526I	ACGT	3 cut(s)	274, 454, 1126
Hsp92I	GRCGYC	2 cut(s)	43, 751
Hsp92II	CATG	6 cut(s)	445, 515, 530, 643, 1111, 1166
HspAI	GCGC	1 cut(s)	669
Kzo9I	GATC	3 cut(s)	337, 534, 1081
LmnI	GCTCC	2 cut(s)	217, 871
Lsp1109I	GCAGC	7 cut(s)	72, 279, 282, 303, 580, 897, 919
LweI	GCATC	5 cut(s)	61, 99, 232, 508, 799
MaeI	CTAG	5 cut(s)	491, 659, 755, 785, 794
MaeII	ACGT	3 cut(s)	274, 454, 1126
MaeIII	GTNAC	6 cut(s)	419, 446, 762, 1165, 1184, 1205
MalI	GATC	3 cut(s)	339, 536, 1083
MboI	GATC	3 cut(s)	337, 534, 1081
MboII	GAAGA	4 cut(s)	23, 218, 617, 1001
MflI	RGATCY	2 cut(s)	337, 1081
MlsI	TGGCCA	1 cut(s)	1140
MluCI	AATT	3 cut(s)	322, 543, 976
MluNI	TGGCCA	1 cut(s)	1140
MlyI	GAGTC	2 cut(s)	26, 873
MmeI	TCCRAC	3 cut(s)	56, 752, 849
Mox20I	TGGCCA	1 cut(s)	1140
MroXI	GAANNNNTTC	1 cut(s)	726
MscI	TGGCCA	1 cut(s)	1140
MseI	TTAA	5 cut(s)	180, 266, 390, 563, 824
MslI	CAYNNNNRTG	1 cut(s)	516
Msp20I	TGGCCA	1 cut(s)	1140
MspA1I	CMGCKG	2 cut(s)	571, 910
MspCI	CTTAAG	2 cut(s)	265, 389
MspR9I	CCNGG	1 cut(s)	335
MvaI	CCWGG	1 cut(s)	335
MwoI	GCNNNNNNNGC	3 cut(s)	382, 623, 675
NcoI	CCATGG	1 cut(s)	526
NdeI	CATATG	1 cut(s)	895
NdeII	GATC	3 cut(s)	337, 534, 1081
NlaIII	CATG	6 cut(s)	445, 515, 530, 643, 1111, 1166
NlaIV	GGNNCC	1 cut(s)	1056
NmeAIII	GCCGAG	1 cut(s)	1224
NmuCI	GTSAC	2 cut(s)	419, 1205
NsbI	TGCGCA	1 cut(s)	670
NspI	RCATGY	2 cut(s)	1111, 1166
PceI	AGGCCT	1 cut(s)	585
PdmI	GAANNNNTTC	1 cut(s)	726
PfeI	GAWTC	3 cut(s)	653, 722, 1065
PkrI	GCNGC	7 cut(s)	62, 294, 297, 318, 570, 909, 912
PleI	GAGTC	2 cut(s)	25, 873
PpsI	GAGTC	2 cut(s)	25, 873
Ppu21I	YACGTR	1 cut(s)	275
Psp6I	CCWGG	1 cut(s)	333
PspGI	CCWGG	1 cut(s)	333
PspN4I	GGNNCC	1 cut(s)	1056
PspPI	GGNCC	3 cut(s)	141, 1031, 1196
PstNI	CAGNNNCTG	1 cut(s)	940
PsuI	RGATCY	2 cut(s)	337, 1081
PvuII	CAGCTG	2 cut(s)	571, 910
RsaI	GTAC	3 cut(s)	263, 699, 704
RsaNI	GTAC	3 cut(s)	262, 698, 703
RseI	CAYNNNNRTG	1 cut(s)	516
SaqAI	TTAA	5 cut(s)	180, 266, 390, 563, 824
SatI	GCNGC	7 cut(s)	61, 293, 296, 317, 569, 908, 911
Sau3AI	GATC	3 cut(s)	337, 534, 1081
Sau96I	GGNCC	3 cut(s)	141, 1031, 1196
SchI	GAGTC	2 cut(s)	26, 873
ScrFI	CCNGG	1 cut(s)	335
SfaNI	GCATC	5 cut(s)	61, 99, 232, 508, 799
SmiMI	CAYNNNNRTG	1 cut(s)	516
SmlI	CTYRAG	6 cut(s)	256, 265, 389, 595, 956, 1075
SmoI	CTYRAG	6 cut(s)	256, 265, 389, 595, 956, 1075
SnaBI	TACGTA	1 cut(s)	275
Sse9I	AATT	3 cut(s)	322, 543, 976
SseBI	AGGCCT	1 cut(s)	585
SspMI	CTAG	5 cut(s)	491, 659, 755, 785, 794
StuI	AGGCCT	1 cut(s)	585
StyD4I	CCNGG	1 cut(s)	333
StyI	CCWWGG	1 cut(s)	526
TaaI	ACNGT	3 cut(s)	99, 348, 702
TaiI	ACGT	3 cut(s)	277, 457, 1129
TaqI	TCGA	2 cut(s)	40, 93
TasI	AATT	3 cut(s)	322, 543, 976
TatI	WGTACW	2 cut(s)	697, 702
TfiI	GAWTC	3 cut(s)	653, 722, 1065
Tru1I	TTAA	5 cut(s)	180, 266, 390, 563, 824
Tru9I	TTAA	5 cut(s)	180, 266, 390, 563, 824
TscAI	CASTG	3 cut(s)	175, 987, 1233
TseFI	GTSAC	2 cut(s)	419, 1205
TseI	GCWGC	7 cut(s)	60, 292, 295, 316, 568, 907, 910
Tsp45I	GTSAC	2 cut(s)	419, 1205
TspDTI	ATGAA	5 cut(s)	150, 656, 699, 1223, 1230
TspGWI	ACGGA	3 cut(s)	98, 915, 1184
TspRI	CASTG	3 cut(s)	175, 987, 1233
Vha464I	CTTAAG	2 cut(s)	265, 389
XapI	RAATTY	2 cut(s)	322, 976
XbaI	TCTAGA	2 cut(s)	658, 754
XceI	RCATGY	2 cut(s)	1111, 1166
XmiI	GTMKAC	1 cut(s)	20
XmnI	GAANNNNTTC	1 cut(s)	726
XspI	CTAG	5 cut(s)	491, 659, 755, 785, 794

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.