Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0003960

Physical Location & Seq

Genomic Coordinates Forward (+)

5005596 .. 5008499

Gene Structure 2904 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00282910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2904 bp

ATGGCGGAATCAATTGTATGCCTTGTGATTGATAAGTTAATCTCATTTCTCGTTACCACAGAAGCAAAAATCTCGAGTGATGTGCACAAGGAAATTGCTTGCATCAGAGATGAGCTCGAGAGCATTCGATCATTCTTGAGGGATGCAGATGCAAAGGCAGCAAGAGAAGGGGAGATGATCAATATCAACGAAAGTAGCGCAACTTGGGTTAAACAAGTAAGGGAAGCAGCTTATCACATAGAAGATGTTATTGATGAATATTTGCTACTCATCGCGAAGAAGCATCAAGAACGTGGATTCCTTGGTCTTCTCCGAAAAGTTACTTGGTTGGTGCAGAAAATGAAACCACAGGAGGAGATGGCTTTGAAAATCGAGGGTATGAAGACATTGGTTAGTGATGTTAAGGCTAGAAGTCAAAGATATGGCTTTAATTCGACTGATCAAGGACAAAGCAATGGTGAAAGGGCTATTAACTCGCAGCGGTGGCATGACCCTCGACTGGCTTCCCTTTTCATTGAGGAAGCCGAAGTTGTGGGTGTTGAATCTGCCAGAGATGAGCTGATTACTTGGTTAGTACAAGGAGGAGCATCATCATCATCATCATCATCGTCAACGCGTGCTGTGATATCAGTGGTTGGCATGGGAGGACTTGGTAAGACCACCCTTGCCAAGAAAGTCTATGATAACCAATTGGTGATAGAGCACTTTGACTGCTATGCTTGGATTACAGTGTCACAGTCATACAGGATTGAGGATGTTCTGAGGATGATGATAATGCAATTCTACAAGGCGAGGCACGAGTATATCCCCGATGGGGTTGATGCAATGGATGAGGAGTCCCTAATCAGAAAATCAAGAGAATATTTACAGCAAAAGAGGTATGTGGTTGTGTTTGATGATGTGTGGAATGTTGATTTCTGGGGGGCTATAGAACATGCTTTACCGGACAATGATAAAGGTGGAAGAATAATGATCACTACCCGGATTAAAGATGTTGCTGATTTTTGCAAAAAGTCTAGTTTTGTACACGTTCATTATTTGCAACCTCTACCTCCAGACAAAGCATGGGAATTATTTTGTAGAAAGGCATTTCAATTTGATCAATTGGAGGGTAAATGTCCCCCAGAGTTGGAGGGGTTGTCTCTTAAAATGGTTAAAAAATGTGAAGGGTTACCTTTGGCAATTGTTTCTCTAGGTGGTCTTCTGTCAACCAAAGCTAAAGTTTTATCTGAATGGAAAAAGTTGTACAACAGCCTCAGCTCAGAGTTGGAAAGTAGTCCCCATCTCTCAAGCCTCACAAGAATCTTATCCCTCAGCTATCATCATCTACCATATTACCTCAAATCCTGTGTTTTATACTTTGGCATATTTCCTGAGGATTACTCTATTAGCTGCATAAGACTAGTACGATTGTGGATAGCTGAAGGCTTTGTGAAAGTGACAAAGGGGAAGACATTGGAGGAGGTTGCAGAGGGATATTTGACTGAGCTAATCCATAGAAGCCTGGTTCAAGTATCAAAAGTTTACATTGATGGAAAAGCCAGAAGCTGCCGAGTTCATGACCTCTTGCGTGAAGTCTTCCTTAGAAAGGCATTGGATTCGAGCTTCTGTCACATGTTGTCAGAAGATGAGTCTACTTTTACTCCAACCACTCGACGCCTCTCCATAGACAGCAGCCTCTCTGATGCTTTGGGAAGCATAAGCATCGAACAGTCTCATATCCGTTGTGTTTTTACTTTCAACCAAGATGAATGGCCCAAGTACTCTTTTCTCAATACAATCAGTGCAAACTTTAAGCTTCTGAAGGTATTGGATTTTGCAGATGCTCCAATACAGCATCTTCCTAAGTATGTGGGGAGTTTGTACTACTTGAGGTACTTGAGCCTACGTAATACAAAGGTGAAGCTGTTGCCAAAATCCATAGTTAAGCTGCAAAATTTAGAAACCCTGGATCTAAAACAGTCTCTTGTGTGTGAAATACCAGCAAAGCTCAATAAGCTTCTTAAGTTGCGACATATTTTGGCCTGCTATTGTGACTACGAGATAGACTTTAGCATGAGTTATGAACGTGGAGTGAAGATAAATGATGGTGTAGGGTGCTTACTAGCTTTGCAAAAGCTATACCATGTGGATGCAAACCATGGGGGGATCAGGCTAATTCAAGAACTGAGAAAGTTAAGGCAGCTGAGAAAGTTAGGCCTAAAGAACTTGAGAAGTGCAGATGGACAGGCTCTTTGTGCTTCTATTGAAAACATGAACCTCCTTGAATCTCTAGAAGTATGCGCAATGAGCGAGGATGAAGTCCTTGATGTACAGTACATTTCAACTCCACCAGAATCCATTCGGTTTCTCTACTTGAAGGGGCGTCTAGCGAAGTTACCGAGTTGGATTTCTAAGCTAGAGCATCTAGTCAAGTTGAGGATTTTCTGGTCAAGGTTAAGAGATGACCCACTAAAAGCCCTTCAAAATCTGCCCAACTTGTTGGAGCTTGGACTCTCATACAAGGCATATGACGGAGTGCAGCTGCATTTTGAGGAAGGAGGATTTCAGAAACTGAAGTTGCTAAAACTCAAGCACTTGGAGGGACTAAATTCACTGATTATTGACAATGGGGTTATGCCTCTTCTCCGAGAGCTACAACTTGGGCCTTCACCACAACTGAAGGAGGTTCCCTCTGGAATCCACCACTTGAGAGATCTAAGAACTCTTAGATTTGTTGACATGCCTGAAGCTTTCAGACGTGGAATGGATGGCCAGCATTACTGGGTTGTTGAGCATGTAACGGATGTTCTCTTTAGTTACAAGTTAGGGCCAAGGTGTGACATATATGAAACTCACACACTGCTTCATTCCAACAGTTCTCCACCAGTCCCAACTAAGGAACGCATATATATAGAGCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009626 GO:0009987 GO:0012501 GO:0016020 GO:0019897 GO:0019898 GO:0023052 GO:0033554 GO:0034050 GO:0036094 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

967

Amino Acids

110.54

Weight (kDa)

7.94

Isoelectric Point (pI)

46.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rx_N	PF18052	6 - 99	8.1e-19	Rx N-terminal domain
NB-ARC	PF00931	205 - 365	2.3e-42	NB-ARC domain
WHD_DRP	PF23559	456 - 525	5.9e-23	Disease resistance protein Winged helix domain
LRR_14	PF23598	596 - 905	1.9e-43	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003960)

Species	Orthologous Gene IDs
malus_domestica	MD00G1097800.v1.1 MD01G1186500.v1.1 MD01G1186600.v1.1 MD01G1186800.v1.1 MD01G1187000.v1.1 MD01G1187100.v1.1 MD07G1258600.v1.1 MD07G1258700.v1.1 MD07G1258800.v1.1 MD07G1258900.v1.1 MD07G1259200.v1.1 MD07G1259300.v1.1
prunus_persica	Prupe.2G283200_v2.0.a1 Prupe.2G283300_v2.0.a1 Prupe.2G283400_v2.0.a1
pyrus_communis	pycom01g19810 pycom01g19820 pycom01g19840 pycom01g19900 pycom07g23170 pycom07g23230 pycom07g23240 pycom07g23250 pycom07g23260
rosa_chinensis	RchiOBHm_Chr1g0375241
rosa_laevigata	RLG00000026676
rosa_multiflora	Rmu_co8330553.1_g000001 Rmu_sc0000554.1_g000032
rosa_roxburghii	Rroxscaffold_4G00282910
rosa_rugosa	Rorug01G0389400
rosa_samantha	Rh1AG400100 Rh1BG364400 Rh1DG395000
rosa_wichuraiana	Rw1G035520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	2284
AccI	GTMKAC	1 cut(s)	1634
AccII	CGCG	2 cut(s)	275, 616
AciI	CCGC	2 cut(s)	5, 481
AclWI	GGATC	2 cut(s)	1959, 2156
AcoI	YGGCCR	1 cut(s)	2752
AcsI	RAATTY	2 cut(s)	1936, 2590
AcuI	CTGAAG	5 cut(s)	1443, 1823, 2576, 2681, 2748
AcyI	GRCGYC	2 cut(s)	1657, 2365
AfaI	GTAC	9 cut(s)	576, 1026, 1247, 1407, 1763, 1865, 1877, 2313, 2318
AfiI	CCNNNNNNNGG	5 cut(s)	499, 814, 1129, 1588, 2878
AflII	CTTAAG	1 cut(s)	2003
AflIII	ACRYGT	3 cut(s)	614, 1027, 1614
AhlI	ACTAGT	1 cut(s)	1402
AjiI	CACGTC	1 cut(s)	2741
AjnI	CCWGG	2 cut(s)	1503, 1947
AjuI	GAANNNNNNNTTGG	2 cut(s)	307, 339
AloI	GAACNNNNNNTCC	2 cut(s)	282, 314
Alw21I	GWGCWC	3 cut(s)	87, 117, 705
Alw26I	GTCTC	3 cut(s)	1146, 1719, 1968
Alw44I	GTGCAC	1 cut(s)	83
AlwI	GGATC	2 cut(s)	1959, 2156
AlwNI	CAGNNNCTG	2 cut(s)	1548, 2554
Ama87I	CYCGRG	2 cut(s)	73, 116
AoxI	GGCC	6 cut(s)	1754, 2022, 2197, 2645, 2752, 2810
ApaLI	GTGCAC	1 cut(s)	83
ApoI	RAATTY	2 cut(s)	1936, 2590
ArsI	GACNNNNNNTTYG	2 cut(s)	2217, 2249
Asp700I	GAANNNNTTC	1 cut(s)	2340
AspLEI	GCGC	2 cut(s)	200, 2285
AspS9I	GGNCC	3 cut(s)	1755, 2645, 2810
AsuC2I	CCSGG	1 cut(s)	982
AsuHPI	GGTGA	4 cut(s)	470, 706, 1912, 2643
AvaI	CYCGRG	2 cut(s)	73, 116
AxyI	CCTNAGG	1 cut(s)	1374
BaeGI	GKGCMC	1 cut(s)	87
BalI	TGGCCA	1 cut(s)	2754
BanII	GRGCYC	1 cut(s)	117
BauI	CACGAG	1 cut(s)	797
BbsI	GAAGAC	5 cut(s)	299, 389, 1193, 1457, 1570
Bbv12I	GWGCWC	3 cut(s)	87, 117, 705
BbvCI	CCTCAGC	2 cut(s)	1256, 1313
BccI	CCATC	7 cut(s)	352, 806, 1290, 1526, 2081, 2216, 2744
BciT130I	CCWGG	2 cut(s)	1505, 1949
BclI	TGATCA	4 cut(s)	177, 439, 972, 1099
BcnI	CCSGG	1 cut(s)	982
BcoDI	GTCTC	3 cut(s)	1146, 1719, 1968
BcuI	ACTAGT	1 cut(s)	1402
BfaI	CTAG	9 cut(s)	408, 1017, 1193, 1403, 2105, 2273, 2369, 2399, 2408
BfmI	CTRYAG	1 cut(s)	927
BfrI	CTTAAG	1 cut(s)	2003
BglII	AGATCT	1 cut(s)	2695
BmcAI	AGTACT	1 cut(s)	1763
Bme1390I	CCNGG	3 cut(s)	982, 1505, 1949
BmeT110I	CYCGRG	2 cut(s)	73, 116
BmgBI	CACGTC	1 cut(s)	2741
BmgT120I	GGNCC	3 cut(s)	1755, 2645, 2810
BmiI	GGNNCC	1 cut(s)	2670
BmrFI	CCNGG	3 cut(s)	982, 1505, 1949
BmrI	ACTGGG	1 cut(s)	2773
BmuI	ACTGGG	1 cut(s)	2773
BpiI	GAAGAC	5 cut(s)	299, 389, 1193, 1457, 1570
BplI	GAGNNNNNCTC	6 cut(s)	99, 131, 1367, 1399, 2657, 2689
BpmI	CTGGAG	1 cut(s)	1038
Bpu10I	CCTNAGC	2 cut(s)	1256, 1313
BpuEI	CTTGAG	7 cut(s)	157, 1273, 1891, 1900, 2230, 2555, 2710
BpuMI	CCSGG	1 cut(s)	982
BsaAI	YACGTR	1 cut(s)	1889
BsaBI	GATNNNNATC	1 cut(s)	182
BsaHI	GRCGYC	2 cut(s)	1657, 2365
BsaJI	CCNNGG	4 cut(s)	301, 1947, 2140, 2813
BsaWI	WCCGGW	1 cut(s)	943
BsaXI	ACNNNNNCTCC	4 cut(s)	1124, 1154, 1627, 1657
Bsc4I	CCNNNNNNNGG	5 cut(s)	499, 814, 1129, 1588, 2878
Bse1I	ACTGG	3 cut(s)	504, 2768, 2867
Bse21I	CCTNAGG	1 cut(s)	1374
Bse3DI	GCAATG	3 cut(s)	460, 831, 2292
Bse8I	GATNNNNATC	1 cut(s)	182
BseBI	CCWGG	2 cut(s)	1505, 1949
BseDI	CCNNGG	4 cut(s)	301, 1947, 2140, 2813
BseGI	GGATG	8 cut(s)	148, 760, 771, 835, 2137, 2302, 2755, 2791
BseJI	GATNNNNATC	1 cut(s)	182
BseLI	CCNNNNNNNGG	5 cut(s)	499, 814, 1129, 1588, 2878
BseMI	GCAATG	3 cut(s)	460, 831, 2292
BseMII	CTCAG	8 cut(s)	752, 1270, 1275, 1327, 1365, 1476, 2159, 2177
BseNI	ACTGG	3 cut(s)	504, 2768, 2867
BseRI	GAGGAG	4 cut(s)	368, 597, 848, 1475
BseSI	GKGCMC	1 cut(s)	87
BsgI	GTGCAG	3 cut(s)	353, 2238, 2540
Bsh1236I	CGCG	2 cut(s)	275, 616
BshFI	GGCC	6 cut(s)	1756, 2024, 2199, 2647, 2754, 2812
BsiHKAI	GWGCWC	3 cut(s)	87, 117, 705
BsiHKCI	CYCGRG	2 cut(s)	73, 116
BsiSI	CCGG	2 cut(s)	944, 982
BslFI	GGGAC	5 cut(s)	823, 1104, 1263, 2598, 2855
BslI	CCNNNNNNNGG	5 cut(s)	499, 814, 1129, 1588, 2878
BsmAI	GTCTC	3 cut(s)	1146, 1719, 1968
BsmFI	GGGAC	5 cut(s)	823, 1104, 1263, 2598, 2855
BsmI	GAATGC	1 cut(s)	123
BsnI	GGCC	6 cut(s)	1756, 2024, 2199, 2647, 2754, 2812
BsoBI	CYCGRG	2 cut(s)	73, 116
Bsp1286I	GDGCHC	3 cut(s)	87, 117, 705
Bsp1407I	TGTACA	3 cut(s)	1024, 1245, 2311
Bsp143I	GATC	8 cut(s)	128, 177, 439, 972, 1099, 1951, 2148, 2695
Bsp19I	CCATGG	1 cut(s)	2140
Bsp68I	TCGCGA	1 cut(s)	275
BspACI	CCGC	2 cut(s)	5, 481
BspANI	GGCC	6 cut(s)	1756, 2024, 2199, 2647, 2754, 2812
BspCNI	CTCAG	8 cut(s)	753, 1269, 1274, 1326, 1366, 1477, 2160, 2178
BspFNI	CGCG	2 cut(s)	275, 616
BspHI	TCATGA	1 cut(s)	1558
BspLI	GGNNCC	1 cut(s)	2670
BspPI	GGATC	2 cut(s)	1959, 2156
BspTI	CTTAAG	1 cut(s)	2003
BsrDI	GCAATG	3 cut(s)	460, 831, 2292
BsrGI	TGTACA	3 cut(s)	1024, 1245, 2311
BsrI	ACTGG	3 cut(s)	504, 2768, 2867
BssECI	CCNNGG	4 cut(s)	301, 1947, 2140, 2813
BssMI	GATC	8 cut(s)	128, 177, 439, 972, 1099, 1951, 2148, 2695
BssNI	GRCGYC	2 cut(s)	1657, 2365
BssSI	CACGAG	1 cut(s)	797
BssT1I	CCWWGG	3 cut(s)	301, 2140, 2813
Bst2BI	CACGAG	1 cut(s)	797
Bst2UI	CCWGG	2 cut(s)	1505, 1949
Bst4CI	ACNGT	6 cut(s)	730, 738, 1713, 1962, 2316, 2858
Bst6I	CTCTTC	1 cut(s)	2628
BstACI	GRCGYC	2 cut(s)	1657, 2365
BstAFI	CTTAAG	1 cut(s)	2003
BstAUI	TGTACA	3 cut(s)	1024, 1245, 2311
BstBAI	YACGTR	1 cut(s)	1889
BstC8I	GCNNGC	4 cut(s)	100, 618, 2026, 2756
BstDSI	CCRYGG	1 cut(s)	2140
BstEII	GGTNACC	1 cut(s)	1170
BstENI	CCTNNNNNAGG	1 cut(s)	1586
BstF5I	GGATG	8 cut(s)	148, 760, 771, 835, 2137, 2302, 2755, 2791
BstFNI	CGCG	2 cut(s)	275, 616
BstHHI	GCGC	2 cut(s)	200, 2285
BstKTI	GATC	8 cut(s)	131, 180, 442, 975, 1102, 1954, 2151, 2698
BstMAI	GTCTC	3 cut(s)	1146, 1719, 1968
BstMBI	GATC	8 cut(s)	128, 177, 439, 972, 1099, 1951, 2148, 2695
BstMWI	GCNNNNNNNGC	5 cut(s)	158, 484, 1996, 2237, 2289
BstNI	CCWGG	2 cut(s)	1505, 1949
BstNSI	RCATGY	4 cut(s)	938, 1618, 2725, 2780
BstPI	GGTNACC	1 cut(s)	1170
BstSCI	CCNGG	3 cut(s)	980, 1503, 1947
BstSFI	CTRYAG	1 cut(s)	927
BstSLI	GKGCMC	1 cut(s)	87
BstSNI	TACGTA	1 cut(s)	1889
BstUI	CGCG	2 cut(s)	275, 616
BstV2I	GAAGAC	5 cut(s)	299, 389, 1193, 1457, 1570
BstX2I	RGATCY	2 cut(s)	1951, 2695
BstXI	CCANNNNNNTGG	1 cut(s)	2482
BstYI	RGATCY	2 cut(s)	1951, 2695
Bsu36I	CCTNAGG	1 cut(s)	1374
BsuRI	GGCC	6 cut(s)	1756, 2024, 2199, 2647, 2754, 2812
BtgI	CCRYGG	1 cut(s)	2140
BtgZI	GCGATG	1 cut(s)	256
BtrI	CACGTC	1 cut(s)	2741
BtsCI	GGATG	8 cut(s)	148, 760, 771, 835, 2137, 2302, 2755, 2791
BtsI	GCAGTG	1 cut(s)	2840
BtsIMutI	CAGTG	5 cut(s)	636, 735, 1789, 2594, 2840
BtuMI	TCGCGA	1 cut(s)	275
Cac8I	GCNNGC	4 cut(s)	100, 618, 2026, 2756
CaiI	CAGNNNCTG	2 cut(s)	1548, 2554
CciI	TCATGA	1 cut(s)	1558
CfoI	GCGC	2 cut(s)	200, 2285
Cfr13I	GGNCC	3 cut(s)	1755, 2645, 2810
CseI	GACGC	2 cut(s)	1665, 2354
Csp6I	GTAC	9 cut(s)	575, 1025, 1246, 1406, 1762, 1864, 1876, 2312, 2317
CviQI	GTAC	9 cut(s)	575, 1025, 1246, 1406, 1762, 1864, 1876, 2312, 2317
DpnI	GATC	8 cut(s)	130, 179, 441, 974, 1101, 1953, 2150, 2697
DpnII	GATC	8 cut(s)	128, 177, 439, 972, 1099, 1951, 2148, 2695
EaeI	YGGCCR	1 cut(s)	2752
Eam1104I	CTCTTC	1 cut(s)	2628
EarI	CTCTTC	1 cut(s)	2628
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	115
Eco105I	TACGTA	1 cut(s)	1889
Eco130I	CCWWGG	3 cut(s)	301, 2140, 2813
Eco147I	AGGCCT	1 cut(s)	2199
Eco24I	GRGCYC	1 cut(s)	117
Eco32I	GATATC	1 cut(s)	627
Eco53kI	GAGCTC	1 cut(s)	115
Eco57I	CTGAAG	5 cut(s)	1443, 1823, 2576, 2681, 2748
Eco81I	CCTNAGG	1 cut(s)	1374
Eco88I	CYCGRG	2 cut(s)	73, 116
Eco91I	GGTNACC	1 cut(s)	1170
EcoICRI	GAGCTC	1 cut(s)	115
EcoNI	CCTNNNNNAGG	1 cut(s)	1586
EcoO65I	GGTNACC	1 cut(s)	1170
EcoRII	CCWGG	2 cut(s)	1503, 1947
EcoRV	GATATC	1 cut(s)	627
EcoT14I	CCWWGG	3 cut(s)	301, 2140, 2813
EcoT38I	GRGCYC	1 cut(s)	117
ErhI	CCWWGG	3 cut(s)	301, 2140, 2813
FalI	AAGNNNNNCTT	2 cut(s)	1566, 1598
FaqI	GGGAC	5 cut(s)	823, 1104, 1263, 2598, 2855
FauNDI	CATATG	1 cut(s)	2509
FbaI	TGATCA	4 cut(s)	177, 439, 972, 1099
FblI	GTMKAC	1 cut(s)	1634
FokI	GGATG	8 cut(s)	155, 767, 778, 842, 2144, 2309, 2762, 2798
FriOI	GRGCYC	1 cut(s)	117
FspBI	CTAG	9 cut(s)	408, 1017, 1193, 1403, 2105, 2273, 2369, 2399, 2408
FspI	TGCGCA	1 cut(s)	2284
GlaI	GCGC	2 cut(s)	199, 2284
GsuI	CTGGAG	1 cut(s)	1038
HaeIII	GGCC	6 cut(s)	1756, 2024, 2199, 2647, 2754, 2812
HapII	CCGG	2 cut(s)	944, 982
HgaI	GACGC	2 cut(s)	1665, 2354
HhaI	GCGC	2 cut(s)	200, 2285
Hin1I	GRCGYC	2 cut(s)	1657, 2365
Hin6I	GCGC	2 cut(s)	198, 2283
HinP1I	GCGC	2 cut(s)	198, 2283
HincII	GTYRAC	3 cut(s)	612, 1209, 2719
HindII	GTYRAC	3 cut(s)	612, 1209, 2719
HindIII	AAGCTT	3 cut(s)	1796, 1997, 2730
HpaII	CCGG	2 cut(s)	944, 982
HphI	GGTGA	4 cut(s)	470, 706, 1912, 2643
Hpy166II	GTNNAC	7 cut(s)	85, 612, 1027, 1209, 1525, 1635, 2719
Hpy8I	GTNNAC	7 cut(s)	85, 612, 1027, 1209, 1525, 1635, 2719
Hpy99I	CGWCG	1 cut(s)	1659
HpyAV	CCTTC	9 cut(s)	161, 1160, 1418, 1798, 2353, 2471, 2531, 2656, 2658
HpyCH4III	ACNGT	6 cut(s)	730, 738, 1713, 1962, 2316, 2858
HpyCH4IV	ACGT	5 cut(s)	292, 1029, 1888, 2068, 2740
HpyF10VI	GCNNNNNNNGC	5 cut(s)	158, 484, 1996, 2237, 2289
HpySE526I	ACGT	5 cut(s)	292, 1029, 1888, 2068, 2740
Hsp92I	GRCGYC	2 cut(s)	1657, 2365
HspAI	GCGC	2 cut(s)	198, 2283
Ksp22I	TGATCA	4 cut(s)	177, 439, 972, 1099
Kzo9I	GATC	8 cut(s)	128, 177, 439, 972, 1099, 1951, 2148, 2695
LmnI	GCTCC	3 cut(s)	584, 1831, 2485
MaeI	CTAG	9 cut(s)	408, 1017, 1193, 1403, 2105, 2273, 2369, 2399, 2408
MaeII	ACGT	5 cut(s)	292, 1029, 1888, 2068, 2740
MalI	GATC	8 cut(s)	130, 179, 441, 974, 1101, 1953, 2150, 2697
MboI	GATC	8 cut(s)	128, 177, 439, 972, 1099, 1951, 2148, 2695
MfeI	CAATTG	4 cut(s)	12, 689, 1103, 1182
MflI	RGATCY	2 cut(s)	1951, 2695
MhlI	GDGCHC	3 cut(s)	87, 117, 705
MlsI	TGGCCA	1 cut(s)	2754
MluI	ACGCGT	1 cut(s)	614
MluNI	TGGCCA	1 cut(s)	2754
MlyI	GAGTC	3 cut(s)	845, 1640, 2487
MmeI	TCCRAC	6 cut(s)	1110, 1248, 1670, 2366, 2463, 2877
Mox20I	TGGCCA	1 cut(s)	2754
MroXI	GAANNNNTTC	1 cut(s)	2340
MscI	TGGCCA	1 cut(s)	2754
MslI	CAYNNNNRTG	1 cut(s)	2130
Msp20I	TGGCCA	1 cut(s)	2754
MspA1I	CMGCKG	3 cut(s)	481, 2185, 2524
MspCI	CTTAAG	1 cut(s)	2003
MspI	CCGG	2 cut(s)	944, 982
MspR9I	CCNGG	3 cut(s)	982, 1505, 1949
MunI	CAATTG	4 cut(s)	12, 689, 1103, 1182
Mva1269I	GAATGC	1 cut(s)	123
MvaI	CCWGG	2 cut(s)	1505, 1949
MvnI	CGCG	2 cut(s)	275, 616
MwoI	GCNNNNNNNGC	5 cut(s)	158, 484, 1996, 2237, 2289
NciI	CCSGG	1 cut(s)	982
NcoI	CCATGG	1 cut(s)	2140
NdeI	CATATG	1 cut(s)	2509
NdeII	GATC	8 cut(s)	128, 177, 439, 972, 1099, 1951, 2148, 2695
NlaIV	GGNNCC	1 cut(s)	2670
NmeAIII	GCCGAG	1 cut(s)	1577
NmuCI	GTSAC	5 cut(s)	732, 1438, 1610, 2033, 2819
NruI	TCGCGA	1 cut(s)	275
NsbI	TGCGCA	1 cut(s)	2284
NspI	RCATGY	4 cut(s)	938, 1618, 2725, 2780
PaeR7I	CTCGAG	2 cut(s)	73, 116
PagI	TCATGA	1 cut(s)	1558
PceI	AGGCCT	1 cut(s)	2199
PciI	ACATGT	1 cut(s)	1614
PctI	GAATGC	1 cut(s)	123
PdmI	GAANNNNTTC	1 cut(s)	2340
PfeI	GAWTC	8 cut(s)	8, 297, 542, 1302, 1598, 2267, 2336, 2679
PleI	GAGTC	3 cut(s)	844, 1639, 2487
PpsI	GAGTC	3 cut(s)	844, 1639, 2487
Ppu21I	YACGTR	1 cut(s)	1889
PscI	ACATGT	1 cut(s)	1614
Psp124BI	GAGCTC	1 cut(s)	117
Psp6I	CCWGG	2 cut(s)	1503, 1947
PspEI	GGTNACC	1 cut(s)	1170
PspGI	CCWGG	2 cut(s)	1503, 1947
PspN4I	GGNNCC	1 cut(s)	2670
PspPI	GGNCC	3 cut(s)	1755, 2645, 2810
PsrI	GAACNNNNNNTAC	4 cut(s)	924, 956, 2772, 2804
PstNI	CAGNNNCTG	2 cut(s)	1548, 2554
PsuI	RGATCY	2 cut(s)	1951, 2695
PvuII	CAGCTG	2 cut(s)	2185, 2524
RruI	TCGCGA	1 cut(s)	275
RsaI	GTAC	9 cut(s)	576, 1026, 1247, 1407, 1763, 1865, 1877, 2313, 2318
RsaNI	GTAC	9 cut(s)	575, 1025, 1246, 1406, 1762, 1864, 1876, 2312, 2317
RseI	CAYNNNNRTG	1 cut(s)	2130
SacI	GAGCTC	1 cut(s)	117
Sau3AI	GATC	8 cut(s)	128, 177, 439, 972, 1099, 1951, 2148, 2695
Sau96I	GGNCC	3 cut(s)	1755, 2645, 2810
ScaI	AGTACT	1 cut(s)	1763
SchI	GAGTC	3 cut(s)	845, 1640, 2487
ScrFI	CCNGG	3 cut(s)	982, 1505, 1949
SduI	GDGCHC	3 cut(s)	87, 117, 705
SfcI	CTRYAG	1 cut(s)	927
Sfr274I	CTCGAG	2 cut(s)	73, 116
SlaI	CTCGAG	2 cut(s)	73, 116
SmiMI	CAYNNNNRTG	1 cut(s)	2130
SnaBI	TACGTA	1 cut(s)	1889
SpeI	ACTAGT	1 cut(s)	1402
SseBI	AGGCCT	1 cut(s)	2199
SsiI	CCGC	2 cut(s)	5, 481
SspI	AATATT	2 cut(s)	260, 863
SspMI	CTAG	9 cut(s)	408, 1017, 1193, 1403, 2105, 2273, 2369, 2399, 2408
SstI	GAGCTC	1 cut(s)	117
StuI	AGGCCT	1 cut(s)	2199
StyD4I	CCNGG	3 cut(s)	980, 1503, 1947
StyI	CCWWGG	3 cut(s)	301, 2140, 2813
TaaI	ACNGT	6 cut(s)	730, 738, 1713, 1962, 2316, 2858
TaiI	ACGT	5 cut(s)	295, 1032, 1891, 2071, 2743
TaqI	TCGA	9 cut(s)	74, 117, 127, 372, 434, 496, 1601, 1654, 1707
TatI	WGTACW	7 cut(s)	574, 1024, 1245, 1761, 1863, 2311, 2316
TfiI	GAWTC	8 cut(s)	8, 297, 542, 1302, 1598, 2267, 2336, 2679
TscAI	CASTG	5 cut(s)	636, 735, 1789, 2601, 2847
TseFI	GTSAC	5 cut(s)	732, 1438, 1610, 2033, 2819
Tsp45I	GTSAC	5 cut(s)	732, 1438, 1610, 2033, 2819
TspGWI	ACGGA	3 cut(s)	1712, 2529, 2798
TspRI	CASTG	5 cut(s)	636, 735, 1789, 2601, 2847
Vha464I	CTTAAG	1 cut(s)	2003
VneI	GTGCAC	1 cut(s)	83
XagI	CCTNNNNNAGG	1 cut(s)	1586
XapI	RAATTY	2 cut(s)	1936, 2590
XbaI	TCTAGA	1 cut(s)	2272
XceI	RCATGY	4 cut(s)	938, 1618, 2725, 2780
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1062
XhoI	CTCGAG	2 cut(s)	73, 116
XmiI	GTMKAC	1 cut(s)	1634
XmnI	GAANNNNTTC	1 cut(s)	2340
XspI	CTAG	9 cut(s)	408, 1017, 1193, 1403, 2105, 2273, 2369, 2399, 2408
ZrmI	AGTACT	1 cut(s)	1763

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.