Belongs to the disease resistance NB-LRR family
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| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD00G1097800.v1.1 MD01G1186500.v1.1 MD01G1186600.v1.1 MD01G1186800.v1.1 MD01G1187000.v1.1 MD01G1187100.v1.1 MD07G1258600.v1.1 MD07G1258700.v1.1 MD07G1258800.v1.1 MD07G1258900.v1.1 MD07G1259200.v1.1 MD07G1259300.v1.1 |
| prunus_persica | Prupe.2G283200_v2.0.a1 Prupe.2G283300_v2.0.a1 Prupe.2G283400_v2.0.a1 |
| pyrus_communis | pycom01g19810 pycom01g19820 pycom01g19840 pycom01g19900 pycom07g23170 pycom07g23230 pycom07g23240 pycom07g23250 pycom07g23260 |
| rosa_chinensis | RchiOBHm_Chr1g0375241 |
| rosa_laevigata | RLG00000026676 |
| rosa_multiflora | Rmu_co8330553.1_g000001 Rmu_sc0000554.1_g000032 |
| rosa_roxburghii | Rroxscaffold_4G00282910 |
| rosa_rugosa | Rorug01G0389400 |
| rosa_samantha | Rh1AG400100 Rh1BG364400 Rh1DG395000 |
| rosa_wichuraiana | Rw1G035520 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 669, 3016 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 3107 |
| AccI | GTMKAC | 1 cut(s) | 2370 |
| AccII | CGCG | 2 cut(s) | 978, 1926 |
| AccIII | TCCGGA | 1 cut(s) | 1411 |
| AciI | CCGC | 7 cut(s) | 554, 658, 930, 1317, 1591, 2011, 2356 |
| AclWI | GGATC | 7 cut(s) | 674, 1122, 2304, 2501, 2838, 3092, 3105 |
| AcsI | RAATTY | 4 cut(s) | 357, 2681, 2935, 3389 |
| AcuI | CTGAAG | 4 cut(s) | 930, 1797, 2058, 3029 |
| AfaI | GTAC | 3 cut(s) | 480, 1061, 2468 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 35, 36, 883, 1942, 2476, 3107, 3176 |
| AflII | CTTAAG | 1 cut(s) | 1609 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1195 |
| AjnI | CCWGG | 2 cut(s) | 682, 2292 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2719, 2751 |
| Alw26I | GTCTC | 5 cut(s) | 468, 563, 967, 2067, 2697 |
| AlwI | GGATC | 7 cut(s) | 674, 1122, 2304, 2501, 2838, 3092, 3105 |
| Ama87I | CYCGRG | 5 cut(s) | 370, 879, 2105, 2915, 3169 |
| Aor13HI | TCCGGA | 1 cut(s) | 1411 |
| AoxI | GGCC | 4 cut(s) | 2102, 2542, 3109, 3166 |
| ApeKI | GCWGC | 6 cut(s) | 557, 617, 2353, 2527, 2866, 2869 |
| ApoI | RAATTY | 4 cut(s) | 357, 2681, 2935, 3389 |
| ArsI | GACNNNNNNTTYG | 6 cut(s) | 582, 614, 1689, 1721, 1970, 2002 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 780, 2685 |
| AspLEI | GCGC | 2 cut(s) | 970, 1926 |
| AspS9I | GGNCC | 4 cut(s) | 2103, 2542, 3110, 3167 |
| AsuHPI | GGTGA | 5 cut(s) | 106, 379, 442, 1667, 2776 |
| AsuII | TTCGAA | 1 cut(s) | 755 |
| AvaI | CYCGRG | 5 cut(s) | 370, 879, 2105, 2915, 3169 |
| AxyI | CCTNAGG | 1 cut(s) | 2231 |
| BaeGI | GKGCMC | 1 cut(s) | 1475 |
| BamHI | GGATCC | 1 cut(s) | 3097 |
| BanI | GGYRCC | 2 cut(s) | 669, 3016 |
| BanII | GRGCYC | 2 cut(s) | 2578, 3275 |
| BbsI | GAAGAC | 1 cut(s) | 1022 |
| BbvCI | CCTCAGC | 1 cut(s) | 1667 |
| BbvI | GCAGC | 6 cut(s) | 544, 629, 2340, 2539, 2856, 2878 |
| BceAI | ACGGC | 2 cut(s) | 72, 683 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 450, 484, 860, 894 |
| BciT130I | CCWGG | 2 cut(s) | 684, 2294 |
| BciVI | GTATCC | 1 cut(s) | 33 |
| BclI | TGATCA | 2 cut(s) | 1203, 2943 |
| BcoDI | GTCTC | 5 cut(s) | 468, 563, 967, 2067, 2697 |
| BfaI | CTAG | 5 cut(s) | 198, 512, 2618, 2657, 2951 |
| BfmI | CTRYAG | 2 cut(s) | 558, 1287 |
| BfoI | RGCGCY | 1 cut(s) | 971 |
| BfrI | CTTAAG | 1 cut(s) | 1609 |
| BfuI | GTATCC | 1 cut(s) | 33 |
| BglII | AGATCT | 1 cut(s) | 3052 |
| BisI | GCNGC | 8 cut(s) | 555, 558, 618, 2012, 2354, 2528, 2867, 2870 |
| BlsI | GCNGC | 8 cut(s) | 556, 559, 619, 2013, 2355, 2529, 2868, 2871 |
| Bme1390I | CCNGG | 2 cut(s) | 684, 2294 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1195 |
| BmeT110I | CYCGRG | 5 cut(s) | 370, 879, 2105, 2915, 3169 |
| BmgT120I | GGNCC | 4 cut(s) | 2103, 2542, 3110, 3167 |
| BmiI | GGNNCC | 3 cut(s) | 671, 3018, 3099 |
| BmrFI | CCNGG | 2 cut(s) | 684, 2294 |
| BmrI | ACTGGG | 2 cut(s) | 2522, 3273 |
| BmsI | GCATC | 7 cut(s) | 528, 535, 669, 1728, 2432, 3002, 3036 |
| BmuI | ACTGGG | 2 cut(s) | 2522, 3273 |
| BpiI | GAAGAC | 1 cut(s) | 1022 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1721, 1753 |
| BpmI | CTGGAG | 1 cut(s) | 1461 |
| Bpu10I | CCTNAGC | 2 cut(s) | 549, 1667 |
| Bpu14I | TTCGAA | 1 cut(s) | 755 |
| BpuEI | CTTGAG | 1 cut(s) | 518 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2208 |
| BsaI | GGTCTC | 1 cut(s) | 2697 |
| BsaJI | CCNNGG | 3 cut(s) | 866, 2292, 3242 |
| BsaWI | WCCGGW | 2 cut(s) | 1303, 1411 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1454, 1484 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 35, 36, 883, 1942, 2476, 3107, 3176 |
| Bse118I | RCCGGY | 1 cut(s) | 2326 |
| Bse1I | ACTGG | 3 cut(s) | 1815, 2517, 3268 |
| Bse21I | CCTNAGG | 1 cut(s) | 2231 |
| Bse3DI | GCAATG | 1 cut(s) | 2988 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2208 |
| BseAI | TCCGGA | 1 cut(s) | 1411 |
| BseBI | CCWGG | 2 cut(s) | 684, 2294 |
| BseDI | CCNNGG | 3 cut(s) | 866, 2292, 3242 |
| BseGI | GGATG | 6 cut(s) | 519, 748, 1588, 2447, 2604, 3027 |
| BseJI | GATNNNNATC | 1 cut(s) | 2208 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 35, 36, 883, 1942, 2476, 3107, 3176 |
| BseMI | GCAATG | 1 cut(s) | 2988 |
| BseMII | CTCAG | 6 cut(s) | 832, 1112, 1681, 1830, 2222, 3038 |
| BseNI | ACTGG | 3 cut(s) | 1815, 2517, 3268 |
| BseRI | GAGGAG | 2 cut(s) | 917, 2430 |
| BseSI | GKGCMC | 1 cut(s) | 1475 |
| BseXI | GCAGC | 6 cut(s) | 544, 629, 2340, 2539, 2856, 2878 |
| BsgI | GTGCAG | 1 cut(s) | 2885 |
| Bsh1236I | CGCG | 2 cut(s) | 978, 1926 |
| BshFI | GGCC | 4 cut(s) | 2104, 2544, 3111, 3168 |
| BshNI | GGYRCC | 2 cut(s) | 669, 3016 |
| BsiHKCI | CYCGRG | 5 cut(s) | 370, 879, 2105, 2915, 3169 |
| BsiSI | CCGG | 3 cut(s) | 1304, 1412, 2327 |
| BsiWI | CGTACG | 1 cut(s) | 478 |
| BslFI | GGGAC | 5 cut(s) | 1078, 1536, 2016, 2856, 2943 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 35, 36, 883, 1942, 2476, 3107, 3176 |
| BsmAI | GTCTC | 5 cut(s) | 468, 563, 967, 2067, 2697 |
| BsmBI | CGTCTC | 3 cut(s) | 468, 563, 967 |
| BsmFI | GGGAC | 5 cut(s) | 1078, 1536, 2016, 2856, 2943 |
| BsmI | GAATGC | 1 cut(s) | 3374 |
| BsnI | GGCC | 4 cut(s) | 2104, 2544, 3111, 3168 |
| Bso31I | GGTCTC | 1 cut(s) | 2697 |
| BsoBI | CYCGRG | 5 cut(s) | 370, 879, 2105, 2915, 3169 |
| Bsp119I | TTCGAA | 1 cut(s) | 755 |
| Bsp1286I | GDGCHC | 3 cut(s) | 1475, 2578, 3275 |
| Bsp13I | TCCGGA | 1 cut(s) | 1411 |
| BspACI | CCGC | 7 cut(s) | 554, 658, 930, 1317, 1591, 2011, 2356 |
| BspANI | GGCC | 4 cut(s) | 2104, 2544, 3111, 3168 |
| BspCNI | CTCAG | 6 cut(s) | 831, 1113, 1680, 1831, 2223, 3039 |
| BspEI | TCCGGA | 1 cut(s) | 1411 |
| BspFNI | CGCG | 2 cut(s) | 978, 1926 |
| BspHI | TCATGA | 1 cut(s) | 1912 |
| BspLI | GGNNCC | 3 cut(s) | 671, 3018, 3099 |
| BspMAI | CTGCAG | 1 cut(s) | 562 |
| BspPI | GGATC | 7 cut(s) | 674, 1122, 2304, 2501, 2838, 3092, 3105 |
| BspT104I | TTCGAA | 1 cut(s) | 755 |
| BspT107I | GGYRCC | 2 cut(s) | 669, 3016 |
| BspTI | CTTAAG | 1 cut(s) | 1609 |
| BspTNI | GGTCTC | 1 cut(s) | 2697 |
| BsrDI | GCAATG | 1 cut(s) | 2988 |
| BsrFI | RCCGGY | 1 cut(s) | 2326 |
| BsrI | ACTGG | 3 cut(s) | 1815, 2517, 3268 |
| BssAI | RCCGGY | 1 cut(s) | 2326 |
| BssECI | CCNNGG | 3 cut(s) | 866, 2292, 3242 |
| BssT1I | CCWWGG | 1 cut(s) | 3242 |
| Bst2UI | CCWGG | 2 cut(s) | 684, 2294 |
| Bst4CI | ACNGT | 7 cut(s) | 380, 584, 767, 1129, 2061, 2307, 2466 |
| Bst6I | CTCTTC | 3 cut(s) | 867, 1809, 2976 |
| BstAFI | CTTAAG | 1 cut(s) | 1609 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1165, 1405 |
| BstBI | TTCGAA | 1 cut(s) | 755 |
| BstC8I | GCNNGC | 2 cut(s) | 930, 2864 |
| BstDSI | CCRYGG | 1 cut(s) | 866 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1940 |
| BstF5I | GGATG | 6 cut(s) | 519, 748, 1588, 2447, 2604, 3027 |
| BstFNI | CGCG | 2 cut(s) | 978, 1926 |
| BstH2I | RGCGCY | 1 cut(s) | 971 |
| BstHHI | GCGC | 2 cut(s) | 970, 1926 |
| BstMAI | GTCTC | 5 cut(s) | 468, 563, 967, 2067, 2697 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 554, 1034, 1165, 1405, 2350, 2582, 2716 |
| BstNI | CCWGG | 2 cut(s) | 684, 2294 |
| BstNSI | RCATGY | 1 cut(s) | 1298 |
| BstSCI | CCNGG | 2 cut(s) | 682, 2292 |
| BstSFI | CTRYAG | 2 cut(s) | 558, 1287 |
| BstSLI | GKGCMC | 1 cut(s) | 1475 |
| BstUI | CGCG | 2 cut(s) | 978, 1926 |
| BstV1I | GCAGC | 6 cut(s) | 544, 629, 2340, 2539, 2856, 2878 |
| BstV2I | GAAGAC | 1 cut(s) | 1022 |
| BstX2I | RGATCY | 6 cut(s) | 679, 1114, 2296, 2830, 3052, 3097 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 3120 |
| BstYI | RGATCY | 6 cut(s) | 679, 1114, 2296, 2830, 3052, 3097 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2231 |
| BsuI | GTATCC | 1 cut(s) | 33 |
| BsuRI | GGCC | 4 cut(s) | 2104, 2544, 3111, 3168 |
| BtgI | CCRYGG | 1 cut(s) | 866 |
| BtsCI | GGATG | 6 cut(s) | 519, 748, 1588, 2447, 2604, 3027 |
| BtsI | GCAGTG | 1 cut(s) | 1059 |
| BtsIMutI | CAGTG | 5 cut(s) | 589, 996, 1059, 1808, 2939 |
| Cac8I | GCNNGC | 2 cut(s) | 930, 2864 |
| CciI | TCATGA | 1 cut(s) | 1912 |
| CfoI | GCGC | 2 cut(s) | 970, 1926 |
| Cfr10I | RCCGGY | 1 cut(s) | 2326 |
| Cfr13I | GGNCC | 4 cut(s) | 2103, 2542, 3110, 3167 |
| CseI | GACGC | 4 cut(s) | 548, 984, 1693, 2177 |
| Csp6I | GTAC | 3 cut(s) | 479, 1060, 2467 |
| CviQI | GTAC | 3 cut(s) | 479, 1060, 2467 |
| DraI | TTTAAA | 1 cut(s) | 1996 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1195 |
| Eam1104I | CTCTTC | 3 cut(s) | 867, 1809, 2976 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1195 |
| EarI | CTCTTC | 3 cut(s) | 867, 1809, 2976 |
| EciI | GGCGGA | 2 cut(s) | 1332, 1606 |
| Eco130I | CCWWGG | 1 cut(s) | 3242 |
| Eco24I | GRGCYC | 2 cut(s) | 2578, 3275 |
| Eco31I | GGTCTC | 1 cut(s) | 2697 |
| Eco32I | GATATC | 2 cut(s) | 17, 987 |
| Eco57I | CTGAAG | 4 cut(s) | 930, 1797, 2058, 3029 |
| Eco81I | CCTNAGG | 1 cut(s) | 2231 |
| Eco88I | CYCGRG | 5 cut(s) | 370, 879, 2105, 2915, 3169 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1940 |
| EcoRII | CCWGG | 2 cut(s) | 682, 2292 |
| EcoRV | GATATC | 2 cut(s) | 17, 987 |
| EcoT14I | CCWWGG | 1 cut(s) | 3242 |
| EcoT38I | GRGCYC | 2 cut(s) | 2578, 3275 |
| ErhI | CCWWGG | 1 cut(s) | 3242 |
| Esp3I | CGTCTC | 3 cut(s) | 468, 563, 967 |
| FaqI | GGGAC | 5 cut(s) | 1078, 1536, 2016, 2856, 2943 |
| FauI | CCCGC | 1 cut(s) | 937 |
| FauNDI | CATATG | 1 cut(s) | 409 |
| FbaI | TGATCA | 2 cut(s) | 1203, 2943 |
| FblI | GTMKAC | 1 cut(s) | 2370 |
| Fnu4HI | GCNGC | 8 cut(s) | 555, 558, 618, 2012, 2354, 2528, 2867, 2870 |
| FokI | GGATG | 6 cut(s) | 506, 755, 1595, 2454, 2611, 3014 |
| FriOI | GRGCYC | 2 cut(s) | 2578, 3275 |
| Fsp4HI | GCNGC | 8 cut(s) | 555, 558, 618, 2012, 2354, 2528, 2867, 2870 |
| FspBI | CTAG | 5 cut(s) | 198, 512, 2618, 2657, 2951 |
| GlaI | GCGC | 2 cut(s) | 969, 1925 |
| GluI | GCNGC | 8 cut(s) | 555, 558, 618, 2012, 2354, 2528, 2867, 2870 |
| GsuI | CTGGAG | 1 cut(s) | 1461 |
| HaeII | RGCGCY | 1 cut(s) | 971 |
| HaeIII | GGCC | 4 cut(s) | 2104, 2544, 3111, 3168 |
| HapII | CCGG | 3 cut(s) | 1304, 1412, 2327 |
| HgaI | GACGC | 4 cut(s) | 548, 984, 1693, 2177 |
| HhaI | GCGC | 2 cut(s) | 970, 1926 |
| Hin6I | GCGC | 2 cut(s) | 968, 1924 |
| HinP1I | GCGC | 2 cut(s) | 968, 1924 |
| HincII | GTYRAC | 5 cut(s) | 208, 601, 763, 1563, 1989 |
| HindII | GTYRAC | 5 cut(s) | 208, 601, 763, 1563, 1989 |
| HindIII | AAGCTT | 5 cut(s) | 1035, 1855, 1957, 2342, 2451 |
| HpaII | CCGG | 3 cut(s) | 1304, 1412, 2327 |
| HphI | GGTGA | 5 cut(s) | 106, 379, 442, 1667, 2776 |
| Hpy166II | GTNNAC | 9 cut(s) | 208, 601, 763, 1563, 1879, 1989, 2082, 2371, 3193 |
| Hpy8I | GTNNAC | 9 cut(s) | 208, 601, 763, 1563, 1879, 1989, 2082, 2371, 3193 |
| Hpy99I | CGWCG | 1 cut(s) | 577 |
| HpyCH4III | ACNGT | 7 cut(s) | 380, 584, 767, 1129, 2061, 2307, 2466 |
| HpyCH4IV | ACGT | 3 cut(s) | 477, 2219, 2560 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 554, 1034, 1165, 1405, 2350, 2582, 2716 |
| HpySE526I | ACGT | 3 cut(s) | 477, 2219, 2560 |
| HspAI | GCGC | 2 cut(s) | 968, 1924 |
| Kpn2I | TCCGGA | 1 cut(s) | 1411 |
| Ksp22I | TGATCA | 2 cut(s) | 1203, 2943 |
| LmnI | GCTCC | 3 cut(s) | 660, 965, 2176 |
| Lsp1109I | GCAGC | 6 cut(s) | 544, 629, 2340, 2539, 2856, 2878 |
| LweI | GCATC | 7 cut(s) | 528, 535, 669, 1728, 2432, 3002, 3036 |
| MaeI | CTAG | 5 cut(s) | 198, 512, 2618, 2657, 2951 |
| MaeII | ACGT | 3 cut(s) | 477, 2219, 2560 |
| MaeIII | GTNAC | 4 cut(s) | 131, 1494, 2378, 3155 |
| MfeI | CAATTG | 1 cut(s) | 1536 |
| MflI | RGATCY | 6 cut(s) | 679, 1114, 2296, 2830, 3052, 3097 |
| MhlI | GDGCHC | 3 cut(s) | 1475, 2578, 3275 |
| MlyI | GAGTC | 5 cut(s) | 853, 1205, 1351, 2117, 2255 |
| MmeI | TCCRAC | 4 cut(s) | 1602, 1801, 2711, 2808 |
| MroI | TCCGGA | 1 cut(s) | 1411 |
| MroXI | GAANNNNTTC | 2 cut(s) | 780, 2685 |
| MslI | CAYNNNNRTG | 2 cut(s) | 119, 412 |
| MspA1I | CMGCKG | 2 cut(s) | 2869, 3007 |
| MspCI | CTTAAG | 1 cut(s) | 1609 |
| MspI | CCGG | 3 cut(s) | 1304, 1412, 2327 |
| MspR9I | CCNGG | 2 cut(s) | 684, 2294 |
| MunI | CAATTG | 1 cut(s) | 1536 |
| Mva1269I | GAATGC | 1 cut(s) | 3374 |
| MvaI | CCWGG | 2 cut(s) | 684, 2294 |
| MvnI | CGCG | 2 cut(s) | 978, 1926 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 554, 1034, 1165, 1405, 2350, 2582, 2716 |
| NdeI | CATATG | 1 cut(s) | 409 |
| NlaIV | GGNNCC | 3 cut(s) | 671, 3018, 3099 |
| NmeAIII | GCCGAG | 1 cut(s) | 996 |
| NmuCI | GTSAC | 1 cut(s) | 1494 |
| NspI | RCATGY | 1 cut(s) | 1298 |
| NspV | TTCGAA | 1 cut(s) | 755 |
| PaeR7I | CTCGAG | 2 cut(s) | 879, 2915 |
| PagI | TCATGA | 1 cut(s) | 1912 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 3145, 3224 |
| PctI | GAATGC | 1 cut(s) | 3374 |
| PdmI | GAANNNNTTC | 2 cut(s) | 780, 2685 |
| Pfl23II | CGTACG | 1 cut(s) | 478 |
| PflFI | GACNNNGTC | 1 cut(s) | 584 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 3107 |
| PfoI | TCCNGGA | 1 cut(s) | 682 |
| PkrI | GCNGC | 8 cut(s) | 556, 559, 619, 2013, 2355, 2529, 2868, 2871 |
| PleI | GAGTC | 5 cut(s) | 853, 1204, 1350, 2116, 2255 |
| PpsI | GAGTC | 5 cut(s) | 853, 1204, 1350, 2116, 2255 |
| Psp6I | CCWGG | 2 cut(s) | 682, 2292 |
| PspGI | CCWGG | 2 cut(s) | 682, 2292 |
| PspLI | CGTACG | 1 cut(s) | 478 |
| PspN4I | GGNNCC | 3 cut(s) | 671, 3018, 3099 |
| PspPI | GGNCC | 4 cut(s) | 2103, 2542, 3110, 3167 |
| PspXI | VCTCGAGB | 2 cut(s) | 879, 2915 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1284, 1316 |
| PstI | CTGCAG | 1 cut(s) | 562 |
| PsuI | RGATCY | 6 cut(s) | 679, 1114, 2296, 2830, 3052, 3097 |
| PsyI | GACNNNGTC | 1 cut(s) | 584 |
| PvuII | CAGCTG | 2 cut(s) | 2869, 3007 |
| RsaI | GTAC | 3 cut(s) | 480, 1061, 2468 |
| RsaNI | GTAC | 3 cut(s) | 479, 1060, 2467 |
| RseI | CAYNNNNRTG | 2 cut(s) | 119, 412 |
| SatI | GCNGC | 8 cut(s) | 555, 558, 618, 2012, 2354, 2528, 2867, 2870 |
| Sau96I | GGNCC | 4 cut(s) | 2103, 2542, 3110, 3167 |
| SchI | GAGTC | 5 cut(s) | 853, 1205, 1351, 2117, 2255 |
| ScrFI | CCNGG | 2 cut(s) | 684, 2294 |
| SduI | GDGCHC | 3 cut(s) | 1475, 2578, 3275 |
| SfaNI | GCATC | 7 cut(s) | 528, 535, 669, 1728, 2432, 3002, 3036 |
| SfcI | CTRYAG | 2 cut(s) | 558, 1287 |
| Sfr274I | CTCGAG | 2 cut(s) | 879, 2915 |
| SfuI | TTCGAA | 1 cut(s) | 755 |
| SlaI | CTCGAG | 2 cut(s) | 879, 2915 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 119, 412 |
| SmlI | CTYRAG | 4 cut(s) | 533, 879, 1609, 2915 |
| SmoI | CTYRAG | 4 cut(s) | 533, 879, 1609, 2915 |
| SsiI | CCGC | 7 cut(s) | 554, 658, 930, 1317, 1591, 2011, 2356 |
| SspI | AATATT | 1 cut(s) | 650 |
| SspMI | CTAG | 5 cut(s) | 198, 512, 2618, 2657, 2951 |
| StyD4I | CCNGG | 2 cut(s) | 682, 2292 |
| StyI | CCWWGG | 1 cut(s) | 3242 |
| TaaI | ACNGT | 7 cut(s) | 380, 584, 767, 1129, 2061, 2307, 2466 |
| TaiI | ACGT | 3 cut(s) | 480, 2222, 2563 |
| TaqI | TCGA | 9 cut(s) | 426, 470, 755, 880, 1897, 1976, 2916, 3040, 3227 |
| TaqII | GACCGA | 1 cut(s) | 2679 |
| TauI | GCSGC | 2 cut(s) | 557, 2014 |
| TscAI | CASTG | 5 cut(s) | 589, 996, 1059, 1815, 2946 |
| TseFI | GTSAC | 1 cut(s) | 1494 |
| TseI | GCWGC | 6 cut(s) | 557, 617, 2353, 2527, 2866, 2869 |
| Tsp45I | GTSAC | 1 cut(s) | 1494 |
| TspGWI | ACGGA | 2 cut(s) | 855, 2548 |
| TspRI | CASTG | 5 cut(s) | 589, 996, 1059, 1815, 2946 |
| Tth111I | GACNNNGTC | 1 cut(s) | 584 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 3107 |
| Vha464I | CTTAAG | 1 cut(s) | 1609 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1940 |
| XapI | RAATTY | 4 cut(s) | 357, 2681, 2935, 3389 |
| XbaI | TCTAGA | 2 cut(s) | 2617, 2656 |
| XceI | RCATGY | 1 cut(s) | 1298 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 680 |
| XhoI | CTCGAG | 2 cut(s) | 879, 2915 |
| XmiI | GTMKAC | 1 cut(s) | 2370 |
| XmnI | GAANNNNTTC | 2 cut(s) | 780, 2685 |
| XspI | CTAG | 5 cut(s) | 198, 512, 2618, 2657, 2951 |