pycom01g19810

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
Physical Location & Seq
Forward (+)
18365255 .. 18379963
14709 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g19810.2

Sequence Viewer

Length: 1719 bp
ATGAGCCAATCGCTGCCTTATCACATCATAATTCAATATGAGCCAATCGCTGCCTTATTACATCACTTCCACAGTTTAATTCACCTTGCAATTCAAAAAGTCGTCTGCAATGGATTTGGATTCCATTCGGATTCAAAATGCTTTGTTCACCAGAAAAGGGAAGGATACAAAATGGCAGAACACATTGTATGCTTTGTGATCGACAAGTTAATTCAACTACTCATCACCGCAGAAGCAAACCTTTCGAGAAATGCACGTACTGAAGTTGGTTTCATCAAAGATGAACTCGAGAGCATCCGATCATTCCTCAAGGAAGCAGATGCTAAGGCTGCAGCAGCAGATGGAGAGACGGGGAATGACGGTGTCAAAACTTGGGTCAATCAAGTAAGGGAAGCAGCTTTTTACATTGAAGATGTCATTGATGAATATTTGCTCCGCATCTTACGGCATCATCAACACCATGGATTCCTTCGTTTTTTCCACAAAATTATCCGGTTGGCTAAAAAAATGAGATCACAGGATGGGATAGTTTTGAAAGTTCACGGTATAAAAGAATTGGTTCGTGAAATCAAGGAGAGAAGTGAAAGATATGGATTCAAATCGATTGATCAGCAAGGCCAGAGCAGTGGAGAAAAGACTCTACCGTTGAACGACCCTCGAGTGGCTTCCCTTTTCATTGGGGAAGCTGAAATCGTGGGGATTGAATGTGCCAGAGATGAGCTAACTCGTTTGTTGGTAGAAGGAGCACCGAGACGTGAAGTGATATCAGTGGTTGGTATGGGAGGACTTGGGAAAACCACTCTTGCCAAGAAAGTATATGACCAGAAGAAGGTGATGGCACACTTTGATTGCTATGCTTGGATTACGGTGTCCCAGTCGTACAGGGTTGAGGATCTTCTGAGGACGGTAATAAAAAAGTTCTACAGTTCAAGGAAGGAGCGTTTCCCAGAGGAAATTGACACAATGGATGAGGAGTCCCTGATTAGCACATCAAGAGAGTATTTGCAGCAAAAGAGGTACGTTGTTGTGTTTGATGATGTGTGGAAAGTAGATTTTTGGGGGTCTATAGAACATGCTTTAACCGATAATAAAGACGGACGAATAATTATCACTACACGGATTCAAGATGTTGCCAACTTTTGCAAAAGATCATGTTTTGTTCATGTTCATCACTTGCAGCCTCTGCCTCCAAACAAGGCATGGGAATTGTTTTGTAGAAAGGCATTTCAGTTTGAATTGGAGGGAAATTGTCCTGAAGAGTTGGAAGAGTTGTCTCTTAACATCGTCAAAAGATGCGTAGGACTACCCTTGGCAATTGTTTCCATAGGTGGTTTGCTGTCAACTAAAGCTAAAGTTGTGTCTGAATGGCAGAAGTTATACAATAGCTTAAGTTCAGAGTTAGAAAGAAATCCCCACCTTACAAGCGTCACAAGAATCCTATCCCTCAGCTATCACCATCTACCGTATTACCTCAAATCGTGTGTGTTATACTTTGGCATTTTTCCCGAGGATTACTCAGTTAGTTGCATAAGATTAGTTCGGTTGTGGATCGATGAAGGCTTTGTGAAACCGAAGAGGGGCAAGACACTAGAAGAGGTTGGAGAGGAATACTTGATGGAGCTAATTCACAGAAGCCTGGTTCAAGTTTCAGAAGTTTTCACTGATGGAAAAGCTCGAGCTTGTAGAGTTCATCGATCTTTTGCACGAAGTCCTACGTAA

Protein Analysis

573

Amino Acids

65.83

Weight (kDa)

8.28

Isoelectric Point (pI)

46.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 228, 436
AclWI GGATC 2 cut(s) 900, 1556
AcuI CTGAAG 2 cut(s) 282, 1275
AfaI GTAC 3 cut(s) 259, 881, 1019
AfiI CCNNNNNNNGG 4 cut(s) 157, 661, 829, 1577
AflII CTTAAG 1 cut(s) 1387
AjiI CACGTC 1 cut(s) 755
AjnI CCWGG 1 cut(s) 1635
AluBI AGCT 9 cut(s) 398, 686, 721, 1349, 1386, 1449, 1621, 1673, 1679
AluI AGCT 9 cut(s) 398, 686, 721, 1349, 1386, 1449, 1621, 1673, 1679
Alw21I GWGCWC 1 cut(s) 748
Alw26I GTCTC 3 cut(s) 341, 745, 1278
AlwI GGATC 2 cut(s) 900, 1556
AlwNI CAGNNNCTG 1 cut(s) 1183
Ama87I CYCGRG 4 cut(s) 287, 657, 1505, 1674
AoxI GGCC 1 cut(s) 616
ApeKI GCWGC 8 cut(s) 13, 50, 329, 332, 335, 395, 1006, 1177
ArsI GACNNNNNNTTYG 2 cut(s) 360, 392
Asp700I GAANNNNTTC 1 cut(s) 558
AsuHPI GGTGA 5 cut(s) 74, 140, 217, 844, 1445
AvaI CYCGRG 4 cut(s) 287, 657, 1505, 1674
Bbv12I GWGCWC 1 cut(s) 748
BbvCI CCTCAGC 1 cut(s) 1445
BbvI GCAGC 7 cut(s) 37, 316, 344, 347, 407, 1018, 1189
BccI CCATC 6 cut(s) 335, 515, 829, 1464, 1609, 1658
BceAI ACGGC 1 cut(s) 461
BcgI CGANNNNNNTGC 2 cut(s) 225, 259
BciT130I CCWGG 1 cut(s) 1637
BciVI GTATCC 1 cut(s) 158
BclI TGATCA 1 cut(s) 607
BcoDI GTCTC 3 cut(s) 341, 745, 1278
BfaI CTAG 1 cut(s) 1589
BfmI CTRYAG 3 cut(s) 330, 922, 1065
BfrI CTTAAG 1 cut(s) 1387
BfuI GTATCC 1 cut(s) 158
BisI GCNGC 8 cut(s) 14, 51, 330, 333, 336, 396, 1007, 1178
BlsI GCNGC 8 cut(s) 15, 52, 331, 334, 337, 397, 1008, 1179
Bme1390I CCNGG 1 cut(s) 1637
BmeT110I CYCGRG 4 cut(s) 287, 657, 1505, 1674
BmgBI CACGTC 1 cut(s) 755
BmrFI CCNGG 1 cut(s) 1637
BmrI ACTGGG 1 cut(s) 868
BmsI GCATC 5 cut(s) 303, 310, 447, 457, 1283
BmuI ACTGGG 1 cut(s) 868
BplI GAGNNNNNCTC 2 cut(s) 1499, 1531
Bpu10I CCTNAGC 2 cut(s) 324, 1445
BpuEI CTTGAG 1 cut(s) 293
Bsa29I ATCGAT 3 cut(s) 602, 1551, 1693
BsaAI YACGTR 2 cut(s) 257, 1716
BsaBI GATNNNNATC 1 cut(s) 598
BsaJI CCNNGG 3 cut(s) 460, 1308, 1506
BsaWI WCCGGW 1 cut(s) 492
Bsc4I CCNNNNNNNGG 4 cut(s) 157, 661, 829, 1577
Bse1I ACTGG 1 cut(s) 874
Bse3DI GCAATG 1 cut(s) 115
Bse8I GATNNNNATC 1 cut(s) 598
BseBI CCWGG 1 cut(s) 1637
BseCI ATCGAT 3 cut(s) 602, 1551, 1693
BseDI CCNNGG 3 cut(s) 460, 1308, 1506
BseGI GGATG 3 cut(s) 294, 526, 973
BseJI GATNNNNATC 1 cut(s) 598
BseLI CCNNNNNNNGG 4 cut(s) 157, 661, 829, 1577
BseMI GCAATG 1 cut(s) 115
BseMII CTCAG 3 cut(s) 890, 1459, 1530
BseNI ACTGG 1 cut(s) 874
BseRI GAGGAG 1 cut(s) 986
BseXI GCAGC 7 cut(s) 37, 316, 344, 347, 407, 1018, 1189
BshFI GGCC 1 cut(s) 618
BshVI ATCGAT 3 cut(s) 602, 1551, 1693
BsiHKAI GWGCWC 1 cut(s) 748
BsiHKCI CYCGRG 4 cut(s) 287, 657, 1505, 1674
BsiSI CCGG 1 cut(s) 493
BslFI GGGAC 2 cut(s) 856, 961
BslI CCNNNNNNNGG 4 cut(s) 157, 661, 829, 1577
BsmAI GTCTC 3 cut(s) 341, 745, 1278
BsmBI CGTCTC 2 cut(s) 341, 745
BsmFI GGGAC 2 cut(s) 856, 961
BsnI GGCC 1 cut(s) 618
BsoBI CYCGRG 4 cut(s) 287, 657, 1505, 1674
Bsp1286I GDGCHC 1 cut(s) 748
Bsp143I GATC 8 cut(s) 198, 299, 512, 607, 892, 1148, 1548, 1694
Bsp19I CCATGG 1 cut(s) 460
BspACI CCGC 2 cut(s) 228, 436
BspANI GGCC 1 cut(s) 618
BspCNI CTCAG 3 cut(s) 891, 1458, 1529
BspDI ATCGAT 3 cut(s) 602, 1551, 1693
BspMAI CTGCAG 1 cut(s) 334
BspPI GGATC 2 cut(s) 900, 1556
BspTI CTTAAG 1 cut(s) 1387
BsrDI GCAATG 1 cut(s) 115
BsrI ACTGG 1 cut(s) 874
BssECI CCNNGG 3 cut(s) 460, 1308, 1506
BssMI GATC 8 cut(s) 198, 299, 512, 607, 892, 1148, 1548, 1694
BssT1I CCWWGG 2 cut(s) 460, 1308
Bst2UI CCWGG 1 cut(s) 1637
Bst4CI ACNGT 8 cut(s) 74, 362, 545, 645, 868, 907, 926, 1464
Bst6I CTCTTC 4 cut(s) 1251, 1260, 1568, 1587
BstAFI CTTAAG 1 cut(s) 1387
BstAPI GCANNNNNTGC 1 cut(s) 1183
BstBAI YACGTR 2 cut(s) 257, 1716
BstDEI CTNAG 4 cut(s) 324, 899, 1445, 1516
BstDSI CCRYGG 1 cut(s) 460
BstF5I GGATG 3 cut(s) 294, 526, 973
BstKTI GATC 8 cut(s) 201, 302, 515, 610, 895, 1151, 1551, 1697
BstMAI GTCTC 3 cut(s) 341, 745, 1278
BstMBI GATC 8 cut(s) 198, 299, 512, 607, 892, 1148, 1548, 1694
BstMWI GCNNNNNNNGC 3 cut(s) 329, 335, 1183
BstNI CCWGG 1 cut(s) 1637
BstNSI RCATGY 1 cut(s) 1076
BstSCI CCNGG 1 cut(s) 1635
BstSFI CTRYAG 3 cut(s) 330, 922, 1065
BstSNI TACGTA 1 cut(s) 1716
BstV1I GCAGC 7 cut(s) 37, 316, 344, 347, 407, 1018, 1189
BstX2I RGATCY 1 cut(s) 892
BstXI CCANNNNNNTGG 1 cut(s) 626
BstYI RGATCY 1 cut(s) 892
Bsu15I ATCGAT 3 cut(s) 602, 1551, 1693
BsuI GTATCC 1 cut(s) 158
BsuRI GGCC 1 cut(s) 618
BsuTUI ATCGAT 3 cut(s) 602, 1551, 1693
BtgI CCRYGG 1 cut(s) 460
BtrI CACGTC 1 cut(s) 755
BtsCI GGATG 3 cut(s) 294, 526, 973
BtsI GCAGTG 1 cut(s) 631
BtsIMutI CAGTG 3 cut(s) 631, 774, 1659
CaiI CAGNNNCTG 1 cut(s) 1183
ClaI ATCGAT 3 cut(s) 602, 1551, 1693
CseI GACGC 1 cut(s) 1414
Csp6I GTAC 3 cut(s) 258, 880, 1018
CviAII CATG 5 cut(s) 461, 1073, 1152, 1163, 1200
CviQI GTAC 3 cut(s) 258, 880, 1018
DdeI CTNAG 4 cut(s) 324, 899, 1445, 1516
DpnI GATC 8 cut(s) 200, 301, 514, 609, 894, 1150, 1550, 1696
DpnII GATC 8 cut(s) 198, 299, 512, 607, 892, 1148, 1548, 1694
Eam1104I CTCTTC 4 cut(s) 1251, 1260, 1568, 1587
EarI CTCTTC 4 cut(s) 1251, 1260, 1568, 1587
Eco105I TACGTA 1 cut(s) 1716
Eco130I CCWWGG 2 cut(s) 460, 1308
Eco32I GATATC 1 cut(s) 765
Eco57I CTGAAG 2 cut(s) 282, 1275
Eco88I CYCGRG 4 cut(s) 287, 657, 1505, 1674
EcoRII CCWGG 1 cut(s) 1635
EcoRV GATATC 1 cut(s) 765
EcoT14I CCWWGG 2 cut(s) 460, 1308
ErhI CCWWGG 2 cut(s) 460, 1308
Esp3I CGTCTC 2 cut(s) 341, 745
FaeI CATG 5 cut(s) 464, 1076, 1155, 1166, 1203
FalI AAGNNNNNCTT 2 cut(s) 225, 257
FaqI GGGAC 2 cut(s) 856, 961
FatI CATG 5 cut(s) 460, 1072, 1151, 1162, 1199
FbaI TGATCA 1 cut(s) 607
Fnu4HI GCNGC 8 cut(s) 14, 51, 330, 333, 336, 396, 1007, 1178
FokI GGATG 3 cut(s) 281, 533, 980
Fsp4HI GCNGC 8 cut(s) 14, 51, 330, 333, 336, 396, 1007, 1178
FspBI CTAG 1 cut(s) 1589
GluI GCNGC 8 cut(s) 14, 51, 330, 333, 336, 396, 1007, 1178
HaeIII GGCC 1 cut(s) 618
HapII CCGG 1 cut(s) 493
HgaI GACGC 1 cut(s) 1414
Hin1II CATG 5 cut(s) 464, 1076, 1155, 1166, 1203
HincII GTYRAC 1 cut(s) 1341
HindII GTYRAC 1 cut(s) 1341
HinfI GANTC 8 cut(s) 120, 131, 465, 594, 637, 974, 1120, 1434
HpaII CCGG 1 cut(s) 493
HphI GGTGA 5 cut(s) 74, 140, 217, 844, 1445
Hpy166II GTNNAC 3 cut(s) 148, 541, 1341
Hpy188I TCNGA 6 cut(s) 130, 299, 900, 1363, 1396, 1651
Hpy188III TCNNGA 7 cut(s) 246, 289, 563, 993, 1124, 1253, 1505
Hpy8I GTNNAC 3 cut(s) 148, 541, 1341
HpyAV CCTTC 6 cut(s) 155, 479, 734, 823, 928, 1550
HpyCH4III ACNGT 8 cut(s) 74, 362, 545, 645, 868, 907, 926, 1464
HpyCH4IV ACGT 4 cut(s) 256, 754, 1020, 1715
HpyCH4V TGCA 9 cut(s) 89, 108, 254, 332, 1006, 1143, 1177, 1527, 1703
HpyF10VI GCNNNNNNNGC 3 cut(s) 329, 335, 1183
HpyF3I CTNAG 4 cut(s) 324, 899, 1445, 1516
HpySE526I ACGT 4 cut(s) 256, 754, 1020, 1715
Hsp92II CATG 5 cut(s) 464, 1076, 1155, 1166, 1203
Ksp22I TGATCA 1 cut(s) 607
Kzo9I GATC 8 cut(s) 198, 299, 512, 607, 892, 1148, 1548, 1694
LmnI GCTCC 4 cut(s) 438, 743, 937, 1618
Lsp1109I GCAGC 7 cut(s) 37, 316, 344, 347, 407, 1018, 1189
LweI GCATC 5 cut(s) 303, 310, 447, 457, 1283
MaeI CTAG 1 cut(s) 1589
MaeII ACGT 4 cut(s) 256, 754, 1020, 1715
MaeIII GTNAC 1 cut(s) 1426
MalI GATC 8 cut(s) 200, 301, 514, 609, 894, 1150, 1550, 1696
MboI GATC 8 cut(s) 198, 299, 512, 607, 892, 1148, 1548, 1694
MboII GAAGA 7 cut(s) 422, 838, 887, 1268, 1277, 1585, 1604
MfeI CAATTG 1 cut(s) 1314
MflI RGATCY 1 cut(s) 892
MhlI GDGCHC 1 cut(s) 748
MlyI GAGTC 2 cut(s) 631, 983
MmeI TCCRAC 2 cut(s) 1242, 1579
MroXI GAANNNNTTC 1 cut(s) 558
MseI TTAA 5 cut(s) 77, 209, 1079, 1278, 1388
MspCI CTTAAG 1 cut(s) 1387
MspI CCGG 1 cut(s) 493
MspR9I CCNGG 1 cut(s) 1637
MunI CAATTG 1 cut(s) 1314
MvaI CCWGG 1 cut(s) 1637
MwoI GCNNNNNNNGC 3 cut(s) 329, 335, 1183
NcoI CCATGG 1 cut(s) 460
NdeII GATC 8 cut(s) 198, 299, 512, 607, 892, 1148, 1548, 1694
NlaIII CATG 5 cut(s) 464, 1076, 1155, 1166, 1203
NmuCI GTSAC 1 cut(s) 1426
NspI RCATGY 1 cut(s) 1076
PaeR7I CTCGAG 3 cut(s) 287, 657, 1674
PdmI GAANNNNTTC 1 cut(s) 558
PfeI GAWTC 6 cut(s) 120, 131, 465, 594, 1120, 1434
PflFI GACNNNGTC 1 cut(s) 362
PkrI GCNGC 8 cut(s) 15, 52, 331, 334, 337, 397, 1008, 1179
PleI GAGTC 2 cut(s) 631, 982
PpsI GAGTC 2 cut(s) 631, 982
Ppu21I YACGTR 2 cut(s) 257, 1716
Psp6I CCWGG 1 cut(s) 1635
PspGI CCWGG 1 cut(s) 1635
PspXI VCTCGAGB 2 cut(s) 657, 1674
PstI CTGCAG 1 cut(s) 334
PstNI CAGNNNCTG 1 cut(s) 1183
PsuI RGATCY 1 cut(s) 892
PsyI GACNNNGTC 1 cut(s) 362
RsaI GTAC 3 cut(s) 259, 881, 1019
RsaNI GTAC 3 cut(s) 258, 880, 1018
SaqAI TTAA 5 cut(s) 77, 209, 1079, 1278, 1388
SatI GCNGC 8 cut(s) 14, 51, 330, 333, 336, 396, 1007, 1178
Sau3AI GATC 8 cut(s) 198, 299, 512, 607, 892, 1148, 1548, 1694
SchI GAGTC 2 cut(s) 631, 983
ScrFI CCNGG 1 cut(s) 1637
SduI GDGCHC 1 cut(s) 748
SfaNI GCATC 5 cut(s) 303, 310, 447, 457, 1283
SfcI CTRYAG 3 cut(s) 330, 922, 1065
Sfr274I CTCGAG 3 cut(s) 287, 657, 1674
SlaI CTCGAG 3 cut(s) 287, 657, 1674
SmlI CTYRAG 5 cut(s) 287, 308, 657, 1387, 1674
SmoI CTYRAG 5 cut(s) 287, 308, 657, 1387, 1674
SnaBI TACGTA 1 cut(s) 1716
SsiI CCGC 2 cut(s) 228, 436
SspI AATATT 1 cut(s) 428
SspMI CTAG 1 cut(s) 1589
StyD4I CCNGG 1 cut(s) 1635
StyI CCWWGG 2 cut(s) 460, 1308
TaaI ACNGT 8 cut(s) 74, 362, 545, 645, 868, 907, 926, 1464
TaiI ACGT 4 cut(s) 259, 757, 1023, 1718
TaqI TCGA 8 cut(s) 201, 245, 288, 602, 658, 1551, 1675, 1693
TfiI GAWTC 6 cut(s) 120, 131, 465, 594, 1120, 1434
Tru1I TTAA 5 cut(s) 77, 209, 1079, 1278, 1388
Tru9I TTAA 5 cut(s) 77, 209, 1079, 1278, 1388
TscAI CASTG 3 cut(s) 631, 774, 1666
TseFI GTSAC 1 cut(s) 1426
TseI GCWGC 8 cut(s) 13, 50, 329, 332, 335, 395, 1006, 1177
Tsp45I GTSAC 1 cut(s) 1426
TspDTI ATGAA 8 cut(s) 262, 297, 438, 664, 1151, 1157, 1569, 1679
TspGWI ACGGA 2 cut(s) 1110, 1132
TspRI CASTG 3 cut(s) 631, 774, 1666
Tth111I GACNNNGTC 1 cut(s) 362
Vha464I CTTAAG 1 cut(s) 1387
XceI RCATGY 1 cut(s) 1076
XcmI CCANNNNNNNNNTGG 1 cut(s) 1197
XhoI CTCGAG 3 cut(s) 287, 657, 1674
XmnI GAANNNNTTC 1 cut(s) 558
XspI CTAG 1 cut(s) 1589
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.