pycom01g19820

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
Physical Location & Seq
Forward (+)
18380043 .. 18392210
12168 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g19820.2

Sequence Viewer

Length: 1299 bp
ATGGACATCAGTCCCTCTGAGGCCCTAGGAAGCATTACACAATCTCATATTCGTTCTGTATTTACTTTCAACCTAGAAGAATGGCCCGAGTCTTTTCTCGATACATTGAGTGGAAACATTAAACTTCTGAAAGTATTGGATTTCATGGATGCTCCAATCAATCGACTTCCGAAATATGTGGGGGATTTGTATCTCTTGACGTATTTAAGCCTGAGGAATACAAAGGTGAAGTTGCTTCCAGACTCCATAGGCAATCTACTAAACTTGGAAACCCTGGATCTAAAACAGTCTCTGGTGTATGAAATACCAGCCAAGATCAGTAAGCTTGTTAAGCTGAGGCATCTTTTGGCCTACCATGGTGACTACAACTACGACGTGGGTTTGTTCTTGAATATGGAAAAAGGAGTGAAGATACATGAAGGTATTGGATGCTTACAAGCTTTGCAAAAACTGTGCTACGTGGAGGCGAATCATGGAGGGATCAGGCTAATCAAAGAACTGGGAAAGTTAAGACAGCTGCGGAAGTTAGGCCTAAAAAACTTGAAAAGTGAAGATGGAAGGGCTGTGTGTGCTTCTGTTGAAAAGATGAACCACCTTGAATCTCTAATTTTATCTGCAGTAAATGAACATGAAGTCCTTGATCTAGAATCCATTTCAACTCCACCACAATTTATCCGTGCGCTCCGCTTGATAGGGTGTTTAGAGCAGTTGCCAGGTTGGATTTCAAATCTTCAACACCTAGTCAGGATAACCATCCTTTGGTCAAGGTTGAGAGATTCCCCACTAAAAGCCCTTCAAAATCTACCTAATCTGTTGGAGCTAGTTTTGGCTATCAATGCCTATGATGGTGTGCAGCTGCATTTTGAGGAAGGAGGATTTCAGAAACTCAGAGTGCTAGGACTCAGGGAAATGGAGGGACTAAATTCGTTGATCATAGACGATGGGGTCATGCCTCTTCTGCAAGAGTTTCACGTTGGACCTTCCCCACAACTGAAGGAGGTGCCCTCTGGCATCCACCATCTCCGGAATCTGACATATCTTAATTTCTGTGACATGCCAAAGGAGTTTACGCGGCAGATGGATCCAAAAAATGGCCAACATTATTGGATTGTTGAACATATAAAAAATGTTAGTTTTAGTTACAAGGTCAGACCAAGATGGGGTGCATATGAAAGTCATGCCCTGCGTGATGCCAGCTCTTCTCTTTGGTCGAATTATTTGTCGAAAGGGGTGATTGGTAAGCACGATGATGGAGTGTGCTTAGAAGTAGGGGCGAAGTTTCCGAGCAGACATGACTAA

Protein Analysis

433

Amino Acids

49.01

Weight (kDa)

7.29

Isoelectric Point (pI)

46.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 944
AccB1I GGYRCC 1 cut(s) 1000
AccB7I CCANNNNNTGG 2 cut(s) 759, 1091
AccII CGCG 1 cut(s) 1072
AccIII TCCGGA 1 cut(s) 1023
AciI CCGC 3 cut(s) 520, 685, 1072
AclWI GGATC 4 cut(s) 285, 488, 1076, 1089
AcoI YGGCCR 1 cut(s) 1093
AcsI RAATTY 1 cut(s) 922
AcuI CTGAAG 1 cut(s) 1013
AfiI CCNNNNNNNGG 3 cut(s) 759, 1091, 1160
AjiI CACGTC 1 cut(s) 376
AjnI CCWGG 2 cut(s) 273, 712
AloI GAACNNNNNNTCC 2 cut(s) 618, 650
AluBI AGCT 7 cut(s) 325, 334, 440, 517, 820, 856, 1197
AluI AGCT 7 cut(s) 325, 334, 440, 517, 820, 856, 1197
Alw26I GTCTC 1 cut(s) 294
AlwI GGATC 4 cut(s) 285, 488, 1076, 1089
AlwNI CAGNNNCTG 1 cut(s) 292
Ama87I CYCGRG 1 cut(s) 86
Aor13HI TCCGGA 1 cut(s) 1023
AoxI GGCC 5 cut(s) 21, 83, 348, 529, 1093
ApeKI GCWGC 3 cut(s) 517, 853, 856
ApoI RAATTY 1 cut(s) 922
ArsI GACNNNNNNTTYG 2 cut(s) 1205, 1237
AspA2I CCTAGG 1 cut(s) 25
AspLEI GCGC 1 cut(s) 682
AspS9I GGNCC 3 cut(s) 22, 84, 977
AsuHPI GGTGA 3 cut(s) 238, 371, 1243
AvaI CYCGRG 1 cut(s) 86
AvaII GGWCC 1 cut(s) 977
AvrII CCTAGG 1 cut(s) 25
AxyI CCTNAGG 1 cut(s) 212
BaeGI GKGCMC 1 cut(s) 1005
BalI TGGCCA 1 cut(s) 1095
BamHI GGATCC 1 cut(s) 1081
BanI GGYRCC 1 cut(s) 1000
BbvCI CCTCAGC 1 cut(s) 335
BbvI GCAGC 3 cut(s) 504, 843, 865
BccI CCATC 8 cut(s) 548, 761, 839, 935, 1026, 1072, 1152, 1244
BciT130I CCWGG 2 cut(s) 275, 714
BclI TGATCA 1 cut(s) 930
BcoDI GTCTC 1 cut(s) 294
BfaI CTAG 6 cut(s) 26, 74, 644, 740, 821, 896
BfmI CTRYAG 1 cut(s) 615
BisI GCNGC 4 cut(s) 518, 854, 857, 1073
BlnI CCTAGG 1 cut(s) 25
BlsI GCNGC 4 cut(s) 519, 855, 858, 1074
Bme1390I CCNGG 2 cut(s) 275, 714
Bme18I GGWCC 1 cut(s) 977
BmeT110I CYCGRG 1 cut(s) 86
BmgBI CACGTC 1 cut(s) 376
BmgT120I GGNCC 3 cut(s) 22, 84, 977
BmiI GGNNCC 2 cut(s) 1002, 1083
BmrFI CCNGG 2 cut(s) 275, 714
BmrI ACTGGG 1 cut(s) 509
BmsI GCATC 5 cut(s) 139, 349, 419, 1020, 1180
BmuI ACTGGG 1 cut(s) 509
BoxI GACNNNNGTC 1 cut(s) 9
BplI GAGNNNNNCTC 2 cut(s) 989, 1021
Bpu10I CCTNAGC 1 cut(s) 335
BsaAI YACGTR 1 cut(s) 460
BsaBI GATNNNNATC 2 cut(s) 189, 752
BsaJI CCNNGG 3 cut(s) 25, 273, 355
BsaWI WCCGGW 1 cut(s) 1023
Bsc4I CCNNNNNNNGG 3 cut(s) 759, 1091, 1160
Bse1I ACTGG 1 cut(s) 504
Bse21I CCTNAGG 1 cut(s) 212
Bse8I GATNNNNATC 2 cut(s) 189, 752
BseAI TCCGGA 1 cut(s) 1023
BseBI CCWGG 2 cut(s) 275, 714
BseDI CCNNGG 3 cut(s) 25, 273, 355
BseGI GGATG 4 cut(s) 154, 434, 753, 1011
BseJI GATNNNNATC 2 cut(s) 189, 752
BseLI CCNNNNNNNGG 3 cut(s) 759, 1091, 1160
BseMII CTCAG 5 cut(s) 9, 203, 326, 901, 916
BseNI ACTGG 1 cut(s) 504
BseSI GKGCMC 1 cut(s) 1005
BseXI GCAGC 3 cut(s) 504, 843, 865
BsgI GTGCAG 1 cut(s) 872
Bsh1236I CGCG 1 cut(s) 1072
BshFI GGCC 5 cut(s) 23, 85, 350, 531, 1095
BshNI GGYRCC 1 cut(s) 1000
BsiHKCI CYCGRG 1 cut(s) 86
BsiSI CCGG 1 cut(s) 1024
BslFI GGGAC 1 cut(s) 930
BslI CCNNNNNNNGG 3 cut(s) 759, 1091, 1160
BsmAI GTCTC 1 cut(s) 294
BsmFI GGGAC 1 cut(s) 930
BsnI GGCC 5 cut(s) 23, 85, 350, 531, 1095
BsoBI CYCGRG 1 cut(s) 86
Bsp1286I GDGCHC 1 cut(s) 1005
Bsp13I TCCGGA 1 cut(s) 1023
Bsp143I GATC 6 cut(s) 277, 315, 480, 640, 930, 1081
Bsp19I CCATGG 1 cut(s) 355
BspACI CCGC 3 cut(s) 520, 685, 1072
BspANI GGCC 5 cut(s) 23, 85, 350, 531, 1095
BspCNI CTCAG 5 cut(s) 10, 204, 327, 900, 915
BspEI TCCGGA 1 cut(s) 1023
BspFNI CGCG 1 cut(s) 1072
BspLI GGNNCC 2 cut(s) 1002, 1083
BspMAI CTGCAG 1 cut(s) 619
BspPI GGATC 4 cut(s) 285, 488, 1076, 1089
BspQI GCTCTTC 1 cut(s) 1204
BspT107I GGYRCC 1 cut(s) 1000
BsrI ACTGG 1 cut(s) 504
BssECI CCNNGG 3 cut(s) 25, 273, 355
BssMI GATC 6 cut(s) 277, 315, 480, 640, 930, 1081
BssT1I CCWWGG 2 cut(s) 25, 355
Bst2UI CCWGG 2 cut(s) 275, 714
Bst4CI ACNGT 2 cut(s) 288, 453
Bst6I CTCTTC 2 cut(s) 960, 1204
BstBAI YACGTR 1 cut(s) 460
BstC8I GCNNGC 1 cut(s) 1195
BstDEI CTNAG 6 cut(s) 18, 212, 335, 887, 902, 1261
BstDSI CCRYGG 1 cut(s) 355
BstF5I GGATG 4 cut(s) 154, 434, 753, 1011
BstFNI CGCG 1 cut(s) 1072
BstHHI GCGC 1 cut(s) 682
BstKTI GATC 6 cut(s) 280, 318, 483, 643, 933, 1084
BstMAI GTCTC 1 cut(s) 294
BstMBI GATC 6 cut(s) 277, 315, 480, 640, 930, 1081
BstMWI GCNNNNNNNGC 4 cut(s) 331, 569, 836, 958
BstNI CCWGG 2 cut(s) 275, 714
BstNSI RCATGY 1 cut(s) 1057
BstPAI GACNNNNGTC 1 cut(s) 9
BstSCI CCNGG 2 cut(s) 273, 712
BstSFI CTRYAG 1 cut(s) 615
BstSLI GKGCMC 1 cut(s) 1005
BstUI CGCG 1 cut(s) 1072
BstV1I GCAGC 3 cut(s) 504, 843, 865
BstX2I RGATCY 2 cut(s) 277, 1081
BstYI RGATCY 2 cut(s) 277, 1081
Bsu36I CCTNAGG 1 cut(s) 212
BsuRI GGCC 5 cut(s) 23, 85, 350, 531, 1095
BtgI CCRYGG 1 cut(s) 355
BtrI CACGTC 1 cut(s) 376
BtsCI GGATG 4 cut(s) 154, 434, 753, 1011
Cac8I GCNNGC 1 cut(s) 1195
CaiI CAGNNNCTG 1 cut(s) 292
CfoI GCGC 1 cut(s) 682
Cfr13I GGNCC 3 cut(s) 22, 84, 977
CviAII CATG 9 cut(s) 145, 356, 416, 473, 629, 949, 1054, 1178, 1292
DdeI CTNAG 6 cut(s) 18, 212, 335, 887, 902, 1261
DpnI GATC 6 cut(s) 279, 317, 482, 642, 932, 1083
DpnII GATC 6 cut(s) 277, 315, 480, 640, 930, 1081
DrdI GACNNNNNNGTC 1 cut(s) 944
DseDI GACNNNNNNGTC 1 cut(s) 944
EaeI YGGCCR 1 cut(s) 1093
Eam1104I CTCTTC 2 cut(s) 960, 1204
EarI CTCTTC 2 cut(s) 960, 1204
Eco130I CCWWGG 2 cut(s) 25, 355
Eco147I AGGCCT 1 cut(s) 531
Eco47I GGWCC 1 cut(s) 977
Eco57I CTGAAG 1 cut(s) 1013
Eco81I CCTNAGG 1 cut(s) 212
Eco88I CYCGRG 1 cut(s) 86
EcoO109I RGGNCCY 1 cut(s) 22
EcoRII CCWGG 2 cut(s) 273, 712
EcoT14I CCWWGG 2 cut(s) 25, 355
ErhI CCWWGG 2 cut(s) 25, 355
FaeI CATG 9 cut(s) 148, 359, 419, 476, 632, 952, 1057, 1181, 1295
FaqI GGGAC 1 cut(s) 930
FatI CATG 9 cut(s) 144, 355, 415, 472, 628, 948, 1053, 1177, 1291
FauNDI CATATG 1 cut(s) 1168
FbaI TGATCA 1 cut(s) 930
Fnu4HI GCNGC 4 cut(s) 518, 854, 857, 1073
FokI GGATG 4 cut(s) 161, 441, 740, 998
Fsp4HI GCNGC 4 cut(s) 518, 854, 857, 1073
FspBI CTAG 6 cut(s) 26, 74, 644, 740, 821, 896
GlaI GCGC 1 cut(s) 681
GluI GCNGC 4 cut(s) 518, 854, 857, 1073
HaeIII GGCC 5 cut(s) 23, 85, 350, 531, 1095
HapII CCGG 1 cut(s) 1024
HhaI GCGC 1 cut(s) 682
Hin1II CATG 9 cut(s) 148, 359, 419, 476, 632, 952, 1057, 1181, 1295
Hin6I GCGC 1 cut(s) 680
HinP1I GCGC 1 cut(s) 680
HindIII AAGCTT 2 cut(s) 323, 438
HinfI GANTC 8 cut(s) 89, 242, 469, 599, 647, 776, 900, 1027
HpaII CCGG 1 cut(s) 1024
HphI GGTGA 3 cut(s) 238, 371, 1243
Hpy166II GTNNAC 1 cut(s) 1068
Hpy188I TCNGA 8 cut(s) 19, 129, 171, 882, 890, 1032, 1151, 1284
Hpy188III TCNNGA 7 cut(s) 98, 196, 239, 388, 644, 745, 1024
Hpy8I GTNNAC 1 cut(s) 1068
Hpy99I CGWCG 1 cut(s) 377
HpyAV CCTTC 6 cut(s) 413, 552, 803, 863, 988, 990
HpyCH4III ACNGT 2 cut(s) 288, 453
HpyCH4IV ACGT 4 cut(s) 200, 375, 459, 972
HpyCH4V TGCA 6 cut(s) 445, 617, 853, 859, 961, 1166
HpyF10VI GCNNNNNNNGC 4 cut(s) 331, 569, 836, 958
HpyF3I CTNAG 6 cut(s) 18, 212, 335, 887, 902, 1261
HpySE526I ACGT 4 cut(s) 200, 375, 459, 972
Hsp92II CATG 9 cut(s) 148, 359, 419, 476, 632, 952, 1057, 1181, 1295
HspAI GCGC 1 cut(s) 680
Kpn2I TCCGGA 1 cut(s) 1023
Ksp22I TGATCA 1 cut(s) 930
Kzo9I GATC 6 cut(s) 277, 315, 480, 640, 930, 1081
LguI GCTCTTC 1 cut(s) 1204
LmnI GCTCC 3 cut(s) 157, 687, 817
Lsp1109I GCAGC 3 cut(s) 504, 843, 865
LweI GCATC 5 cut(s) 139, 349, 419, 1020, 1180
MaeI CTAG 6 cut(s) 26, 74, 644, 740, 821, 896
MaeII ACGT 4 cut(s) 200, 375, 459, 972
MaeIII GTNAC 3 cut(s) 359, 1049, 1139
MalI GATC 6 cut(s) 279, 317, 482, 642, 932, 1083
MboI GATC 6 cut(s) 277, 315, 480, 640, 930, 1081
MboII GAAGA 6 cut(s) 89, 421, 563, 722, 947, 1191
MflI RGATCY 2 cut(s) 277, 1081
MhlI GDGCHC 1 cut(s) 1005
MlsI TGGCCA 1 cut(s) 1095
MluCI AATT 5 cut(s) 606, 668, 922, 1042, 1213
MluNI TGGCCA 1 cut(s) 1095
MlyI GAGTC 3 cut(s) 98, 236, 894
MmeI TCCRAC 3 cut(s) 698, 795, 955
Mox20I TGGCCA 1 cut(s) 1095
MroI TCCGGA 1 cut(s) 1023
MscI TGGCCA 1 cut(s) 1095
MseI TTAA 5 cut(s) 120, 206, 330, 509, 1041
MslI CAYNNNNRTG 1 cut(s) 1248
Msp20I TGGCCA 1 cut(s) 1095
MspA1I CMGCKG 2 cut(s) 517, 856
MspI CCGG 1 cut(s) 1024
MspR9I CCNGG 2 cut(s) 275, 714
MvaI CCWGG 2 cut(s) 275, 714
MvnI CGCG 1 cut(s) 1072
MwoI GCNNNNNNNGC 4 cut(s) 331, 569, 836, 958
NcoI CCATGG 1 cut(s) 355
NdeI CATATG 1 cut(s) 1168
NdeII GATC 6 cut(s) 277, 315, 480, 640, 930, 1081
NlaIII CATG 9 cut(s) 148, 359, 419, 476, 632, 952, 1057, 1181, 1295
NlaIV GGNNCC 2 cut(s) 1002, 1083
NmuCI GTSAC 2 cut(s) 359, 1049
NspI RCATGY 1 cut(s) 1057
PceI AGGCCT 1 cut(s) 531
PciSI GCTCTTC 1 cut(s) 1204
PfeI GAWTC 5 cut(s) 469, 599, 647, 776, 1027
PflMI CCANNNNNTGG 2 cut(s) 759, 1091
PkrI GCNGC 4 cut(s) 519, 855, 858, 1074
PleI GAGTC 3 cut(s) 97, 236, 894
PpsI GAGTC 3 cut(s) 97, 236, 894
Ppu21I YACGTR 1 cut(s) 460
PshAI GACNNNNGTC 1 cut(s) 9
Psp6I CCWGG 2 cut(s) 273, 712
PspGI CCWGG 2 cut(s) 273, 712
PspN4I GGNNCC 2 cut(s) 1002, 1083
PspPI GGNCC 3 cut(s) 22, 84, 977
PstI CTGCAG 1 cut(s) 619
PstNI CAGNNNCTG 1 cut(s) 292
PsuI RGATCY 2 cut(s) 277, 1081
PvuII CAGCTG 2 cut(s) 517, 856
RseI CAYNNNNRTG 1 cut(s) 1248
SapI GCTCTTC 1 cut(s) 1204
SaqAI TTAA 5 cut(s) 120, 206, 330, 509, 1041
SatI GCNGC 4 cut(s) 518, 854, 857, 1073
Sau3AI GATC 6 cut(s) 277, 315, 480, 640, 930, 1081
Sau96I GGNCC 3 cut(s) 22, 84, 977
SchI GAGTC 3 cut(s) 98, 236, 894
ScrFI CCNGG 2 cut(s) 275, 714
SduI GDGCHC 1 cut(s) 1005
SfaNI GCATC 5 cut(s) 139, 349, 419, 1020, 1180
SfcI CTRYAG 1 cut(s) 615
SinI GGWCC 1 cut(s) 977
SmiMI CAYNNNNRTG 1 cut(s) 1248
Sse9I AATT 5 cut(s) 606, 668, 922, 1042, 1213
SseBI AGGCCT 1 cut(s) 531
SsiI CCGC 3 cut(s) 520, 685, 1072
SspMI CTAG 6 cut(s) 26, 74, 644, 740, 821, 896
StuI AGGCCT 1 cut(s) 531
StyD4I CCNGG 2 cut(s) 273, 712
StyI CCWWGG 2 cut(s) 25, 355
TaaI ACNGT 2 cut(s) 288, 453
TaiI ACGT 4 cut(s) 203, 378, 462, 975
TaqI TCGA 4 cut(s) 99, 163, 1211, 1223
TasI AATT 5 cut(s) 606, 668, 922, 1042, 1213
TauI GCSGC 1 cut(s) 1075
TfiI GAWTC 5 cut(s) 469, 599, 647, 776, 1027
Tru1I TTAA 5 cut(s) 120, 206, 330, 509, 1041
Tru9I TTAA 5 cut(s) 120, 206, 330, 509, 1041
TseFI GTSAC 2 cut(s) 359, 1049
TseI GCWGC 3 cut(s) 517, 853, 856
Tsp45I GTSAC 2 cut(s) 359, 1049
TspDTI ATGAA 7 cut(s) 133, 315, 432, 602, 639, 645, 1185
TspGWI ACGGA 1 cut(s) 665
Van91I CCANNNNNTGG 2 cut(s) 759, 1091
VpaK11BI GGWCC 1 cut(s) 977
XapI RAATTY 1 cut(s) 922
XbaI TCTAGA 1 cut(s) 643
XceI RCATGY 1 cut(s) 1057
XmaJI CCTAGG 1 cut(s) 25
XspI CTAG 6 cut(s) 26, 74, 644, 740, 821, 896
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.