Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0003960

Physical Location & Seq

Genomic Coordinates Forward (+)

32498174 .. 32498946

Gene Structure 773 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1258900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGTTAAGGCAGCTGCAGAAGTTAGGCCTAAACAACTTGAAAGGGGAAGATGGAAGGGCTCTGTGTGCTTCTATTGACAAGATGAATCACCTTAAATGTCTAGATTTAAATGCAATAAGTGAAGATGAAGTCCTTGATCTAGAATCCATTTCAACTCCACCAGAATTTATTCGGTCTCTGTACTTGATGGGGCGTTTAGAGCAGTTGCCAAGTTGGATTTCAAATCTTCAACACCTCGTCAAATTGGGGATTTATCTTTCAAGGTTGAGAGATTCCCCATTGAAAGCCCTTCAAAATCTACCTAATCTGTCGGATCTTCGTTTGGGACAAATGGGATATGATGGCGGGCAACTGCATTTTGAGGGAGGAGGATTTCAGAAACTTAGGAAGCTAAAACTCGGGGAAATGGAGGGACTAAATTCACTGATCATAGACAATGGGGTTATGCCTCTTCTCCAAGAGTTCCACATTGGACCCTGCCCACAACTGAAGGAGGTGCCGTCTGGCATCCACCATCTCCGAAATCTGAGATATCTTTGGATTTATGACATGCCGAAGGAGTTTGCACAACAAATGGATCCAAATAATGGCCCACATTATTGGATTGTTAGACATATACGACATGTTGTTTTTAGTTACAAGTTTGACCCAGGATCTGGCGAATATGAAAGACACTCCCTGTATGATTCCGACTTTTCGTTTTGGTCGAATGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009626 GO:0009987 GO:0012501 GO:0016020 GO:0019897 GO:0019898 GO:0023052 GO:0033554 GO:0034050 GO:0036094 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

239

Amino Acids

27.37

Weight (kDa)

6.36

Isoelectric Point (pI)

50.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	2 - 181	6.6e-20	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003960)

Species	Orthologous Gene IDs
malus_domestica	MD00G1097800.v1.1 MD01G1186500.v1.1 MD01G1186600.v1.1 MD01G1186800.v1.1 MD01G1187000.v1.1 MD01G1187100.v1.1 MD07G1258600.v1.1 MD07G1258700.v1.1 MD07G1258800.v1.1 MD07G1258900.v1.1 MD07G1259200.v1.1 MD07G1259300.v1.1
prunus_persica	Prupe.2G283200_v2.0.a1 Prupe.2G283300_v2.0.a1 Prupe.2G283400_v2.0.a1
pyrus_communis	pycom01g19810 pycom01g19820 pycom01g19840 pycom01g19900 pycom07g23170 pycom07g23230 pycom07g23240 pycom07g23250 pycom07g23260
rosa_chinensis	RchiOBHm_Chr1g0375241
rosa_laevigata	RLG00000026676
rosa_multiflora	Rmu_co8330553.1_g000001 Rmu_sc0000554.1_g000032
rosa_roxburghii	Rroxscaffold_4G00282910
rosa_rugosa	Rorug01G0389400
rosa_samantha	Rh1AG400100 Rh1BG364400 Rh1DG395000
rosa_wichuraiana	Rw1G035520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	496
AccB7I	CCANNNNNTGG	2 cut(s)	587, 656
AciI	CCGC	1 cut(s)	345
AclWI	GGATC	4 cut(s)	321, 572, 585, 661
AcsI	RAATTY	2 cut(s)	164, 418
AcuI	CTGAAG	1 cut(s)	509
AfaI	GTAC	1 cut(s)	182
AfiI	CCNNNNNNNGG	2 cut(s)	587, 656
AflIII	ACRYGT	1 cut(s)	622
AgsI	TTSAA	7 cut(s)	40, 153, 222, 230, 261, 283, 293
AjnI	CCWGG	1 cut(s)	649
AjuI	GAANNNNNNNTTGG	2 cut(s)	202, 234
AluBI	AGCT	2 cut(s)	13, 391
AluI	AGCT	2 cut(s)	13, 391
Alw26I	GTCTC	1 cut(s)	180
AlwI	GGATC	4 cut(s)	321, 572, 585, 661
AlwNI	CAGNNNCTG	1 cut(s)	656
Ama87I	CYCGRG	1 cut(s)	398
AoxI	GGCC	2 cut(s)	25, 589
ApeKI	GCWGC	2 cut(s)	10, 13
ApoI	RAATTY	2 cut(s)	164, 418
Asp700I	GAANNNNTTC	1 cut(s)	168
AspS9I	GGNCC	2 cut(s)	473, 590
AsuHPI	GGTGA	1 cut(s)	80
AvaI	CYCGRG	1 cut(s)	398
AvaII	GGWCC	1 cut(s)	473
BamHI	GGATCC	1 cut(s)	577
BanI	GGYRCC	1 cut(s)	496
BanII	GRGCYC	1 cut(s)	61
BbvI	GCAGC	1 cut(s)	22
BccI	CCATC	4 cut(s)	44, 181, 335, 522
BceAI	ACGGC	1 cut(s)	484
BciT130I	CCWGG	1 cut(s)	651
BclI	TGATCA	1 cut(s)	426
BcoDI	GTCTC	1 cut(s)	180
BfaI	CTAG	2 cut(s)	101, 140
BfmI	CTRYAG	1 cut(s)	14
BisI	GCNGC	2 cut(s)	11, 14
BlsI	GCNGC	2 cut(s)	12, 15
Bme1390I	CCNGG	1 cut(s)	651
Bme18I	GGWCC	1 cut(s)	473
BmeT110I	CYCGRG	1 cut(s)	398
BmgT120I	GGNCC	2 cut(s)	473, 590
BmiI	GGNNCC	3 cut(s)	475, 498, 579
BmrFI	CCNGG	1 cut(s)	651
BmsI	GCATC	1 cut(s)	516
BsaI	GGTCTC	1 cut(s)	180
BsaJI	CCNNGG	1 cut(s)	649
BsaXI	ACNNNNNCTCC	2 cut(s)	485, 515
Bsc4I	CCNNNNNNNGG	2 cut(s)	587, 656
BseBI	CCWGG	1 cut(s)	651
BseDI	CCNNGG	1 cut(s)	649
BseGI	GGATG	1 cut(s)	507
BseLI	CCNNNNNNNGG	2 cut(s)	587, 656
BseMII	CTCAG	1 cut(s)	518
BseRI	GAGGAG	1 cut(s)	381
BseXI	GCAGC	1 cut(s)	22
BshFI	GGCC	2 cut(s)	27, 591
BshNI	GGYRCC	1 cut(s)	496
BsiHKCI	CYCGRG	1 cut(s)	398
BslFI	GGGAC	2 cut(s)	339, 426
BslI	CCNNNNNNNGG	2 cut(s)	587, 656
BsmAI	GTCTC	1 cut(s)	180
BsmFI	GGGAC	2 cut(s)	339, 426
BsmI	GAATGC	1 cut(s)	715
BsnI	GGCC	2 cut(s)	27, 591
Bso31I	GGTCTC	1 cut(s)	180
BsoBI	CYCGRG	1 cut(s)	398
Bsp1286I	GDGCHC	1 cut(s)	61
Bsp143I	GATC	5 cut(s)	136, 313, 426, 577, 653
BspACI	CCGC	1 cut(s)	345
BspANI	GGCC	2 cut(s)	27, 591
BspCNI	CTCAG	1 cut(s)	519
BspLI	GGNNCC	3 cut(s)	475, 498, 579
BspMAI	CTGCAG	1 cut(s)	18
BspPI	GGATC	4 cut(s)	321, 572, 585, 661
BspT107I	GGYRCC	1 cut(s)	496
BspTNI	GGTCTC	1 cut(s)	180
BssECI	CCNNGG	1 cut(s)	649
BssMI	GATC	5 cut(s)	136, 313, 426, 577, 653
Bst2UI	CCWGG	1 cut(s)	651
Bst6I	CTCTTC	1 cut(s)	456
BstC8I	GCNNGC	1 cut(s)	347
BstDEI	CTNAG	2 cut(s)	383, 527
BstF5I	GGATG	1 cut(s)	507
BstKTI	GATC	5 cut(s)	139, 316, 429, 580, 656
BstMAI	GTCTC	1 cut(s)	180
BstMBI	GATC	5 cut(s)	136, 313, 426, 577, 653
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 199
BstNI	CCWGG	1 cut(s)	651
BstNSI	RCATGY	2 cut(s)	553, 626
BstSCI	CCNGG	1 cut(s)	649
BstSFI	CTRYAG	1 cut(s)	14
BstV1I	GCAGC	1 cut(s)	22
BstX2I	RGATCY	3 cut(s)	313, 577, 653
BstXI	CCANNNNNNTGG	1 cut(s)	600
BstYI	RGATCY	3 cut(s)	313, 577, 653
BsuRI	GGCC	2 cut(s)	27, 591
BtsCI	GGATG	1 cut(s)	507
BtsIMutI	CAGTG	1 cut(s)	422
Cac8I	GCNNGC	1 cut(s)	347
CaiI	CAGNNNCTG	1 cut(s)	656
Cfr13I	GGNCC	2 cut(s)	473, 590
Csp6I	GTAC	1 cut(s)	181
CviAII	CATG	2 cut(s)	550, 623
CviJI	RGCY	6 cut(s)	13, 27, 59, 287, 391, 591
CviKI_1	RGCY	6 cut(s)	13, 27, 59, 287, 391, 591
CviQI	GTAC	1 cut(s)	181
DdeI	CTNAG	2 cut(s)	383, 527
DpnI	GATC	5 cut(s)	138, 315, 428, 579, 655
DpnII	GATC	5 cut(s)	136, 313, 426, 577, 653
DraI	TTTAAA	1 cut(s)	108
Eam1104I	CTCTTC	1 cut(s)	456
EarI	CTCTTC	1 cut(s)	456
Eco147I	AGGCCT	1 cut(s)	27
Eco24I	GRGCYC	1 cut(s)	61
Eco31I	GGTCTC	1 cut(s)	180
Eco32I	GATATC	1 cut(s)	533
Eco47I	GGWCC	1 cut(s)	473
Eco57I	CTGAAG	1 cut(s)	509
Eco88I	CYCGRG	1 cut(s)	398
EcoRII	CCWGG	1 cut(s)	649
EcoRV	GATATC	1 cut(s)	533
EcoT38I	GRGCYC	1 cut(s)	61
FaeI	CATG	2 cut(s)	553, 626
FaqI	GGGAC	2 cut(s)	339, 426
FatI	CATG	2 cut(s)	549, 622
FauI	CCCGC	1 cut(s)	338
FbaI	TGATCA	1 cut(s)	426
Fnu4HI	GCNGC	2 cut(s)	11, 14
FokI	GGATG	1 cut(s)	494
FriOI	GRGCYC	1 cut(s)	61
Fsp4HI	GCNGC	2 cut(s)	11, 14
FspBI	CTAG	2 cut(s)	101, 140
GluI	GCNGC	2 cut(s)	11, 14
HaeIII	GGCC	2 cut(s)	27, 591
Hin1II	CATG	2 cut(s)	553, 626
HinfI	GANTC	4 cut(s)	85, 143, 272, 686
HphI	GGTGA	1 cut(s)	80
Hpy188I	TCNGA	5 cut(s)	313, 378, 521, 528, 691
Hpy188III	TCNNGA	2 cut(s)	101, 140
HpyAV	CCTTC	4 cut(s)	48, 299, 484, 550
HpyCH4V	TGCA	4 cut(s)	16, 113, 355, 566
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 199
HpyF3I	CTNAG	2 cut(s)	383, 527
Hsp92II	CATG	2 cut(s)	553, 626
Ksp22I	TGATCA	1 cut(s)	426
Kzo9I	GATC	5 cut(s)	136, 313, 426, 577, 653
LpnPI	CCDG	7 cut(s)	174, 489, 490, 636, 642, 663, 692
Lsp1109I	GCAGC	1 cut(s)	22
LweI	GCATC	1 cut(s)	516
MaeI	CTAG	2 cut(s)	101, 140
MaeIII	GTNAC	1 cut(s)	635
MalI	GATC	5 cut(s)	138, 315, 428, 579, 655
MboI	GATC	5 cut(s)	136, 313, 426, 577, 653
MboII	GAAGA	5 cut(s)	59, 134, 218, 308, 443
MflI	RGATCY	3 cut(s)	313, 577, 653
MhlI	GDGCHC	1 cut(s)	61
MluCI	AATT	3 cut(s)	164, 242, 418
MmeI	TCCRAC	3 cut(s)	194, 291, 714
MnlI	CCTC	7 cut(s)	245, 355, 359, 362, 403, 459, 487
MroXI	GAANNNNTTC	1 cut(s)	168
MseI	TTAA	3 cut(s)	5, 93, 107
MspA1I	CMGCKG	1 cut(s)	13
MspR9I	CCNGG	1 cut(s)	651
Mva1269I	GAATGC	1 cut(s)	715
MvaI	CCWGG	1 cut(s)	651
MwoI	GCNNNNNNNGC	2 cut(s)	65, 199
NdeII	GATC	5 cut(s)	136, 313, 426, 577, 653
NlaIII	CATG	2 cut(s)	553, 626
NlaIV	GGNNCC	3 cut(s)	475, 498, 579
NspI	RCATGY	2 cut(s)	553, 626
PceI	AGGCCT	1 cut(s)	27
PciI	ACATGT	1 cut(s)	622
PcsI	WCGNNNNNNNCGW	1 cut(s)	704
PctI	GAATGC	1 cut(s)	715
PdmI	GAANNNNTTC	1 cut(s)	168
PfeI	GAWTC	4 cut(s)	85, 143, 272, 686
PflMI	CCANNNNNTGG	2 cut(s)	587, 656
PkrI	GCNGC	2 cut(s)	12, 15
PscI	ACATGT	1 cut(s)	622
Psp6I	CCWGG	1 cut(s)	649
PspGI	CCWGG	1 cut(s)	649
PspN4I	GGNNCC	3 cut(s)	475, 498, 579
PspPI	GGNCC	2 cut(s)	473, 590
PstI	CTGCAG	1 cut(s)	18
PstNI	CAGNNNCTG	1 cut(s)	656
PsuI	RGATCY	3 cut(s)	313, 577, 653
PvuII	CAGCTG	1 cut(s)	13
RsaI	GTAC	1 cut(s)	182
RsaNI	GTAC	1 cut(s)	181
SaqAI	TTAA	3 cut(s)	5, 93, 107
SatI	GCNGC	2 cut(s)	11, 14
Sau3AI	GATC	5 cut(s)	136, 313, 426, 577, 653
Sau96I	GGNCC	2 cut(s)	473, 590
ScrFI	CCNGG	1 cut(s)	651
SduI	GDGCHC	1 cut(s)	61
SetI	ASST	7 cut(s)	15, 93, 237, 266, 304, 393, 498
SfaNI	GCATC	1 cut(s)	516
SfcI	CTRYAG	1 cut(s)	14
SinI	GGWCC	1 cut(s)	473
SmiI	ATTTAAAT	1 cut(s)	108
Sse9I	AATT	3 cut(s)	164, 242, 418
SseBI	AGGCCT	1 cut(s)	27
SsiI	CCGC	1 cut(s)	345
SspMI	CTAG	2 cut(s)	101, 140
StuI	AGGCCT	1 cut(s)	27
StyD4I	CCNGG	1 cut(s)	649
SwaI	ATTTAAAT	1 cut(s)	108
TaqI	TCGA	1 cut(s)	707
TaqII	GACCGA	1 cut(s)	162
TasI	AATT	3 cut(s)	164, 242, 418
TatI	WGTACW	1 cut(s)	180
TfiI	GAWTC	4 cut(s)	85, 143, 272, 686
Tru1I	TTAA	3 cut(s)	5, 93, 107
Tru9I	TTAA	3 cut(s)	5, 93, 107
TscAI	CASTG	1 cut(s)	429
TseI	GCWGC	2 cut(s)	10, 13
TspDTI	ATGAA	3 cut(s)	98, 141, 681
TspRI	CASTG	1 cut(s)	429
Van91I	CCANNNNNTGG	2 cut(s)	587, 656
VpaK11BI	GGWCC	1 cut(s)	473
XapI	RAATTY	2 cut(s)	164, 418
XbaI	TCTAGA	2 cut(s)	100, 139
XceI	RCATGY	2 cut(s)	553, 626
XmnI	GAANNNNTTC	1 cut(s)	168
XspI	CTAG	2 cut(s)	101, 140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.