Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0003960

Physical Location & Seq

Genomic Coordinates Forward (+)

24240644 .. 24241278

Gene Structure 635 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g23260.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGTGGAGGCAGCTACGGAAGTTGGGCCTAAAAAAATTGAAACGTGAAGATGGAAGGGCTCTGTGTGCTTCTATTGAAAGGATGAATCGCCTTGAATCTCTAGAATTAAGTGCAATAAGTGAAGATGAAGCCCTTGATCTAGAATCCATTTCAACTCCACCAGAATTTATTCGGTCTCTGTGGTTGAAGGGGCGTTTAGAGCAGTTGCCAAGTTGGATTTCAAATCTTCAACACCTCGTCAGATTGGTGATTCATTGGTCAAGGTTGAGAGATTCCCCATTGAAAGCCCTTCAAAATCTACCTAATCTGTTGGATCTTCGTTTGGGACAAATGGGATATGAGGGCGGGCAGCTGCATTTTGAGGAAGGAGGATTTCAGAAACTTAGGAAGCTACTACTCGGGGAAATGCAGGGACTAAATTCACTGATCGATAGACAATGGGGTTATGCCTCTTCTCCAAGAGTTTCACATTCGATCTTGCCCACAGCTGAAGGAGGTGCCATCTGGCATCCACCATCTTCGACATCTGAGACATCTTGCGTTTTTTGGCATGACGAAGGAGTTTGCACGACAAATGGATCCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009626 GO:0009987 GO:0012501 GO:0016020 GO:0019897 GO:0019898 GO:0023052 GO:0033554 GO:0034050 GO:0036094 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

196

Amino Acids

22.14

Weight (kDa)

7.79

Isoelectric Point (pI)

52.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003960)

Species	Orthologous Gene IDs
malus_domestica	MD00G1097800.v1.1 MD01G1186500.v1.1 MD01G1186600.v1.1 MD01G1186800.v1.1 MD01G1187000.v1.1 MD01G1187100.v1.1 MD07G1258600.v1.1 MD07G1258700.v1.1 MD07G1258800.v1.1 MD07G1258900.v1.1 MD07G1259200.v1.1 MD07G1259300.v1.1
prunus_persica	Prupe.2G283200_v2.0.a1 Prupe.2G283300_v2.0.a1 Prupe.2G283400_v2.0.a1
pyrus_communis	pycom01g19810 pycom01g19820 pycom01g19840 pycom01g19900 pycom07g23170 pycom07g23230 pycom07g23240 pycom07g23250 pycom07g23260
rosa_chinensis	RchiOBHm_Chr1g0375241
rosa_laevigata	RLG00000026676
rosa_multiflora	Rmu_co8330553.1_g000001 Rmu_sc0000554.1_g000032
rosa_roxburghii	Rroxscaffold_4G00282910
rosa_rugosa	Rorug01G0389400
rosa_samantha	Rh1AG400100 Rh1BG364400 Rh1DG395000
rosa_wichuraiana	Rw1G035520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	497
AciI	CCGC	1 cut(s)	345
AclWI	GGATC	3 cut(s)	321, 573, 586
AcsI	RAATTY	2 cut(s)	164, 418
AcuI	CTGAAG	1 cut(s)	510
AgsI	TTSAA	9 cut(s)	40, 77, 95, 153, 187, 222, 230, 283, 293
AjuI	GAANNNNNNNTTGG	2 cut(s)	202, 234
AluBI	AGCT	4 cut(s)	13, 352, 391, 488
AluI	AGCT	4 cut(s)	13, 352, 391, 488
Alw26I	GTCTC	2 cut(s)	180, 524
AlwI	GGATC	3 cut(s)	321, 573, 586
Ama87I	CYCGRG	1 cut(s)	398
AoxI	GGCC	1 cut(s)	25
ApeKI	GCWGC	3 cut(s)	10, 349, 352
ApoI	RAATTY	2 cut(s)	164, 418
Asp700I	GAANNNNTTC	1 cut(s)	168
AspS9I	GGNCC	1 cut(s)	25
AsuHPI	GGTGA	1 cut(s)	259
AvaI	CYCGRG	1 cut(s)	398
BamHI	GGATCC	1 cut(s)	578
BanI	GGYRCC	1 cut(s)	497
BanII	GRGCYC	1 cut(s)	61
BbvI	GCAGC	3 cut(s)	22, 339, 361
BccI	CCATC	3 cut(s)	44, 509, 523
BcoDI	GTCTC	2 cut(s)	180, 524
BfaI	CTAG	2 cut(s)	101, 140
BisI	GCNGC	3 cut(s)	11, 350, 353
BlsI	GCNGC	3 cut(s)	12, 351, 354
BmeT110I	CYCGRG	1 cut(s)	398
BmgT120I	GGNCC	1 cut(s)	25
BmiI	GGNNCC	2 cut(s)	499, 580
BmsI	GCATC	1 cut(s)	517
Bsa29I	ATCGAT	1 cut(s)	429
BsaI	GGTCTC	1 cut(s)	180
BseCI	ATCGAT	1 cut(s)	429
BseGI	GGATG	2 cut(s)	87, 508
BseMII	CTCAG	1 cut(s)	519
BseXI	GCAGC	3 cut(s)	22, 339, 361
BshFI	GGCC	1 cut(s)	27
BshNI	GGYRCC	1 cut(s)	497
BshVI	ATCGAT	1 cut(s)	429
BsiHKCI	CYCGRG	1 cut(s)	398
BslFI	GGGAC	2 cut(s)	339, 426
BsmAI	GTCTC	2 cut(s)	180, 524
BsmFI	GGGAC	2 cut(s)	339, 426
BsnI	GGCC	1 cut(s)	27
Bso31I	GGTCTC	1 cut(s)	180
BsoBI	CYCGRG	1 cut(s)	398
Bsp1286I	GDGCHC	1 cut(s)	61
Bsp143I	GATC	5 cut(s)	136, 313, 426, 474, 578
BspACI	CCGC	1 cut(s)	345
BspANI	GGCC	1 cut(s)	27
BspCNI	CTCAG	1 cut(s)	520
BspDI	ATCGAT	1 cut(s)	429
BspLI	GGNNCC	2 cut(s)	499, 580
BspPI	GGATC	3 cut(s)	321, 573, 586
BspT107I	GGYRCC	1 cut(s)	497
BspTNI	GGTCTC	1 cut(s)	180
BssMI	GATC	5 cut(s)	136, 313, 426, 474, 578
Bst6I	CTCTTC	1 cut(s)	457
BstC8I	GCNNGC	1 cut(s)	347
BstDEI	CTNAG	2 cut(s)	383, 528
BstF5I	GGATG	2 cut(s)	87, 508
BstKTI	GATC	5 cut(s)	139, 316, 429, 477, 581
BstMAI	GTCTC	2 cut(s)	180, 524
BstMBI	GATC	5 cut(s)	136, 313, 426, 474, 578
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 199
BstV1I	GCAGC	3 cut(s)	22, 339, 361
BstX2I	RGATCY	2 cut(s)	313, 578
BstYI	RGATCY	2 cut(s)	313, 578
Bsu15I	ATCGAT	1 cut(s)	429
BsuRI	GGCC	1 cut(s)	27
BsuTUI	ATCGAT	1 cut(s)	429
BtsCI	GGATG	2 cut(s)	87, 508
BtsIMutI	CAGTG	1 cut(s)	422
Cac8I	GCNNGC	1 cut(s)	347
Cfr13I	GGNCC	1 cut(s)	25
ClaI	ATCGAT	1 cut(s)	429
CviAII	CATG	1 cut(s)	551
CviJI	RGCY	8 cut(s)	13, 27, 59, 131, 287, 352, 391, 488
CviKI_1	RGCY	8 cut(s)	13, 27, 59, 131, 287, 352, 391, 488
DdeI	CTNAG	2 cut(s)	383, 528
DpnI	GATC	5 cut(s)	138, 315, 428, 476, 580
DpnII	GATC	5 cut(s)	136, 313, 426, 474, 578
Eam1104I	CTCTTC	1 cut(s)	457
EarI	CTCTTC	1 cut(s)	457
Eco24I	GRGCYC	1 cut(s)	61
Eco31I	GGTCTC	1 cut(s)	180
Eco57I	CTGAAG	1 cut(s)	510
Eco88I	CYCGRG	1 cut(s)	398
EcoT38I	GRGCYC	1 cut(s)	61
FaeI	CATG	1 cut(s)	554
FaiI	YATR	3 cut(s)	339, 447, 552
FaqI	GGGAC	2 cut(s)	339, 426
FatI	CATG	1 cut(s)	550
FauI	CCCGC	1 cut(s)	338
Fnu4HI	GCNGC	3 cut(s)	11, 350, 353
FokI	GGATG	2 cut(s)	94, 495
FriOI	GRGCYC	1 cut(s)	61
Fsp4HI	GCNGC	3 cut(s)	11, 350, 353
FspBI	CTAG	2 cut(s)	101, 140
GluI	GCNGC	3 cut(s)	11, 350, 353
HaeIII	GGCC	1 cut(s)	27
Hin1II	CATG	1 cut(s)	554
HinfI	GANTC	5 cut(s)	85, 95, 143, 250, 272
HphI	GGTGA	1 cut(s)	259
Hpy188I	TCNGA	3 cut(s)	242, 378, 529
Hpy188III	TCNNGA	2 cut(s)	101, 140
HpyAV	CCTTC	6 cut(s)	48, 181, 299, 359, 485, 551
HpyCH4IV	ACGT	1 cut(s)	43
HpyCH4V	TGCA	4 cut(s)	113, 355, 409, 567
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 199
HpyF3I	CTNAG	2 cut(s)	383, 528
HpySE526I	ACGT	1 cut(s)	43
Hsp92II	CATG	1 cut(s)	554
Kzo9I	GATC	5 cut(s)	136, 313, 426, 474, 578
LpnPI	CCDG	3 cut(s)	174, 395, 490
Lsp1109I	GCAGC	3 cut(s)	22, 339, 361
LweI	GCATC	1 cut(s)	517
MaeI	CTAG	2 cut(s)	101, 140
MaeII	ACGT	1 cut(s)	43
MalI	GATC	5 cut(s)	138, 315, 428, 476, 580
MboI	GATC	5 cut(s)	136, 313, 426, 474, 578
MboII	GAAGA	6 cut(s)	59, 134, 218, 308, 444, 510
MflI	RGATCY	2 cut(s)	313, 578
MhlI	GDGCHC	1 cut(s)	61
MluCI	AATT	4 cut(s)	35, 104, 164, 418
MmeI	TCCRAC	2 cut(s)	194, 291
MnlI	CCTC	6 cut(s)	245, 334, 355, 362, 460, 488
MroXI	GAANNNNTTC	1 cut(s)	168
MseI	TTAA	1 cut(s)	107
MspA1I	CMGCKG	2 cut(s)	352, 488
MwoI	GCNNNNNNNGC	2 cut(s)	65, 199
NdeII	GATC	5 cut(s)	136, 313, 426, 474, 578
NlaIII	CATG	1 cut(s)	554
NlaIV	GGNNCC	2 cut(s)	499, 580
PdmI	GAANNNNTTC	1 cut(s)	168
PfeI	GAWTC	5 cut(s)	85, 95, 143, 250, 272
PkrI	GCNGC	3 cut(s)	12, 351, 354
PspN4I	GGNNCC	2 cut(s)	499, 580
PspPI	GGNCC	1 cut(s)	25
PsuI	RGATCY	2 cut(s)	313, 578
PvuII	CAGCTG	2 cut(s)	352, 488
SaqAI	TTAA	1 cut(s)	107
SatI	GCNGC	3 cut(s)	11, 350, 353
Sau3AI	GATC	5 cut(s)	136, 313, 426, 474, 578
Sau96I	GGNCC	1 cut(s)	25
SduI	GDGCHC	1 cut(s)	61
SetI	ASST	9 cut(s)	15, 46, 237, 266, 304, 354, 393, 490, 499
SfaNI	GCATC	1 cut(s)	517
Sse9I	AATT	4 cut(s)	35, 104, 164, 418
SsiI	CCGC	1 cut(s)	345
SspMI	CTAG	2 cut(s)	101, 140
TaiI	ACGT	1 cut(s)	46
TaqI	TCGA	3 cut(s)	429, 473, 521
TaqII	GACCGA	1 cut(s)	162
TasI	AATT	4 cut(s)	35, 104, 164, 418
TfiI	GAWTC	5 cut(s)	85, 95, 143, 250, 272
Tru1I	TTAA	1 cut(s)	107
Tru9I	TTAA	1 cut(s)	107
TscAI	CASTG	1 cut(s)	429
TseI	GCWGC	3 cut(s)	10, 349, 352
TspDTI	ATGAA	3 cut(s)	98, 141, 242
TspGWI	ACGGA	1 cut(s)	31
TspRI	CASTG	1 cut(s)	429
XapI	RAATTY	2 cut(s)	164, 418
XbaI	TCTAGA	2 cut(s)	100, 139
XmnI	GAANNNNTTC	1 cut(s)	168
XspI	CTAG	2 cut(s)	101, 140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.