Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0003960

Physical Location & Seq

Genomic Coordinates Forward (+)

24207140 .. 24208210

Gene Structure 1071 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g23170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGGATGCTCCAATCAATCAACTTCCGAAATATGTGGGGGATTTGTATCTCTTGACATACTTAAGCCTGAGGAATACAAAGGTGAAGTTGCTTCCAAACTCCATAGGCAATCTGCAAAACTTAGAAACCCTGGATCTAAAAGAGTCTTTGGTGTATGAAATACCGACCAAGATCAATAAGCTTGTTAAGCTGCGGCATCTTTTGGCCTACTATCGCGACGACAACATGGATTTTTGCATAAATAGGCAAAGAGGAGTGAAGATGCATGAAGGTATTGGATGCTTACAAGCTTTGCAAAAGCTGTACCATGTGGAGGCGAATCATGGAGGGATCAAGCTAATCAAAGAACTGGGAAACTTAAGGCAGCTGCGGAAGTTGGGCCTAAAAAAATTGAAACGTGAAGATGGAAGGGCTCTGTGTGCTTCTATTGAAAAGATGAAAGACCTTGAAACTCTAGATTTTAGTGCAATAAGTGAAGATGAAGTCATCGATCTACAATCCATTTCAACTCCACCACAATCTATTCGGTCTCTGTACTTGAAGGGGCGTTTAGAGCAGTTGCCAAGTTGGATTTCAAATCTTCAACACCTCGTCAAATTGGGGATTCAGTGGTCAAGGTTGAGAGATTCTCCATTGACAGCCCTTCAAAATCTACCCAATCTGATGGAGCTTCGTGTGGGAAAAATGGGATATGATGGCGGGCAGCTGCATTTTGAGGGAGGAGGATTTCAGAGACTTAGGGAGCTCGTACTCTCGGAAATGGAGGGACTAAATTCGTTGATCATAGACAATGGGGTTATGCCTCGTCTCCAAGAGCTTTACATTGGACATTGCCCACAACTGAAGGAGGTGCCATCTGGGATCCAGCATCTCCGACATCTGAGAGATCTTGTGTTTTATGGCATGACGAAGGAGTTTGCACGACAGATCGATCCAAATAATGGCCCACATTATTGGACTGTTAAACATATACGACAAGTTCGTGTTGCTTACGAGCCTGGCCCGAGAATTGGCCAATATAAAGCCCACTCCCTTAATGATCTCGACTTTTCGTCTTGGTTGAATGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009626 GO:0009987 GO:0012501 GO:0016020 GO:0019897 GO:0019898 GO:0023052 GO:0033554 GO:0034050 GO:0036094 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

357

Amino Acids

40.85

Weight (kDa)

9.14

Isoelectric Point (pI)

45.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	10 - 299	6.5e-47	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003960)

Species	Orthologous Gene IDs
malus_domestica	MD00G1097800.v1.1 MD01G1186500.v1.1 MD01G1186600.v1.1 MD01G1186800.v1.1 MD01G1187000.v1.1 MD01G1187100.v1.1 MD07G1258600.v1.1 MD07G1258700.v1.1 MD07G1258800.v1.1 MD07G1258900.v1.1 MD07G1259200.v1.1 MD07G1259300.v1.1
prunus_persica	Prupe.2G283200_v2.0.a1 Prupe.2G283300_v2.0.a1 Prupe.2G283400_v2.0.a1
pyrus_communis	pycom01g19810 pycom01g19820 pycom01g19840 pycom01g19900 pycom07g23170 pycom07g23230 pycom07g23240 pycom07g23250 pycom07g23260
rosa_chinensis	RchiOBHm_Chr1g0375241
rosa_laevigata	RLG00000026676
rosa_multiflora	Rmu_co8330553.1_g000001 Rmu_sc0000554.1_g000032
rosa_roxburghii	Rroxscaffold_4G00282910
rosa_rugosa	Rorug01G0389400
rosa_samantha	Rh1AG400100 Rh1BG364400 Rh1DG395000
rosa_wichuraiana	Rw1G035520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	850
AccB7I	CCANNNNNTGG	1 cut(s)	941
AccII	CGCG	1 cut(s)	216
AciI	CCGC	3 cut(s)	193, 370, 699
AclWI	GGATC	5 cut(s)	141, 338, 856, 869, 926
AcoI	YGGCCR	1 cut(s)	1012
AcsI	RAATTY	1 cut(s)	772
AcuI	CTGAAG	1 cut(s)	863
AfaI	GTAC	3 cut(s)	305, 536, 750
AfiI	CCNNNNNNNGG	3 cut(s)	313, 941, 1010
AflII	CTTAAG	2 cut(s)	61, 358
AgsI	TTSAA	9 cut(s)	394, 431, 449, 507, 541, 576, 584, 647, 1063
AhdI	GACNNNNNGTC	1 cut(s)	1051
AjnI	CCWGG	2 cut(s)	129, 997
AjuI	GAANNNNNNNTTGG	2 cut(s)	556, 588
Alw21I	GWGCWC	1 cut(s)	747
Alw26I	GTCTC	3 cut(s)	534, 727, 812
AlwI	GGATC	5 cut(s)	141, 338, 856, 869, 926
Ama87I	CYCGRG	1 cut(s)	1003
AoxI	GGCC	5 cut(s)	204, 379, 943, 1000, 1012
ApeKI	GCWGC	5 cut(s)	190, 364, 367, 703, 706
ApoI	RAATTY	1 cut(s)	772
AspS9I	GGNCC	3 cut(s)	379, 944, 1001
AsuHPI	GGTGA	1 cut(s)	94
AvaI	CYCGRG	1 cut(s)	1003
AxyI	CCTNAGG	1 cut(s)	68
BalI	TGGCCA	1 cut(s)	1014
BamHI	GGATCC	1 cut(s)	861
BanI	GGYRCC	1 cut(s)	850
BanII	GRGCYC	2 cut(s)	415, 747
Bbv12I	GWGCWC	1 cut(s)	747
BbvI	GCAGC	5 cut(s)	177, 354, 376, 693, 715
BccI	CCATC	4 cut(s)	398, 658, 689, 862
BciT130I	CCWGG	2 cut(s)	131, 999
BclI	TGATCA	1 cut(s)	780
BcoDI	GTCTC	3 cut(s)	534, 727, 812
BfaI	CTAG	1 cut(s)	455
BfrI	CTTAAG	2 cut(s)	61, 358
BglII	AGATCT	1 cut(s)	886
BisI	GCNGC	6 cut(s)	191, 194, 365, 368, 704, 707
BlsI	GCNGC	6 cut(s)	192, 195, 366, 369, 705, 708
Bme1390I	CCNGG	2 cut(s)	131, 999
BmeRI	GACNNNNNGTC	1 cut(s)	1051
BmeT110I	CYCGRG	1 cut(s)	1003
BmgT120I	GGNCC	3 cut(s)	379, 944, 1001
BmiI	GGNNCC	2 cut(s)	852, 863
BmrFI	CCNGG	2 cut(s)	131, 999
BmrI	ACTGGG	1 cut(s)	359
BmsI	GCATC	4 cut(s)	205, 252, 269, 877
BmuI	ACTGGG	1 cut(s)	359
BplI	GAGNNNNNCTC	2 cut(s)	613, 645
Bsa29I	ATCGAT	2 cut(s)	489, 930
BsaBI	GATNNNNATC	1 cut(s)	45
BsaI	GGTCTC	1 cut(s)	534
BsaJI	CCNNGG	1 cut(s)	129
Bsc4I	CCNNNNNNNGG	3 cut(s)	313, 941, 1010
Bse1I	ACTGG	1 cut(s)	354
Bse21I	CCTNAGG	1 cut(s)	68
Bse3DI	GCAATG	1 cut(s)	829
Bse8I	GATNNNNATC	1 cut(s)	45
BseBI	CCWGG	2 cut(s)	131, 999
BseCI	ATCGAT	2 cut(s)	489, 930
BseDI	CCNNGG	1 cut(s)	129
BseGI	GGATG	2 cut(s)	10, 284
BseJI	GATNNNNATC	1 cut(s)	45
BseLI	CCNNNNNNNGG	3 cut(s)	313, 941, 1010
BseMI	GCAATG	1 cut(s)	829
BseMII	CTCAG	2 cut(s)	59, 872
BseNI	ACTGG	1 cut(s)	354
BseRI	GAGGAG	2 cut(s)	267, 735
BseXI	GCAGC	5 cut(s)	177, 354, 376, 693, 715
Bsh1236I	CGCG	1 cut(s)	216
BshFI	GGCC	5 cut(s)	206, 381, 945, 1002, 1014
BshNI	GGYRCC	1 cut(s)	850
BshVI	ATCGAT	2 cut(s)	489, 930
BsiHKAI	GWGCWC	1 cut(s)	747
BsiHKCI	CYCGRG	1 cut(s)	1003
BslFI	GGGAC	1 cut(s)	780
BslI	CCNNNNNNNGG	3 cut(s)	313, 941, 1010
BsmAI	GTCTC	3 cut(s)	534, 727, 812
BsmBI	CGTCTC	1 cut(s)	812
BsmFI	GGGAC	1 cut(s)	780
BsmI	GAATGC	1 cut(s)	1069
BsnI	GGCC	5 cut(s)	206, 381, 945, 1002, 1014
Bso31I	GGTCTC	1 cut(s)	534
BsoBI	CYCGRG	1 cut(s)	1003
Bsp1286I	GDGCHC	2 cut(s)	415, 747
Bsp68I	TCGCGA	1 cut(s)	216
BspACI	CCGC	3 cut(s)	193, 370, 699
BspANI	GGCC	5 cut(s)	206, 381, 945, 1002, 1014
BspCNI	CTCAG	2 cut(s)	60, 873
BspDI	ATCGAT	2 cut(s)	489, 930
BspFNI	CGCG	1 cut(s)	216
BspLI	GGNNCC	2 cut(s)	852, 863
BspPI	GGATC	5 cut(s)	141, 338, 856, 869, 926
BspT107I	GGYRCC	1 cut(s)	850
BspTI	CTTAAG	2 cut(s)	61, 358
BspTNI	GGTCTC	1 cut(s)	534
BsrDI	GCAATG	1 cut(s)	829
BsrI	ACTGG	1 cut(s)	354
BssECI	CCNNGG	1 cut(s)	129
Bst2UI	CCWGG	2 cut(s)	131, 999
Bst4CI	ACNGT	1 cut(s)	961
BstAFI	CTTAAG	2 cut(s)	61, 358
BstC8I	GCNNGC	1 cut(s)	701
BstDEI	CTNAG	4 cut(s)	68, 121, 737, 881
BstF5I	GGATG	2 cut(s)	10, 284
BstFNI	CGCG	1 cut(s)	216
BstMAI	GTCTC	3 cut(s)	534, 727, 812
BstMWI	GCNNNNNNNGC	3 cut(s)	187, 419, 553
BstNI	CCWGG	2 cut(s)	131, 999
BstSCI	CCNGG	2 cut(s)	129, 997
BstUI	CGCG	1 cut(s)	216
BstV1I	GCAGC	5 cut(s)	177, 354, 376, 693, 715
BstX2I	RGATCY	3 cut(s)	133, 861, 886
BstXI	CCANNNNNNTGG	2 cut(s)	664, 954
BstYI	RGATCY	3 cut(s)	133, 861, 886
Bsu15I	ATCGAT	2 cut(s)	489, 930
Bsu36I	CCTNAGG	1 cut(s)	68
BsuRI	GGCC	5 cut(s)	206, 381, 945, 1002, 1014
BsuTUI	ATCGAT	2 cut(s)	489, 930
BtsCI	GGATG	2 cut(s)	10, 284
BtsIMutI	CAGTG	1 cut(s)	614
BtuMI	TCGCGA	1 cut(s)	216
Cac8I	GCNNGC	1 cut(s)	701
Cfr13I	GGNCC	3 cut(s)	379, 944, 1001
ClaI	ATCGAT	2 cut(s)	489, 930
Csp6I	GTAC	3 cut(s)	304, 535, 749
CviAII	CATG	5 cut(s)	226, 266, 308, 323, 904
CviQI	GTAC	3 cut(s)	304, 535, 749
DdeI	CTNAG	4 cut(s)	68, 121, 737, 881
DriI	GACNNNNNGTC	1 cut(s)	1051
EaeI	YGGCCR	1 cut(s)	1012
Eam1105I	GACNNNNNGTC	1 cut(s)	1051
Ecl136II	GAGCTC	1 cut(s)	745
Eco24I	GRGCYC	2 cut(s)	415, 747
Eco31I	GGTCTC	1 cut(s)	534
Eco53kI	GAGCTC	1 cut(s)	745
Eco57I	CTGAAG	1 cut(s)	863
Eco81I	CCTNAGG	1 cut(s)	68
Eco88I	CYCGRG	1 cut(s)	1003
EcoICRI	GAGCTC	1 cut(s)	745
EcoRII	CCWGG	2 cut(s)	129, 997
EcoT22I	ATGCAT	1 cut(s)	267
EcoT38I	GRGCYC	2 cut(s)	415, 747
Esp3I	CGTCTC	1 cut(s)	812
FaeI	CATG	5 cut(s)	229, 269, 311, 326, 907
FaqI	GGGAC	1 cut(s)	780
FatI	CATG	5 cut(s)	225, 265, 307, 322, 903
FauI	CCCGC	1 cut(s)	692
FbaI	TGATCA	1 cut(s)	780
Fnu4HI	GCNGC	6 cut(s)	191, 194, 365, 368, 704, 707
FokI	GGATG	2 cut(s)	17, 291
FriOI	GRGCYC	2 cut(s)	415, 747
Fsp4HI	GCNGC	6 cut(s)	191, 194, 365, 368, 704, 707
FspBI	CTAG	1 cut(s)	455
GluI	GCNGC	6 cut(s)	191, 194, 365, 368, 704, 707
HaeIII	GGCC	5 cut(s)	206, 381, 945, 1002, 1014
Hin1II	CATG	5 cut(s)	229, 269, 311, 326, 907
HindIII	AAGCTT	2 cut(s)	179, 288
HinfI	GANTC	4 cut(s)	143, 319, 604, 626
HphI	GGTGA	1 cut(s)	94
Hpy188I	TCNGA	6 cut(s)	27, 663, 732, 757, 875, 882
Hpy188III	TCNNGA	4 cut(s)	52, 215, 455, 1043
Hpy99I	CGWCG	1 cut(s)	221
HpyAV	CCTTC	6 cut(s)	263, 402, 535, 653, 838, 904
HpyCH4III	ACNGT	1 cut(s)	961
HpyCH4IV	ACGT	1 cut(s)	397
HpyCH4V	TGCA	7 cut(s)	115, 237, 265, 295, 467, 709, 920
HpyF10VI	GCNNNNNNNGC	3 cut(s)	187, 419, 553
HpyF3I	CTNAG	4 cut(s)	68, 121, 737, 881
HpySE526I	ACGT	1 cut(s)	397
Hsp92II	CATG	5 cut(s)	229, 269, 311, 326, 907
Ksp22I	TGATCA	1 cut(s)	780
LmnI	GCTCC	3 cut(s)	13, 667, 742
LpnPI	CCDG	8 cut(s)	80, 116, 143, 335, 843, 878, 984, 1011
Lsp1109I	GCAGC	5 cut(s)	177, 354, 376, 693, 715
LweI	GCATC	4 cut(s)	205, 252, 269, 877
MaeI	CTAG	1 cut(s)	455
MaeII	ACGT	1 cut(s)	397
MboII	GAAGA	4 cut(s)	271, 413, 488, 572
MflI	RGATCY	3 cut(s)	133, 861, 886
MhlI	GDGCHC	2 cut(s)	415, 747
MlsI	TGGCCA	1 cut(s)	1014
MluCI	AATT	4 cut(s)	389, 596, 772, 1008
MluNI	TGGCCA	1 cut(s)	1014
MlyI	GAGTC	1 cut(s)	152
MmeI	TCCRAC	2 cut(s)	548, 898
Mox20I	TGGCCA	1 cut(s)	1014
Mph1103I	ATGCAT	1 cut(s)	267
MscI	TGGCCA	1 cut(s)	1014
MseI	TTAA	5 cut(s)	62, 186, 359, 963, 1035
Msp20I	TGGCCA	1 cut(s)	1014
MspA1I	CMGCKG	2 cut(s)	367, 706
MspCI	CTTAAG	2 cut(s)	61, 358
MspR9I	CCNGG	2 cut(s)	131, 999
Mva1269I	GAATGC	1 cut(s)	1069
MvaI	CCWGG	2 cut(s)	131, 999
MvnI	CGCG	1 cut(s)	216
MwoI	GCNNNNNNNGC	3 cut(s)	187, 419, 553
NlaIII	CATG	5 cut(s)	229, 269, 311, 326, 907
NlaIV	GGNNCC	2 cut(s)	852, 863
NruI	TCGCGA	1 cut(s)	216
NsiI	ATGCAT	1 cut(s)	267
PcsI	WCGNNNNNNNCGW	1 cut(s)	979
PctI	GAATGC	1 cut(s)	1069
PfeI	GAWTC	3 cut(s)	319, 604, 626
PflMI	CCANNNNNTGG	1 cut(s)	941
PkrI	GCNGC	6 cut(s)	192, 195, 366, 369, 705, 708
PleI	GAGTC	1 cut(s)	151
PpsI	GAGTC	1 cut(s)	151
Psp124BI	GAGCTC	1 cut(s)	747
Psp6I	CCWGG	2 cut(s)	129, 997
PspGI	CCWGG	2 cut(s)	129, 997
PspN4I	GGNNCC	2 cut(s)	852, 863
PspPI	GGNCC	3 cut(s)	379, 944, 1001
PsuI	RGATCY	3 cut(s)	133, 861, 886
PvuII	CAGCTG	2 cut(s)	367, 706
RruI	TCGCGA	1 cut(s)	216
RsaI	GTAC	3 cut(s)	305, 536, 750
RsaNI	GTAC	3 cut(s)	304, 535, 749
SacI	GAGCTC	1 cut(s)	747
SaqAI	TTAA	5 cut(s)	62, 186, 359, 963, 1035
SatI	GCNGC	6 cut(s)	191, 194, 365, 368, 704, 707
Sau96I	GGNCC	3 cut(s)	379, 944, 1001
SchI	GAGTC	1 cut(s)	152
ScrFI	CCNGG	2 cut(s)	131, 999
SduI	GDGCHC	2 cut(s)	415, 747
SfaNI	GCATC	4 cut(s)	205, 252, 269, 877
SmlI	CTYRAG	2 cut(s)	61, 358
SmoI	CTYRAG	2 cut(s)	61, 358
Sse9I	AATT	4 cut(s)	389, 596, 772, 1008
SsiI	CCGC	3 cut(s)	193, 370, 699
SspMI	CTAG	1 cut(s)	455
SstI	GAGCTC	1 cut(s)	747
StyD4I	CCNGG	2 cut(s)	129, 997
TaaI	ACNGT	1 cut(s)	961
TaiI	ACGT	1 cut(s)	400
TaqI	TCGA	3 cut(s)	489, 930, 1044
TaqII	GACCGA	1 cut(s)	516
TasI	AATT	4 cut(s)	389, 596, 772, 1008
TatI	WGTACW	1 cut(s)	534
TauI	GCSGC	1 cut(s)	196
TfiI	GAWTC	3 cut(s)	319, 604, 626
Tru1I	TTAA	5 cut(s)	62, 186, 359, 963, 1035
Tru9I	TTAA	5 cut(s)	62, 186, 359, 963, 1035
TscAI	CASTG	1 cut(s)	614
TseI	GCWGC	5 cut(s)	190, 364, 367, 703, 706
TspDTI	ATGAA	4 cut(s)	171, 282, 452, 495
TspRI	CASTG	1 cut(s)	614
Van91I	CCANNNNNTGG	1 cut(s)	941
Vha464I	CTTAAG	2 cut(s)	61, 358
XapI	RAATTY	1 cut(s)	772
XbaI	TCTAGA	1 cut(s)	454
XspI	CTAG	1 cut(s)	455
Zsp2I	ATGCAT	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.