Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0003960

Physical Location & Seq

Genomic Coordinates Forward (+)

24220441 .. 24221397

Gene Structure 957 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g23230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGAAAGAATTGGTTCGGGATATTCAGGAAAGAAGAAAAAGATATGAACTCAGTTCCATTGACCAGCAAGGTCAAGATAATGGCGAAAAGACTCTACCGTGGCATGACCCTCGAGTGGCTTCCCTTTTCATTGGGGAGGCTGAAGTGGTGGGGATTAAGTCCGCCAGAGCAAAGCTAACTAATTTGTTGGTTGGGGGAGCGCCGAGACGCGAAGTGATATCAGTGGTTGGCATGGGAGGACTTGGGAAGACCACTCTTGCCAAAAAAGTTTATGACAATCTGACGGTGCTGGACCAATTTGATTGCTACGCTTGGATTACGGTGTCCCAGACATACAAGGTGGAGGATCTTCTGAGGACAGTAGTCAAAATGTTCTGCAGTTCAAGGAACGAGAATTTCCCAGAGGGAATTGACACAATGAATGAGGAGTCCCTGATCAGAAAATCAAGAGAGTATTTGCAGCAAAAGAGGTATGTTGTTGTGTTTGATGATGTGTGGAAAGTAGATTTTTGGGAGGCTATAGAACATGCTTTACCGGATAATAAAGGCGGACGAATAATGATTACTACAAGGAGTCAAGATGTTGCCCATTTTTGCAAAAAGTCTTGTTTTGTTCATGTTCATCACTTGCAACCTCTGCCTCCAAACAAGGCATGGGAATTGTTTTGTAGAAAGGCATTTCAGTTTGAATTGGAGGGAAAGTGCCCTCCAGAGTTTGAAGATATGTCACGGGAAATCGTTCGAAAGTGCGAAATTGTTCAGATTTACAAAGATGAGTACCTCCGCGAGCCAAATCAAGAAGATCTGAATCAGCTCCTTCGCAAAGCTGAATACCATGGGTTTCCGACCATGATAGGGTCATTAGACTGCATGCATTGGGATTGGAAGCCTCAAGAATATGGGCGAAATTCTATCTTTAGAACATTGCATGCAAGCCTCAATCTTCAAGTTTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009626 GO:0009987 GO:0012501 GO:0016020 GO:0019897 GO:0019898 GO:0023052 GO:0033554 GO:0034050 GO:0036094 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

319

Amino Acids

37.15

Weight (kDa)

6.77

Isoelectric Point (pI)

45.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NB-ARC	PF00931	58 - 230	2.7e-44	NB-ARC domain
Plant_tran	PF04827	259 - 296	1.2e-10	Plant transposon protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003960)

Species	Orthologous Gene IDs
malus_domestica	MD00G1097800.v1.1 MD01G1186500.v1.1 MD01G1186600.v1.1 MD01G1186800.v1.1 MD01G1187000.v1.1 MD01G1187100.v1.1 MD07G1258600.v1.1 MD07G1258700.v1.1 MD07G1258800.v1.1 MD07G1258900.v1.1 MD07G1259200.v1.1 MD07G1259300.v1.1
prunus_persica	Prupe.2G283200_v2.0.a1 Prupe.2G283300_v2.0.a1 Prupe.2G283400_v2.0.a1
pyrus_communis	pycom01g19810 pycom01g19820 pycom01g19840 pycom01g19900 pycom07g23170 pycom07g23230 pycom07g23240 pycom07g23250 pycom07g23260
rosa_chinensis	RchiOBHm_Chr1g0375241
rosa_laevigata	RLG00000026676
rosa_multiflora	Rmu_co8330553.1_g000001 Rmu_sc0000554.1_g000032
rosa_roxburghii	Rroxscaffold_4G00282910
rosa_rugosa	Rorug01G0389400
rosa_samantha	Rh1AG400100 Rh1BG364400 Rh1DG395000
rosa_wichuraiana	Rw1G035520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	210, 786
AciI	CCGC	3 cut(s)	162, 549, 784
AclWI	GGATC	1 cut(s)	354
AcsI	RAATTY	2 cut(s)	394, 907
AcuI	CTGAAG	1 cut(s)	162
AfaI	GTAC	1 cut(s)	779
AfiI	CCNNNNNNNGG	2 cut(s)	115, 855
AgsI	TTSAA	4 cut(s)	384, 689, 719, 947
AluBI	AGCT	3 cut(s)	175, 814, 827
AluI	AGCT	3 cut(s)	175, 814, 827
Alw26I	GTCTC	1 cut(s)	199
AlwI	GGATC	1 cut(s)	354
Ama87I	CYCGRG	1 cut(s)	111
ApeKI	GCWGC	1 cut(s)	460
ApoI	RAATTY	2 cut(s)	394, 907
Asp700I	GAANNNNTTC	3 cut(s)	12, 738, 756
AspLEI	GCGC	1 cut(s)	202
AspS9I	GGNCC	1 cut(s)	292
AsuII	TTCGAA	1 cut(s)	742
AvaI	CYCGRG	1 cut(s)	111
AvaII	GGWCC	1 cut(s)	292
BaeGI	GKGCMC	1 cut(s)	707
BbsI	GAAGAC	1 cut(s)	254
BbvI	GCAGC	1 cut(s)	472
BcgI	CGANNNNNNTGC	2 cut(s)	92, 126
BclI	TGATCA	1 cut(s)	435
BcoDI	GTCTC	1 cut(s)	199
BfmI	CTRYAG	2 cut(s)	376, 519
BfoI	RGCGCY	1 cut(s)	203
BglII	AGATCT	1 cut(s)	802
BisI	GCNGC	1 cut(s)	461
BlsI	GCNGC	1 cut(s)	462
Bme18I	GGWCC	1 cut(s)	292
BmeT110I	CYCGRG	1 cut(s)	111
BmgT120I	GGNCC	1 cut(s)	292
BoxI	GACNNNNGTC	1 cut(s)	362
BpiI	GAAGAC	1 cut(s)	254
BpmI	CTGGAG	1 cut(s)	693
Bpu14I	TTCGAA	1 cut(s)	742
BpuEI	CTTGAG	1 cut(s)	876
BsaBI	GATNNNNATC	1 cut(s)	807
BsaJI	CCNNGG	2 cut(s)	98, 835
BsaWI	WCCGGW	1 cut(s)	535
BsaXI	ACNNNNNCTCC	2 cut(s)	686, 716
Bsc4I	CCNNNNNNNGG	2 cut(s)	115, 855
Bse3DI	GCAATG	1 cut(s)	923
Bse8I	GATNNNNATC	1 cut(s)	807
BseDI	CCNNGG	2 cut(s)	98, 835
BseJI	GATNNNNATC	1 cut(s)	807
BseLI	CCNNNNNNNGG	2 cut(s)	115, 855
BseMI	GCAATG	1 cut(s)	923
BseMII	CTCAG	2 cut(s)	64, 344
BseRI	GAGGAG	1 cut(s)	440
BseSI	GKGCMC	1 cut(s)	707
BseXI	GCAGC	1 cut(s)	472
Bsh1236I	CGCG	2 cut(s)	210, 786
BsiHKCI	CYCGRG	1 cut(s)	111
BsiSI	CCGG	1 cut(s)	536
BslFI	GGGAC	2 cut(s)	310, 415
BslI	CCNNNNNNNGG	2 cut(s)	115, 855
BsmAI	GTCTC	1 cut(s)	199
BsmBI	CGTCTC	1 cut(s)	199
BsmFI	GGGAC	2 cut(s)	310, 415
BsoBI	CYCGRG	1 cut(s)	111
Bsp119I	TTCGAA	1 cut(s)	742
Bsp1286I	GDGCHC	1 cut(s)	707
Bsp143I	GATC	3 cut(s)	346, 435, 802
Bsp19I	CCATGG	1 cut(s)	835
BspACI	CCGC	3 cut(s)	162, 549, 784
BspCNI	CTCAG	2 cut(s)	63, 345
BspFNI	CGCG	2 cut(s)	210, 786
BspMAI	CTGCAG	1 cut(s)	380
BspPI	GGATC	1 cut(s)	354
BspT104I	TTCGAA	1 cut(s)	742
BsrDI	GCAATG	1 cut(s)	923
BssECI	CCNNGG	2 cut(s)	98, 835
BssMI	GATC	3 cut(s)	346, 435, 802
BssT1I	CCWWGG	1 cut(s)	835
Bst4CI	ACNGT	4 cut(s)	99, 286, 322, 361
BstAPI	GCANNNNNTGC	1 cut(s)	637
BstBI	TTCGAA	1 cut(s)	742
BstC8I	GCNNGC	4 cut(s)	788, 872, 930, 934
BstDEI	CTNAG	2 cut(s)	50, 353
BstDSI	CCRYGG	2 cut(s)	98, 835
BstFNI	CGCG	2 cut(s)	210, 786
BstH2I	RGCGCY	1 cut(s)	203
BstHHI	GCGC	1 cut(s)	202
BstKTI	GATC	3 cut(s)	349, 438, 805
BstMAI	GTCTC	1 cut(s)	199
BstMBI	GATC	3 cut(s)	346, 435, 802
BstMWI	GCNNNNNNNGC	1 cut(s)	637
BstNSI	RCATGY	3 cut(s)	530, 874, 932
BstPAI	GACNNNNGTC	1 cut(s)	362
BstSFI	CTRYAG	2 cut(s)	376, 519
BstSLI	GKGCMC	1 cut(s)	707
BstUI	CGCG	2 cut(s)	210, 786
BstV1I	GCAGC	1 cut(s)	472
BstV2I	GAAGAC	1 cut(s)	254
BstX2I	RGATCY	2 cut(s)	346, 802
BstYI	RGATCY	2 cut(s)	346, 802
BtgI	CCRYGG	2 cut(s)	98, 835
BtsIMutI	CAGTG	1 cut(s)	228
Cac8I	GCNNGC	4 cut(s)	788, 872, 930, 934
CfoI	GCGC	1 cut(s)	202
Cfr13I	GGNCC	1 cut(s)	292
CseI	GACGC	1 cut(s)	216
Csp6I	GTAC	1 cut(s)	778
CviAII	CATG	9 cut(s)	104, 232, 527, 617, 654, 836, 850, 871, 929
CviJI	RGCY	9 cut(s)	119, 140, 175, 518, 790, 814, 827, 889, 936
CviKI_1	RGCY	9 cut(s)	119, 140, 175, 518, 790, 814, 827, 889, 936
CviQI	GTAC	1 cut(s)	778
DdeI	CTNAG	2 cut(s)	50, 353
DpnI	GATC	3 cut(s)	348, 437, 804
DpnII	GATC	3 cut(s)	346, 435, 802
EciI	GGCGGA	2 cut(s)	151, 564
Eco130I	CCWWGG	1 cut(s)	835
Eco32I	GATATC	1 cut(s)	219
Eco47I	GGWCC	1 cut(s)	292
Eco57I	CTGAAG	1 cut(s)	162
Eco88I	CYCGRG	1 cut(s)	111
EcoRV	GATATC	1 cut(s)	219
EcoT14I	CCWWGG	1 cut(s)	835
EcoT22I	ATGCAT	1 cut(s)	876
ErhI	CCWWGG	1 cut(s)	835
Esp3I	CGTCTC	1 cut(s)	199
FaeI	CATG	9 cut(s)	107, 235, 530, 620, 657, 839, 853, 874, 932
FaqI	GGGAC	2 cut(s)	310, 415
FatI	CATG	9 cut(s)	103, 231, 526, 616, 653, 835, 849, 870, 928
FbaI	TGATCA	1 cut(s)	435
Fnu4HI	GCNGC	1 cut(s)	461
Fsp4HI	GCNGC	1 cut(s)	461
GlaI	GCGC	1 cut(s)	201
GluI	GCNGC	1 cut(s)	461
GsuI	CTGGAG	1 cut(s)	693
HaeII	RGCGCY	1 cut(s)	203
HapII	CCGG	1 cut(s)	536
HgaI	GACGC	1 cut(s)	216
HhaI	GCGC	1 cut(s)	202
Hin1II	CATG	9 cut(s)	107, 235, 530, 620, 657, 839, 853, 874, 932
Hin6I	GCGC	1 cut(s)	200
HinP1I	GCGC	1 cut(s)	200
HinfI	GANTC	4 cut(s)	91, 428, 574, 808
HpaII	CCGG	1 cut(s)	536
Hpy166II	GTNNAC	1 cut(s)	952
Hpy188I	TCNGA	6 cut(s)	282, 354, 440, 762, 807, 846
Hpy188III	TCNNGA	8 cut(s)	17, 26, 74, 447, 578, 710, 797, 893
Hpy8I	GTNNAC	1 cut(s)	952
HpyAV	CCTTC	1 cut(s)	827
HpyCH4III	ACNGT	4 cut(s)	99, 286, 322, 361
HpyCH4V	TGCA	8 cut(s)	378, 460, 597, 631, 870, 874, 928, 932
HpyF10VI	GCNNNNNNNGC	1 cut(s)	637
HpyF3I	CTNAG	2 cut(s)	50, 353
Hsp92II	CATG	9 cut(s)	107, 235, 530, 620, 657, 839, 853, 874, 932
HspAI	GCGC	1 cut(s)	200
Ksp22I	TGATCA	1 cut(s)	435
Kzo9I	GATC	3 cut(s)	346, 435, 802
LmnI	GCTCC	2 cut(s)	197, 819
LpnPI	CCDG	9 cut(s)	11, 77, 178, 275, 341, 414, 446, 549, 723
Lsp1109I	GCAGC	1 cut(s)	472
MaeIII	GTNAC	1 cut(s)	726
MalI	GATC	3 cut(s)	348, 437, 804
MboI	GATC	3 cut(s)	346, 435, 802
MboII	GAAGA	6 cut(s)	45, 259, 341, 731, 812, 935
MflI	RGATCY	2 cut(s)	346, 802
MhlI	GDGCHC	1 cut(s)	707
MluCI	AATT	9 cut(s)	8, 181, 296, 394, 408, 659, 689, 753, 907
MlyI	GAGTC	3 cut(s)	85, 437, 583
MmeI	TCCRAC	1 cut(s)	869
Mph1103I	ATGCAT	1 cut(s)	876
MroXI	GAANNNNTTC	3 cut(s)	12, 738, 756
MseI	TTAA	1 cut(s)	156
MspI	CCGG	1 cut(s)	536
MvnI	CGCG	2 cut(s)	210, 786
MwoI	GCNNNNNNNGC	1 cut(s)	637
NcoI	CCATGG	1 cut(s)	835
NdeII	GATC	3 cut(s)	346, 435, 802
NlaIII	CATG	9 cut(s)	107, 235, 530, 620, 657, 839, 853, 874, 932
NmeAIII	GCCGAG	1 cut(s)	228
NmuCI	GTSAC	1 cut(s)	726
NsiI	ATGCAT	1 cut(s)	876
NspI	RCATGY	3 cut(s)	530, 874, 932
NspV	TTCGAA	1 cut(s)	742
PaeI	GCATGC	2 cut(s)	874, 932
PaeR7I	CTCGAG	1 cut(s)	111
PdmI	GAANNNNTTC	3 cut(s)	12, 738, 756
PfeI	GAWTC	1 cut(s)	808
PkrI	GCNGC	1 cut(s)	462
PleI	GAGTC	3 cut(s)	85, 436, 582
PpsI	GAGTC	3 cut(s)	85, 436, 582
PshAI	GACNNNNGTC	1 cut(s)	362
PspPI	GGNCC	1 cut(s)	292
PspXI	VCTCGAGB	1 cut(s)	111
PsrI	GAACNNNNNNTAC	2 cut(s)	516, 548
PstI	CTGCAG	1 cut(s)	380
PsuI	RGATCY	2 cut(s)	346, 802
RsaI	GTAC	1 cut(s)	779
RsaNI	GTAC	1 cut(s)	778
SaqAI	TTAA	1 cut(s)	156
SatI	GCNGC	1 cut(s)	461
Sau3AI	GATC	3 cut(s)	346, 435, 802
Sau96I	GGNCC	1 cut(s)	292
SchI	GAGTC	3 cut(s)	85, 437, 583
SduI	GDGCHC	1 cut(s)	707
SetI	ASST	8 cut(s)	73, 177, 342, 473, 637, 783, 816, 829
SfcI	CTRYAG	2 cut(s)	376, 519
Sfr274I	CTCGAG	1 cut(s)	111
SfuI	TTCGAA	1 cut(s)	742
SinI	GGWCC	1 cut(s)	292
SlaI	CTCGAG	1 cut(s)	111
SmlI	CTYRAG	2 cut(s)	111, 891
SmoI	CTYRAG	2 cut(s)	111, 891
SphI	GCATGC	2 cut(s)	874, 932
Sse9I	AATT	9 cut(s)	8, 181, 296, 394, 408, 659, 689, 753, 907
SsiI	CCGC	3 cut(s)	162, 549, 784
StyI	CCWWGG	1 cut(s)	835
TaaI	ACNGT	4 cut(s)	99, 286, 322, 361
TaqI	TCGA	2 cut(s)	112, 742
TasI	AATT	9 cut(s)	8, 181, 296, 394, 408, 659, 689, 753, 907
TfiI	GAWTC	1 cut(s)	808
Tru1I	TTAA	1 cut(s)	156
Tru9I	TTAA	1 cut(s)	156
TscAI	CASTG	1 cut(s)	228
TseFI	GTSAC	1 cut(s)	726
TseI	GCWGC	1 cut(s)	460
Tsp45I	GTSAC	1 cut(s)	726
TspDTI	ATGAA	6 cut(s)	17, 60, 118, 434, 605, 611
TspRI	CASTG	1 cut(s)	228
VpaK11BI	GGWCC	1 cut(s)	292
XapI	RAATTY	2 cut(s)	394, 907
XceI	RCATGY	3 cut(s)	530, 874, 932
XcmI	CCANNNNNNNNNTGG	1 cut(s)	651
XhoI	CTCGAG	1 cut(s)	111
XmnI	GAANNNNTTC	3 cut(s)	12, 738, 756
Zsp2I	ATGCAT	1 cut(s)	876

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.