Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8330553.1

Orthogroup ID

OG0003960

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 975

Gene Structure 975 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8330553.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

actccaccagaatccattcggtttctctacttgaaggggcgtctagagaagttaccgagttggatttctaagctagagcatctagtcaagttgaggattttctggtcaaggttaagagatgacccactaaaagcccttcaaaatctgcccaacttgttggagcttggactctcatacaaggcatatgacggagtgcagctgcattttgaggaaggaggatttcagaaactgaagttgctaaaactcaagcacttggagggactaaattcactgattattgacaatggggttatgcctcttctccaagagctacaacttgggccttcaccacaactgaaggaggttccctctggaatccaccacttgagagatctaagaactcttagatttgttgacatgcctgaagctttcagacgtggaatggatggccagcattattgggttgttgagcatgttacggat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009626 GO:0009987 GO:0012501 GO:0016020 GO:0019897 GO:0019898 GO:0023052 GO:0033554 GO:0034050 GO:0036094 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

154

Amino Acids

17.92

Weight (kDa)

8.86

Isoelectric Point (pI)

45.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003960)

Species	Orthologous Gene IDs
malus_domestica	MD00G1097800.v1.1 MD01G1186500.v1.1 MD01G1186600.v1.1 MD01G1186800.v1.1 MD01G1187000.v1.1 MD01G1187100.v1.1 MD07G1258600.v1.1 MD07G1258700.v1.1 MD07G1258800.v1.1 MD07G1258900.v1.1 MD07G1259200.v1.1 MD07G1259300.v1.1
prunus_persica	Prupe.2G283200_v2.0.a1 Prupe.2G283300_v2.0.a1 Prupe.2G283400_v2.0.a1
pyrus_communis	pycom01g19810 pycom01g19820 pycom01g19840 pycom01g19900 pycom07g23170 pycom07g23230 pycom07g23240 pycom07g23250 pycom07g23260
rosa_chinensis	RchiOBHm_Chr1g0375241
rosa_laevigata	RLG00000026676
rosa_multiflora	Rmu_co8330553.1_g000001 Rmu_sc0000554.1_g000032
rosa_roxburghii	Rroxscaffold_4G00282910
rosa_rugosa	Rorug01G0389400
rosa_samantha	Rh1AG400100 Rh1BG364400 Rh1DG395000
rosa_wichuraiana	Rw1G035520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	427
AcsI	RAATTY	1 cut(s)	265
AcuI	CTGAAG	3 cut(s)	251, 356, 423
AcyI	GRCGYC	1 cut(s)	40
AgsI	TTSAA	2 cut(s)	34, 140
AjiI	CACGTC	1 cut(s)	416
AluBI	AGCT	5 cut(s)	73, 163, 199, 310, 407
AluI	AGCT	5 cut(s)	73, 163, 199, 310, 407
AlwNI	CAGNNNCTG	1 cut(s)	229
AoxI	GGCC	2 cut(s)	320, 427
ApeKI	GCWGC	2 cut(s)	196, 199
ApoI	RAATTY	1 cut(s)	265
Asp700I	GAANNNNTTC	1 cut(s)	15
AspS9I	GGNCC	1 cut(s)	320
AsuHPI	GGTGA	1 cut(s)	318
BalI	TGGCCA	1 cut(s)	429
BbvI	GCAGC	2 cut(s)	186, 208
BccI	CCATC	1 cut(s)	419
BfaI	CTAG	3 cut(s)	44, 74, 83
BglII	AGATCT	1 cut(s)	370
BisI	GCNGC	2 cut(s)	197, 200
BlsI	GCNGC	2 cut(s)	198, 201
BmgBI	CACGTC	1 cut(s)	416
BmgT120I	GGNCC	1 cut(s)	320
BmiI	GGNNCC	1 cut(s)	345
BmsI	GCATC	1 cut(s)	88
BplI	GAGNNNNNCTC	2 cut(s)	332, 364
BpuEI	CTTGAG	2 cut(s)	230, 385
BsaHI	GRCGYC	1 cut(s)	40
BseGI	GGATG	1 cut(s)	430
BseXI	GCAGC	2 cut(s)	186, 208
BsgI	GTGCAG	1 cut(s)	215
BshFI	GGCC	2 cut(s)	322, 429
BslFI	GGGAC	1 cut(s)	273
BsmFI	GGGAC	1 cut(s)	273
BsnI	GGCC	2 cut(s)	322, 429
Bsp143I	GATC	1 cut(s)	370
BspANI	GGCC	2 cut(s)	322, 429
BspLI	GGNNCC	1 cut(s)	345
BssMI	GATC	1 cut(s)	370
BssNI	GRCGYC	1 cut(s)	40
Bst6I	CTCTTC	1 cut(s)	303
BstACI	GRCGYC	1 cut(s)	40
BstC8I	GCNNGC	1 cut(s)	431
BstDEI	CTNAG	3 cut(s)	69, 374, 383
BstF5I	GGATG	1 cut(s)	430
BstKTI	GATC	1 cut(s)	373
BstMBI	GATC	1 cut(s)	370
BstNSI	RCATGY	2 cut(s)	400, 455
BstV1I	GCAGC	2 cut(s)	186, 208
BstX2I	RGATCY	1 cut(s)	370
BstXI	CCANNNNNNTGG	1 cut(s)	157
BstYI	RGATCY	1 cut(s)	370
BsuRI	GGCC	2 cut(s)	322, 429
BtrI	CACGTC	1 cut(s)	416
BtsCI	GGATG	1 cut(s)	430
BtsIMutI	CAGTG	1 cut(s)	269
Cac8I	GCNNGC	1 cut(s)	431
CaiI	CAGNNNCTG	1 cut(s)	229
Cfr13I	GGNCC	1 cut(s)	320
CseI	GACGC	1 cut(s)	29
CviAII	CATG	2 cut(s)	397, 452
CviJI	RGCY	8 cut(s)	73, 134, 163, 199, 310, 322, 407, 429
CviKI_1	RGCY	8 cut(s)	73, 134, 163, 199, 310, 322, 407, 429
DdeI	CTNAG	3 cut(s)	69, 374, 383
DpnI	GATC	1 cut(s)	372
DpnII	GATC	1 cut(s)	370
EaeI	YGGCCR	1 cut(s)	427
Eam1104I	CTCTTC	1 cut(s)	303
EarI	CTCTTC	1 cut(s)	303
Eco57I	CTGAAG	3 cut(s)	251, 356, 423
FaeI	CATG	2 cut(s)	400, 455
FaiI	YATR	6 cut(s)	175, 184, 186, 293, 398, 453
FaqI	GGGAC	1 cut(s)	273
FatI	CATG	2 cut(s)	396, 451
FauNDI	CATATG	1 cut(s)	184
Fnu4HI	GCNGC	2 cut(s)	197, 200
FokI	GGATG	1 cut(s)	437
Fsp4HI	GCNGC	2 cut(s)	197, 200
FspBI	CTAG	3 cut(s)	44, 74, 83
GluI	GCNGC	2 cut(s)	197, 200
HaeIII	GGCC	2 cut(s)	322, 429
HgaI	GACGC	1 cut(s)	29
Hin1I	GRCGYC	1 cut(s)	40
Hin1II	CATG	2 cut(s)	400, 455
HincII	GTYRAC	1 cut(s)	394
HindII	GTYRAC	1 cut(s)	394
HindIII	AAGCTT	1 cut(s)	405
HinfI	GANTC	3 cut(s)	11, 168, 354
HphI	GGTGA	1 cut(s)	318
Hpy166II	GTNNAC	1 cut(s)	394
Hpy188I	TCNGA	2 cut(s)	225, 413
Hpy188III	TCNNGA	2 cut(s)	44, 351
Hpy8I	GTNNAC	1 cut(s)	394
HpyAV	CCTTC	5 cut(s)	28, 146, 206, 331, 333
HpyCH4IV	ACGT	1 cut(s)	415
HpyCH4V	TGCA	2 cut(s)	196, 202
HpyF3I	CTNAG	3 cut(s)	69, 374, 383
HpySE526I	ACGT	1 cut(s)	415
Hsp92I	GRCGYC	1 cut(s)	40
Hsp92II	CATG	2 cut(s)	400, 455
Kzo9I	GATC	1 cut(s)	370
LmnI	GCTCC	1 cut(s)	160
LpnPI	CCDG	5 cut(s)	21, 88, 336, 414, 443
Lsp1109I	GCAGC	2 cut(s)	186, 208
LweI	GCATC	1 cut(s)	88
MaeI	CTAG	3 cut(s)	44, 74, 83
MaeII	ACGT	1 cut(s)	415
MaeIII	GTNAC	2 cut(s)	51, 454
MalI	GATC	1 cut(s)	372
MboI	GATC	1 cut(s)	370
MboII	GAAGA	1 cut(s)	290
MflI	RGATCY	1 cut(s)	370
MlsI	TGGCCA	1 cut(s)	429
MluCI	AATT	1 cut(s)	265
MluNI	TGGCCA	1 cut(s)	429
MlyI	GAGTC	1 cut(s)	162
MmeI	TCCRAC	2 cut(s)	41, 138
MnlI	CCTC	7 cut(s)	87, 202, 209, 250, 306, 334, 358
Mox20I	TGGCCA	1 cut(s)	429
MroXI	GAANNNNTTC	1 cut(s)	15
MscI	TGGCCA	1 cut(s)	429
MseI	TTAA	1 cut(s)	113
Msp20I	TGGCCA	1 cut(s)	429
MspA1I	CMGCKG	1 cut(s)	199
NdeI	CATATG	1 cut(s)	184
NdeII	GATC	1 cut(s)	370
NlaIII	CATG	2 cut(s)	400, 455
NlaIV	GGNNCC	1 cut(s)	345
NspI	RCATGY	2 cut(s)	400, 455
PdmI	GAANNNNTTC	1 cut(s)	15
PfeI	GAWTC	2 cut(s)	11, 354
PkrI	GCNGC	2 cut(s)	198, 201
PleI	GAGTC	1 cut(s)	162
PpsI	GAGTC	1 cut(s)	162
PspN4I	GGNNCC	1 cut(s)	345
PspPI	GGNCC	1 cut(s)	320
PstNI	CAGNNNCTG	1 cut(s)	229
PsuI	RGATCY	1 cut(s)	370
PvuII	CAGCTG	1 cut(s)	199
SaqAI	TTAA	1 cut(s)	113
SatI	GCNGC	2 cut(s)	197, 200
Sau3AI	GATC	1 cut(s)	370
Sau96I	GGNCC	1 cut(s)	320
SchI	GAGTC	1 cut(s)	162
SetI	ASST	8 cut(s)	75, 113, 165, 201, 312, 345, 409, 418
SfaNI	GCATC	1 cut(s)	88
SmlI	CTYRAG	2 cut(s)	245, 364
SmoI	CTYRAG	2 cut(s)	245, 364
Sse9I	AATT	1 cut(s)	265
SspMI	CTAG	3 cut(s)	44, 74, 83
TaiI	ACGT	1 cut(s)	418
TasI	AATT	1 cut(s)	265
TfiI	GAWTC	2 cut(s)	11, 354
Tru1I	TTAA	1 cut(s)	113
Tru9I	TTAA	1 cut(s)	113
TscAI	CASTG	1 cut(s)	276
TseI	GCWGC	2 cut(s)	196, 199
TspGWI	ACGGA	1 cut(s)	204
TspRI	CASTG	1 cut(s)	276
XapI	RAATTY	1 cut(s)	265
XbaI	TCTAGA	1 cut(s)	43
XceI	RCATGY	2 cut(s)	400, 455
XmnI	GAANNNNTTC	1 cut(s)	15
XspI	CTAG	3 cut(s)	44, 74, 83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.