Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0002012

Physical Location & Seq

Genomic Coordinates Forward (+)

7157035 .. 7158355

Gene Structure 1321 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1090300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGGTCGGCCACAACACAGCCATATCACTTGCCAAACGTTCAAGGATGTTGCATACTCTAGATCTATCATGGTGCCGGAATTTGACAGATGAGGCCCTGGGTTTAATTGTGGACAGCTGCCTATCACTGAGGATACTAAAACTTCTTGGATGCACTCAGATCACAGATACTTTTCTGGATGGACACTCAAATCCAGAGGTGAGAATTATTGGCTTGAAATTTTCTCCGATACTAGAACATCTCAAGGCGCTTAATCCTCACGAAGGCCCACTGCGTTATTCCTCAGTCTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_6

Protein Analysis

98

Amino Acids

10.78

Weight (kDa)

7.75

Isoelectric Point (pI)

38.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002012)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G06040
fragaria_vesca	FvH4_1g08600 FvH4_1g08600 FvH4_1g08610 FvH4_1g08610
malus_domestica	MD02G1090200.v1.1 MD02G1090300.v1.1 MD02G1090400.v1.1 MD15G1216800.v1.1 MD15G1217000.v1.1
prunus_persica	Prupe.7G199500_v2.0.a1 Prupe.7G199600_v2.0.a1 Prupe.7G199800_v2.0.a1 Prupe.7G199800_v2.0.a1
pyrus_communis	pycom02g07210 pycom02g07220 pycom02g07230 pycom15g19230 pycom15g19240
rosa_chinensis	RchiOBHm_Chr2g0093971 RchiOBHm_Chr2g0094821 RchiOBHm_Chr2g0094831 RchiOBHm_Chr5g0043671
rosa_laevigata	RLG00000016524
rosa_multiflora	Rmu_sc0003027.1_g000001 Rmu_sc0006422.1_g000027 Rmu_sc0018486.1_g000002
rosa_roxburghii	Rroxscaffold_1G00075090 Rroxscaffold_2G00146830 Rroxscaffold_2G00146840
rosa_rugosa	Rorug02G0047100 Rorug02G0047100 Rorug02G0054500 Rorug02G0054600 Rorug02G0054700
rosa_samantha	Rh2AG094700 Rh2AG094800 Rh2BG095300 Rh2BG095400 Rh2CG097100 Rh2CG097200 Rh2CG097300 Rh2DG094100 Rh2DG094200 Rh7BG370500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	72
AclI	AACGTT	1 cut(s)	37
AcoI	YGGCCR	1 cut(s)	7
AcsI	RAATTY	2 cut(s)	79, 218
AfiI	CCNNNNNNNGG	1 cut(s)	263
AgsI	TTSAA	2 cut(s)	42, 217
AjnI	CCWGG	1 cut(s)	96
AluBI	AGCT	1 cut(s)	117
AluI	AGCT	1 cut(s)	117
AoxI	GGCC	3 cut(s)	7, 93, 265
ApeKI	GCWGC	1 cut(s)	117
ApoI	RAATTY	2 cut(s)	79, 218
AspLEI	GCGC	1 cut(s)	250
AspS9I	GGNCC	2 cut(s)	94, 266
AsuHPI	GGTGA	1 cut(s)	211
BanI	GGYRCC	1 cut(s)	72
BbvI	GCAGC	1 cut(s)	104
BccI	CCATC	1 cut(s)	173
BciT130I	CCWGG	1 cut(s)	98
BciVI	GTATCC	1 cut(s)	126
BfaI	CTAG	2 cut(s)	59, 233
BfoI	RGCGCY	1 cut(s)	251
BfuI	GTATCC	1 cut(s)	126
BglII	AGATCT	1 cut(s)	61
BisI	GCNGC	1 cut(s)	118
BlsI	GCNGC	1 cut(s)	119
Bme1390I	CCNGG	1 cut(s)	98
BmgT120I	GGNCC	2 cut(s)	94, 266
BmiI	GGNNCC	1 cut(s)	74
BmrFI	CCNGG	1 cut(s)	98
BmsI	GCATC	1 cut(s)	140
BpuEI	CTTGAG	1 cut(s)	227
BsaJI	CCNNGG	2 cut(s)	96, 97
Bsc4I	CCNNNNNNNGG	1 cut(s)	263
BseBI	CCWGG	1 cut(s)	98
BseDI	CCNNGG	2 cut(s)	96, 97
BseGI	GGATG	3 cut(s)	51, 155, 184
BseLI	CCNNNNNNNGG	1 cut(s)	263
BseMII	CTCAG	2 cut(s)	119, 170
BseXI	GCAGC	1 cut(s)	104
BshFI	GGCC	3 cut(s)	9, 95, 267
BshNI	GGYRCC	1 cut(s)	72
BsiSI	CCGG	1 cut(s)	76
BslI	CCNNNNNNNGG	1 cut(s)	263
BsnI	GGCC	3 cut(s)	9, 95, 267
Bsp143I	GATC	2 cut(s)	61, 159
BspANI	GGCC	3 cut(s)	9, 95, 267
BspCNI	CTCAG	2 cut(s)	120, 169
BspLI	GGNNCC	1 cut(s)	74
BspT107I	GGYRCC	1 cut(s)	72
BssECI	CCNNGG	2 cut(s)	96, 97
BssMI	GATC	2 cut(s)	61, 159
Bst2UI	CCWGG	1 cut(s)	98
BstDEI	CTNAG	3 cut(s)	128, 156, 283
BstENI	CCTNNNNNAGG	1 cut(s)	261
BstF5I	GGATG	3 cut(s)	51, 155, 184
BstH2I	RGCGCY	1 cut(s)	251
BstHHI	GCGC	1 cut(s)	250
BstKTI	GATC	2 cut(s)	64, 162
BstMBI	GATC	2 cut(s)	61, 159
BstNI	CCWGG	1 cut(s)	98
BstSCI	CCNGG	1 cut(s)	96
BstV1I	GCAGC	1 cut(s)	104
BstX2I	RGATCY	1 cut(s)	61
BstYI	RGATCY	1 cut(s)	61
BsuI	GTATCC	1 cut(s)	126
BsuRI	GGCC	3 cut(s)	9, 95, 267
BtsCI	GGATG	3 cut(s)	51, 155, 184
BtsI	GCAGTG	1 cut(s)	269
BtsIMutI	CAGTG	2 cut(s)	125, 269
CfoI	GCGC	1 cut(s)	250
Cfr13I	GGNCC	2 cut(s)	94, 266
CviAII	CATG	1 cut(s)	69
CviJI	RGCY	6 cut(s)	9, 20, 95, 117, 213, 267
CviKI_1	RGCY	6 cut(s)	9, 20, 95, 117, 213, 267
DdeI	CTNAG	3 cut(s)	128, 156, 283
DpnI	GATC	2 cut(s)	63, 161
DpnII	GATC	2 cut(s)	61, 159
EaeI	YGGCCR	1 cut(s)	7
EcoNI	CCTNNNNNAGG	1 cut(s)	261
EcoO109I	RGGNCCY	1 cut(s)	94
EcoRII	CCWGG	1 cut(s)	96
FaeI	CATG	1 cut(s)	72
FaiI	YATR	3 cut(s)	23, 54, 70
FatI	CATG	1 cut(s)	68
Fnu4HI	GCNGC	1 cut(s)	118
FokI	GGATG	3 cut(s)	58, 162, 191
Fsp4HI	GCNGC	1 cut(s)	118
FspBI	CTAG	2 cut(s)	59, 233
GlaI	GCGC	1 cut(s)	249
GluI	GCNGC	1 cut(s)	118
HaeII	RGCGCY	1 cut(s)	251
HaeIII	GGCC	3 cut(s)	9, 95, 267
HapII	CCGG	1 cut(s)	76
HhaI	GCGC	1 cut(s)	250
Hin1II	CATG	1 cut(s)	72
Hin6I	GCGC	1 cut(s)	248
HinP1I	GCGC	1 cut(s)	248
HpaII	CCGG	1 cut(s)	76
HphI	GGTGA	1 cut(s)	211
Hpy166II	GTNNAC	1 cut(s)	112
Hpy188I	TCNGA	2 cut(s)	159, 228
Hpy188III	TCNNGA	4 cut(s)	59, 176, 194, 260
Hpy8I	GTNNAC	1 cut(s)	112
HpyAV	CCTTC	1 cut(s)	257
HpyCH4IV	ACGT	1 cut(s)	37
HpyCH4V	TGCA	2 cut(s)	52, 153
HpyF3I	CTNAG	3 cut(s)	128, 156, 283
HpySE526I	ACGT	1 cut(s)	37
Hsp92II	CATG	1 cut(s)	72
HspAI	GCGC	1 cut(s)	248
Kzo9I	GATC	2 cut(s)	61, 159
LpnPI	CCDG	5 cut(s)	83, 89, 110, 161, 207
Lsp1109I	GCAGC	1 cut(s)	104
LweI	GCATC	1 cut(s)	140
MaeI	CTAG	2 cut(s)	59, 233
MaeII	ACGT	1 cut(s)	37
MalI	GATC	2 cut(s)	63, 161
MboI	GATC	2 cut(s)	61, 159
MflI	RGATCY	1 cut(s)	61
MluCI	AATT	4 cut(s)	79, 105, 204, 218
MnlI	CCTC	5 cut(s)	85, 123, 190, 267, 292
MseI	TTAA	2 cut(s)	104, 252
MspA1I	CMGCKG	1 cut(s)	117
MspI	CCGG	1 cut(s)	76
MspR9I	CCNGG	1 cut(s)	98
MvaI	CCWGG	1 cut(s)	98
NdeII	GATC	2 cut(s)	61, 159
NlaIII	CATG	1 cut(s)	72
NlaIV	GGNNCC	1 cut(s)	74
PasI	CCCWGGG	1 cut(s)	97
PkrI	GCNGC	1 cut(s)	119
Psp1406I	AACGTT	1 cut(s)	37
Psp6I	CCWGG	1 cut(s)	96
PspGI	CCWGG	1 cut(s)	96
PspN4I	GGNNCC	1 cut(s)	74
PspPI	GGNCC	2 cut(s)	94, 266
PsuI	RGATCY	1 cut(s)	61
PvuII	CAGCTG	1 cut(s)	117
SaqAI	TTAA	2 cut(s)	104, 252
SatI	GCNGC	1 cut(s)	118
Sau3AI	GATC	2 cut(s)	61, 159
Sau96I	GGNCC	2 cut(s)	94, 266
ScrFI	CCNGG	1 cut(s)	98
SetI	ASST	3 cut(s)	40, 119, 201
SfaNI	GCATC	1 cut(s)	140
SmlI	CTYRAG	1 cut(s)	242
SmoI	CTYRAG	1 cut(s)	242
Sse9I	AATT	4 cut(s)	79, 105, 204, 218
SspMI	CTAG	2 cut(s)	59, 233
StyD4I	CCNGG	1 cut(s)	96
TaiI	ACGT	1 cut(s)	40
TasI	AATT	4 cut(s)	79, 105, 204, 218
Tru1I	TTAA	2 cut(s)	104, 252
Tru9I	TTAA	2 cut(s)	104, 252
TscAI	CASTG	2 cut(s)	132, 276
TseI	GCWGC	1 cut(s)	117
TspRI	CASTG	2 cut(s)	132, 276
XagI	CCTNNNNNAGG	1 cut(s)	261
XapI	RAATTY	2 cut(s)	79, 218
XbaI	TCTAGA	1 cut(s)	58
XspI	CTAG	2 cut(s)	59, 233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.