Rh7BG370500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0002012
Physical Location & Seq
Reverse (-)
39618824 .. 39621370
2547 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG370500.1

Sequence Viewer

Length: 327 bp
ATGGAAGAGGTGGCTTCACGGCTTCACGCATTTACCCACGTTCAATTTAACAGCCCATTGCGGTTTCCTACAAAAAGCGAGTGGAGGCCGCTGATGAAACAGAAGAGCAATTGGGAAATTGAACAAGGAAACAGACCGGGTAGGTCAACAGCCAATGGTGCAGTAGTGAAAGGCCAAACACCGAAGTTGAAACGAAGATCTCCGGAGGATCAAGGAAGGTCGTACAACATTAGACCACATCTCAAGATCCAGAACTTTAAAGTTGTAGAGCTATCCATGTGGATAATTCAACTATTTTCTCTGAAAGGTGACTTAGAAAGGCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

12.65

Weight (kDa)

10.52

Isoelectric Point (pI)

57.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 202
AciI CCGC 2 cut(s) 61, 89
AclWI GGATC 2 cut(s) 216, 241
AfaI GTAC 1 cut(s) 224
AgsI TTSAA 4 cut(s) 44, 122, 190, 290
AluBI AGCT 1 cut(s) 271
AluI AGCT 1 cut(s) 271
AlwI GGATC 2 cut(s) 216, 241
Aor13HI TCCGGA 1 cut(s) 202
AoxI GGCC 2 cut(s) 86, 172
AsuC2I CCSGG 1 cut(s) 138
AsuHPI GGTGA 1 cut(s) 320
BceAI ACGGC 1 cut(s) 35
BcnI CCSGG 1 cut(s) 138
BglII AGATCT 1 cut(s) 197
BisI GCNGC 1 cut(s) 89
BlsI GCNGC 1 cut(s) 90
Bme1390I CCNGG 1 cut(s) 138
BmrFI CCNGG 1 cut(s) 138
BpuEI CTTGAG 1 cut(s) 227
BpuMI CCSGG 1 cut(s) 138
BsaWI WCCGGW 1 cut(s) 202
Bse3DI GCAATG 1 cut(s) 56
BseAI TCCGGA 1 cut(s) 202
BseMI GCAATG 1 cut(s) 56
BsgI GTGCAG 1 cut(s) 180
BshFI GGCC 2 cut(s) 88, 174
BsiSI CCGG 2 cut(s) 137, 203
BsnI GGCC 2 cut(s) 88, 174
Bsp13I TCCGGA 1 cut(s) 202
Bsp143I GATC 3 cut(s) 197, 208, 246
BspACI CCGC 2 cut(s) 61, 89
BspANI GGCC 2 cut(s) 88, 174
BspEI TCCGGA 1 cut(s) 202
BspPI GGATC 2 cut(s) 216, 241
BspQI GCTCTTC 1 cut(s) 98
BsrDI GCAATG 1 cut(s) 56
BssMI GATC 3 cut(s) 197, 208, 246
Bst6I CTCTTC 1 cut(s) 98
BstDEI CTNAG 1 cut(s) 313
BstKTI GATC 3 cut(s) 200, 211, 249
BstMBI GATC 3 cut(s) 197, 208, 246
BstMWI GCNNNNNNNGC 1 cut(s) 158
BstSCI CCNGG 1 cut(s) 136
BstX2I RGATCY 2 cut(s) 197, 246
BstYI RGATCY 2 cut(s) 197, 246
BsuRI GGCC 2 cut(s) 88, 174
Csp6I GTAC 1 cut(s) 223
CviAII CATG 1 cut(s) 277
CviJI RGCY 7 cut(s) 14, 22, 54, 88, 152, 174, 271
CviKI_1 RGCY 7 cut(s) 14, 22, 54, 88, 152, 174, 271
CviQI GTAC 1 cut(s) 223
DdeI CTNAG 1 cut(s) 313
DpnI GATC 3 cut(s) 199, 210, 248
DpnII GATC 3 cut(s) 197, 208, 246
DraI TTTAAA 1 cut(s) 259
Eam1104I CTCTTC 1 cut(s) 98
EarI CTCTTC 1 cut(s) 98
FaeI CATG 1 cut(s) 280
FaiI YATR 1 cut(s) 278
FatI CATG 1 cut(s) 276
Fnu4HI GCNGC 1 cut(s) 89
Fsp4HI GCNGC 1 cut(s) 89
GluI GCNGC 1 cut(s) 89
HaeIII GGCC 2 cut(s) 88, 174
HapII CCGG 2 cut(s) 137, 203
Hin1II CATG 1 cut(s) 280
HincII GTYRAC 1 cut(s) 147
HindII GTYRAC 1 cut(s) 147
HpaII CCGG 2 cut(s) 137, 203
HphI GGTGA 1 cut(s) 320
Hpy166II GTNNAC 1 cut(s) 147
Hpy188I TCNGA 1 cut(s) 303
Hpy188III TCNNGA 3 cut(s) 203, 244, 250
Hpy8I GTNNAC 1 cut(s) 147
HpyAV CCTTC 1 cut(s) 210
HpyCH4IV ACGT 1 cut(s) 39
HpyCH4V TGCA 1 cut(s) 161
HpyF10VI GCNNNNNNNGC 1 cut(s) 158
HpyF3I CTNAG 1 cut(s) 313
HpySE526I ACGT 1 cut(s) 39
Hsp92II CATG 1 cut(s) 280
Kpn2I TCCGGA 1 cut(s) 202
Kzo9I GATC 3 cut(s) 197, 208, 246
LguI GCTCTTC 1 cut(s) 98
LpnPI CCDG 3 cut(s) 150, 216, 263
MaeII ACGT 1 cut(s) 39
MaeIII GTNAC 1 cut(s) 308
MalI GATC 3 cut(s) 199, 210, 248
MboI GATC 3 cut(s) 197, 208, 246
MboII GAAGA 3 cut(s) 17, 115, 207
MfeI CAATTG 1 cut(s) 109
MflI RGATCY 2 cut(s) 197, 246
MluCI AATT 4 cut(s) 44, 109, 117, 285
MnlI CCTC 2 cut(s) 78, 199
MroI TCCGGA 1 cut(s) 202
MseI TTAA 3 cut(s) 48, 258, 325
MspA1I CMGCKG 1 cut(s) 91
MspI CCGG 2 cut(s) 137, 203
MspR9I CCNGG 1 cut(s) 138
MunI CAATTG 1 cut(s) 109
MwoI GCNNNNNNNGC 1 cut(s) 158
NciI CCSGG 1 cut(s) 138
NdeII GATC 3 cut(s) 197, 208, 246
NlaIII CATG 1 cut(s) 280
NmuCI GTSAC 1 cut(s) 308
PciSI GCTCTTC 1 cut(s) 98
PkrI GCNGC 1 cut(s) 90
PsuI RGATCY 2 cut(s) 197, 246
RsaI GTAC 1 cut(s) 224
RsaNI GTAC 1 cut(s) 223
SapI GCTCTTC 1 cut(s) 98
SaqAI TTAA 3 cut(s) 48, 258, 325
SatI GCNGC 1 cut(s) 89
Sau3AI GATC 3 cut(s) 197, 208, 246
ScrFI CCNGG 1 cut(s) 138
SetI ASST 6 cut(s) 12, 42, 146, 221, 273, 310
SmlI CTYRAG 1 cut(s) 242
SmoI CTYRAG 1 cut(s) 242
Sse9I AATT 4 cut(s) 44, 109, 117, 285
SsiI CCGC 2 cut(s) 61, 89
StyD4I CCNGG 1 cut(s) 136
TaiI ACGT 1 cut(s) 42
TasI AATT 4 cut(s) 44, 109, 117, 285
TauI GCSGC 1 cut(s) 91
Tru1I TTAA 3 cut(s) 48, 258, 325
Tru9I TTAA 3 cut(s) 48, 258, 325
TseFI GTSAC 1 cut(s) 308
Tsp45I GTSAC 1 cut(s) 308
TspDTI ATGAA 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.