Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003027.1

Orthogroup ID

OG0002012

Physical Location & Seq

Genomic Coordinates Forward (+)

1503 .. 3638

Gene Structure 2136 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003027.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

atgtcacaggtagcttcctcagccctcgatgctcgcttcaaccccacttcacctctcggcggtgatcaagttcgtaacagctcctgccggtggctcatcacagcggcacctcctgctctgcccctacattggttaagaagactgccgtgtggagctcttaaacaaatagcaccttctggtttcatgacactccaggatgcaaaacttagacatcactgtgcagttgaactagtaaagcaaatttgcatagaactttcacgtttgcatatgtcatggcgtttgaactatgttttgaattcagaaatcctgtacatagctactcttaatgggataactgaaatcattagtacactccttgggtgtttccctgatctaatatgggctcagctcagcaacaaccagtatttcttacttccttttgctattgagcttcgacatgaaaatattttccgtcttgtgtgtgaccacactgcaggcagtaaaataatggcatctacattactagaatctggcaccatcttgcatctggcagcaaagttggcacctccggcccaacttacatccagtaagaaaagagatgaaaatactgctaaagaactattaaacttggccgagaaaggggagaagtggctgaatgatacttcgaatgcatgcatggttgttgcaactctaattgctacggtggtttttgctgctgcttttacagttcctggtggtagcgacgaagcagatggaaactcaaatttcttaatgaagaagccattcatattcatggtgtttttggtttcagatgcagtagctctattttcttctctaacttcagtattgatgtttttatccatcctaactgctcggtatgctgaagaagatttcattgactcgttgccaaagaggttgatcataggtttggcttctctcttctttgctatagctgccacaatggtggccttcggtgcaaccatttcgattgtgctcagcaagaggttcagttgggtttctattccgatcaccgtgcttgcctcttttccggtgactctatttgctctgctgcagcttcccttgtttattcaaaaaggagttgaacaaagaaaagatttgcccttctgttatgttgtggtttcattaattatgagtaattttgtgcagcgtttaaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005200 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005856 GO:0005886 GO:0006810 GO:0006887 GO:0006888 GO:0006996 GO:0007010 GO:0007163 GO:0008092 GO:0008093 GO:0008104 GO:0008150 GO:0009987 GO:0014731 GO:0016020 GO:0016043 GO:0016192 GO:0016323 GO:0019899 GO:0030011 GO:0030016 GO:0030017 GO:0030507 GO:0030674 GO:0031430 GO:0031672 GO:0032940 GO:0033036 GO:0034613 GO:0035088 GO:0035090 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043292 GO:0044422 GO:0044424 GO:0044425 GO:0044444 GO:0044449 GO:0044459 GO:0044464 GO:0045197 GO:0045199 GO:0046903 GO:0046907 GO:0048193 GO:0051117 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060090 GO:0061245 GO:0070727 GO:0071840 GO:0071944 GO:0072657 GO:0072659 GO:0098590 GO:0099080 GO:0099081 GO:0099512 GO:1990778

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 PGG

Protein Analysis

385

Amino Acids

42.44

Weight (kDa)

8.59

Isoelectric Point (pI)

47.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002012)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G06040
fragaria_vesca	FvH4_1g08600 FvH4_1g08600 FvH4_1g08610 FvH4_1g08610
malus_domestica	MD02G1090200.v1.1 MD02G1090300.v1.1 MD02G1090400.v1.1 MD15G1216800.v1.1 MD15G1217000.v1.1
prunus_persica	Prupe.7G199500_v2.0.a1 Prupe.7G199600_v2.0.a1 Prupe.7G199800_v2.0.a1 Prupe.7G199800_v2.0.a1
pyrus_communis	pycom02g07210 pycom02g07220 pycom02g07230 pycom15g19230 pycom15g19240
rosa_chinensis	RchiOBHm_Chr2g0093971 RchiOBHm_Chr2g0094821 RchiOBHm_Chr2g0094831 RchiOBHm_Chr5g0043671
rosa_laevigata	RLG00000016524
rosa_multiflora	Rmu_sc0003027.1_g000001 Rmu_sc0006422.1_g000027 Rmu_sc0018486.1_g000002
rosa_roxburghii	Rroxscaffold_1G00075090 Rroxscaffold_2G00146830 Rroxscaffold_2G00146840
rosa_rugosa	Rorug02G0047100 Rorug02G0047100 Rorug02G0054500 Rorug02G0054600 Rorug02G0054700
rosa_samantha	Rh2AG094700 Rh2AG094800 Rh2BG095300 Rh2BG095400 Rh2CG097100 Rh2CG097200 Rh2CG097300 Rh2DG094100 Rh2DG094200 Rh7BG370500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	106, 512, 541
AciI	CCGC	2 cut(s)	60, 104
AcoI	YGGCCR	1 cut(s)	609
AcsI	RAATTY	3 cut(s)	240, 295, 742
AcuI	CTGAAG	2 cut(s)	804, 882
AfaI	GTAC	2 cut(s)	311, 349
AfiI	CCNNNNNNNGG	4 cut(s)	59, 90, 129, 618
AgsI	TTSAA	6 cut(s)	40, 227, 283, 295, 1070, 1082
AhlI	ACTAGT	1 cut(s)	229
AjnI	CCWGG	2 cut(s)	192, 709
AleI	CACNNNNGTG	1 cut(s)	941
AluBI	AGCT	9 cut(s)	14, 81, 155, 317, 388, 430, 800, 932, 1054
AluI	AGCT	9 cut(s)	14, 81, 155, 317, 388, 430, 800, 932, 1054
Alw21I	GWGCWC	2 cut(s)	157, 975
AlwNI	CAGNNNCTG	2 cut(s)	84, 710
AoxI	GGCC	3 cut(s)	549, 609, 945
ApeKI	GCWGC	7 cut(s)	530, 692, 695, 932, 1048, 1051, 1144
ApoI	RAATTY	3 cut(s)	240, 295, 742
AseI	ATTAAT	1 cut(s)	1124
Asp700I	GAANNNNTTC	1 cut(s)	761
AspS9I	GGNCC	1 cut(s)	550
AsuHPI	GGTGA	4 cut(s)	42, 74, 1000, 1042
AsuII	TTCGAA	1 cut(s)	644
BanI	GGYRCC	3 cut(s)	106, 512, 541
BanII	GRGCYC	2 cut(s)	157, 385
BbsI	GAAGAC	1 cut(s)	145
Bbv12I	GWGCWC	2 cut(s)	157, 975
BbvCI	CCTCAGC	1 cut(s)	19
BbvI	GCAGC	6 cut(s)	542, 679, 682, 919, 1035, 1063
BccI	CCATC	3 cut(s)	524, 725, 848
BceAI	ACGGC	1 cut(s)	130
BcgI	CGANNNNNNTGC	4 cut(s)	945, 979, 994, 1028
BciT130I	CCWGG	2 cut(s)	194, 711
BclI	TGATCA	2 cut(s)	64, 897
BcuI	ACTAGT	1 cut(s)	229
BfaI	CTAG	2 cut(s)	230, 503
BfmI	CTRYAG	3 cut(s)	471, 927, 1049
BisI	GCNGC	8 cut(s)	105, 531, 693, 696, 933, 1049, 1052, 1145
BlpI	GCTNAGC	3 cut(s)	384, 389, 974
BlsI	GCNGC	8 cut(s)	106, 532, 694, 697, 934, 1050, 1053, 1146
Bme1390I	CCNGG	2 cut(s)	194, 711
BmgT120I	GGNCC	1 cut(s)	550
BmiI	GGNNCC	3 cut(s)	108, 514, 543
BmrFI	CCNGG	2 cut(s)	194, 711
BmsI	GCATC	5 cut(s)	19, 187, 500, 532, 781
BpiI	GAAGAC	1 cut(s)	145
BpmI	CTGGAG	1 cut(s)	176
Bpu10I	CCTNAGC	1 cut(s)	19
Bpu1102I	GCTNAGC	3 cut(s)	384, 389, 974
Bpu14I	TTCGAA	1 cut(s)	644
BsaJI	CCNNGG	1 cut(s)	355
BsaWI	WCCGGW	1 cut(s)	1027
Bsc4I	CCNNNNNNNGG	4 cut(s)	59, 90, 129, 618
Bse118I	RCCGGY	1 cut(s)	87
Bse1I	ACTGG	2 cut(s)	400, 564
BseBI	CCWGG	2 cut(s)	194, 711
BseDI	CCNNGG	1 cut(s)	355
BseGI	GGATG	3 cut(s)	202, 560, 840
BseLI	CCNNNNNNNGG	4 cut(s)	59, 90, 129, 618
BseMII	CTCAG	4 cut(s)	33, 398, 403, 988
BseNI	ACTGG	2 cut(s)	400, 564
BseXI	GCAGC	6 cut(s)	542, 679, 682, 919, 1035, 1063
BsgI	GTGCAG	1 cut(s)	240
BshFI	GGCC	3 cut(s)	551, 611, 947
BshNI	GGYRCC	3 cut(s)	106, 512, 541
BsiHKAI	GWGCWC	2 cut(s)	157, 975
BsiSI	CCGG	3 cut(s)	88, 548, 1028
BslI	CCNNNNNNNGG	4 cut(s)	59, 90, 129, 618
BsmI	GAATGC	1 cut(s)	652
BsnI	GGCC	3 cut(s)	551, 611, 947
Bsp119I	TTCGAA	1 cut(s)	644
Bsp1286I	GDGCHC	3 cut(s)	157, 385, 975
Bsp1407I	TGTACA	1 cut(s)	309
Bsp143I	GATC	4 cut(s)	64, 370, 897, 1005
Bsp1720I	GCTNAGC	3 cut(s)	384, 389, 974
BspACI	CCGC	2 cut(s)	60, 104
BspANI	GGCC	3 cut(s)	551, 611, 947
BspCNI	CTCAG	4 cut(s)	32, 397, 402, 987
BspHI	TCATGA	1 cut(s)	183
BspLI	GGNNCC	3 cut(s)	108, 514, 543
BspMAI	CTGCAG	2 cut(s)	475, 1053
BspT104I	TTCGAA	1 cut(s)	644
BspT107I	GGYRCC	3 cut(s)	106, 512, 541
BsrFI	RCCGGY	1 cut(s)	87
BsrGI	TGTACA	1 cut(s)	309
BsrI	ACTGG	2 cut(s)	400, 564
BssAI	RCCGGY	1 cut(s)	87
BssECI	CCNNGG	1 cut(s)	355
BssMI	GATC	4 cut(s)	64, 370, 897, 1005
BssT1I	CCWWGG	1 cut(s)	355
Bst2UI	CCWGG	2 cut(s)	194, 711
Bst4CI	ACNGT	4 cut(s)	218, 682, 706, 1012
Bst6I	CTCTTC	1 cut(s)	923
BstAPI	GCANNNNNTGC	1 cut(s)	113
BstAUI	TGTACA	1 cut(s)	309
BstBI	TTCGAA	1 cut(s)	644
BstC8I	GCNNGC	4 cut(s)	34, 475, 652, 1017
BstDEI	CTNAG	5 cut(s)	19, 206, 384, 389, 974
BstF5I	GGATG	3 cut(s)	202, 560, 840
BstKTI	GATC	4 cut(s)	67, 373, 900, 1008
BstMBI	GATC	4 cut(s)	64, 370, 897, 1005
BstMWI	GCNNNNNNNGC	8 cut(s)	20, 29, 113, 539, 548, 857, 932, 953
BstNI	CCWGG	2 cut(s)	194, 711
BstNSI	RCATGY	1 cut(s)	654
BstSCI	CCNGG	2 cut(s)	192, 709
BstSFI	CTRYAG	3 cut(s)	471, 927, 1049
BstV1I	GCAGC	6 cut(s)	542, 679, 682, 919, 1035, 1063
BstV2I	GAAGAC	1 cut(s)	145
BstXI	CCANNNNNNTGG	1 cut(s)	943
BsuRI	GGCC	3 cut(s)	551, 611, 947
BtsCI	GGATG	3 cut(s)	202, 560, 840
BtsI	GCAGTG	1 cut(s)	468
BtsIMutI	CAGTG	2 cut(s)	214, 468
Cac8I	GCNNGC	4 cut(s)	34, 475, 652, 1017
CaiI	CAGNNNCTG	2 cut(s)	84, 710
CciI	TCATGA	1 cut(s)	183
Cfr10I	RCCGGY	1 cut(s)	87
Cfr13I	GGNCC	1 cut(s)	550
Csp6I	GTAC	2 cut(s)	310, 348
CviAII	CATG	6 cut(s)	184, 273, 437, 651, 655, 772
CviQI	GTAC	2 cut(s)	310, 348
DdeI	CTNAG	5 cut(s)	19, 206, 384, 389, 974
DpnI	GATC	4 cut(s)	66, 372, 899, 1007
DpnII	GATC	4 cut(s)	64, 370, 897, 1005
DraI	TTTAAA	1 cut(s)	1152
EaeI	YGGCCR	1 cut(s)	609
Eam1104I	CTCTTC	1 cut(s)	923
EarI	CTCTTC	1 cut(s)	923
Ecl136II	GAGCTC	1 cut(s)	155
Eco130I	CCWWGG	1 cut(s)	355
Eco24I	GRGCYC	2 cut(s)	157, 385
Eco53kI	GAGCTC	1 cut(s)	155
Eco57I	CTGAAG	2 cut(s)	804, 882
EcoICRI	GAGCTC	1 cut(s)	155
EcoRI	GAATTC	1 cut(s)	295
EcoRII	CCWGG	2 cut(s)	192, 709
EcoT14I	CCWWGG	1 cut(s)	355
EcoT22I	ATGCAT	2 cut(s)	652, 656
EcoT38I	GRGCYC	2 cut(s)	157, 385
ErhI	CCWWGG	1 cut(s)	355
FaeI	CATG	6 cut(s)	187, 276, 440, 654, 658, 775
FatI	CATG	6 cut(s)	183, 272, 436, 650, 654, 771
FauNDI	CATATG	1 cut(s)	267
FbaI	TGATCA	2 cut(s)	64, 897
Fnu4HI	GCNGC	8 cut(s)	105, 531, 693, 696, 933, 1049, 1052, 1145
FokI	GGATG	3 cut(s)	209, 547, 827
FriOI	GRGCYC	2 cut(s)	157, 385
Fsp4HI	GCNGC	8 cut(s)	105, 531, 693, 696, 933, 1049, 1052, 1145
FspBI	CTAG	2 cut(s)	230, 503
GluI	GCNGC	8 cut(s)	105, 531, 693, 696, 933, 1049, 1052, 1145
GsuI	CTGGAG	1 cut(s)	176
HaeIII	GGCC	3 cut(s)	551, 611, 947
HapII	CCGG	3 cut(s)	88, 548, 1028
Hin1II	CATG	6 cut(s)	187, 276, 440, 654, 658, 775
HinfI	GANTC	3 cut(s)	506, 878, 1033
HpaII	CCGG	3 cut(s)	88, 548, 1028
HphI	GGTGA	4 cut(s)	42, 74, 1000, 1042
Hpy166II	GTNNAC	1 cut(s)	350
Hpy188I	TCNGA	3 cut(s)	301, 790, 1005
Hpy188III	TCNNGA	1 cut(s)	184
Hpy8I	GTNNAC	1 cut(s)	350
Hpy99I	CGWCG	1 cut(s)	725
HpyAV	CCTTC	3 cut(s)	183, 958, 1111
HpyCH4III	ACNGT	4 cut(s)	218, 682, 706, 1012
HpyCH4IV	ACGT	1 cut(s)	259
HpyF10VI	GCNNNNNNNGC	8 cut(s)	20, 29, 113, 539, 548, 857, 932, 953
HpyF3I	CTNAG	5 cut(s)	19, 206, 384, 389, 974
HpySE526I	ACGT	1 cut(s)	259
Hsp92II	CATG	6 cut(s)	187, 276, 440, 654, 658, 775
Ksp22I	TGATCA	2 cut(s)	64, 897
Kzo9I	GATC	4 cut(s)	64, 370, 897, 1005
LmnI	GCTCC	2 cut(s)	86, 152
Lsp1109I	GCAGC	6 cut(s)	542, 679, 682, 919, 1035, 1063
LweI	GCATC	5 cut(s)	19, 187, 500, 532, 781
MaeI	CTAG	2 cut(s)	230, 503
MaeII	ACGT	1 cut(s)	259
MaeIII	GTNAC	4 cut(s)	3, 74, 461, 1030
MalI	GATC	4 cut(s)	66, 372, 899, 1007
MboI	GATC	4 cut(s)	64, 370, 897, 1005
MboII	GAAGA	6 cut(s)	150, 766, 801, 875, 878, 910
MhlI	GDGCHC	3 cut(s)	157, 385, 975
MluCI	AATT	7 cut(s)	240, 295, 672, 742, 1125, 1135, 1153
MlyI	GAGTC	2 cut(s)	872, 1027
MnlI	CCTC	8 cut(s)	28, 35, 63, 120, 555, 885, 975, 1030
Mph1103I	ATGCAT	2 cut(s)	652, 656
MroXI	GAANNNNTTC	1 cut(s)	761
MseI	TTAA	7 cut(s)	134, 159, 324, 602, 749, 1124, 1151
MslI	CAYNNNNRTG	3 cut(s)	216, 770, 941
MspA1I	CMGCKG	1 cut(s)	104
MspI	CCGG	3 cut(s)	88, 548, 1028
MspR9I	CCNGG	2 cut(s)	194, 711
Mva1269I	GAATGC	1 cut(s)	652
MvaI	CCWGG	2 cut(s)	194, 711
MwoI	GCNNNNNNNGC	8 cut(s)	20, 29, 113, 539, 548, 857, 932, 953
NdeI	CATATG	1 cut(s)	267
NdeII	GATC	4 cut(s)	64, 370, 897, 1005
NlaIII	CATG	6 cut(s)	187, 276, 440, 654, 658, 775
NlaIV	GGNNCC	3 cut(s)	108, 514, 543
NmeAIII	GCCGAG	2 cut(s)	36, 637
NmuCI	GTSAC	3 cut(s)	3, 461, 1030
NsiI	ATGCAT	2 cut(s)	652, 656
NspI	RCATGY	1 cut(s)	654
NspV	TTCGAA	1 cut(s)	644
OliI	CACNNNNGTG	1 cut(s)	941
PaeI	GCATGC	1 cut(s)	654
PagI	TCATGA	1 cut(s)	183
PctI	GAATGC	1 cut(s)	652
PdmI	GAANNNNTTC	1 cut(s)	761
PfeI	GAWTC	1 cut(s)	506
PfoI	TCCNGGA	1 cut(s)	192
PkrI	GCNGC	8 cut(s)	106, 532, 694, 697, 934, 1050, 1053, 1146
PleI	GAGTC	2 cut(s)	872, 1027
PpsI	GAGTC	2 cut(s)	872, 1027
PshBI	ATTAAT	1 cut(s)	1124
Psp124BI	GAGCTC	1 cut(s)	157
Psp6I	CCWGG	2 cut(s)	192, 709
PspGI	CCWGG	2 cut(s)	192, 709
PspN4I	GGNNCC	3 cut(s)	108, 514, 543
PspPI	GGNCC	1 cut(s)	550
PstI	CTGCAG	2 cut(s)	475, 1053
PstNI	CAGNNNCTG	2 cut(s)	84, 710
RsaI	GTAC	2 cut(s)	311, 349
RsaNI	GTAC	2 cut(s)	310, 348
RseI	CAYNNNNRTG	3 cut(s)	216, 770, 941
SacI	GAGCTC	1 cut(s)	157
SaqAI	TTAA	7 cut(s)	134, 159, 324, 602, 749, 1124, 1151
SatI	GCNGC	8 cut(s)	105, 531, 693, 696, 933, 1049, 1052, 1145
Sau3AI	GATC	4 cut(s)	64, 370, 897, 1005
Sau96I	GGNCC	1 cut(s)	550
SchI	GAGTC	2 cut(s)	872, 1027
ScrFI	CCNGG	2 cut(s)	194, 711
SduI	GDGCHC	3 cut(s)	157, 385, 975
SfaNI	GCATC	5 cut(s)	19, 187, 500, 532, 781
SfcI	CTRYAG	3 cut(s)	471, 927, 1049
SfuI	TTCGAA	1 cut(s)	644
SmiMI	CAYNNNNRTG	3 cut(s)	216, 770, 941
SpeI	ACTAGT	1 cut(s)	229
SphI	GCATGC	1 cut(s)	654
Sse9I	AATT	7 cut(s)	240, 295, 672, 742, 1125, 1135, 1153
SsiI	CCGC	2 cut(s)	60, 104
SspI	AATATT	1 cut(s)	445
SspMI	CTAG	2 cut(s)	230, 503
SstI	GAGCTC	1 cut(s)	157
StyD4I	CCNGG	2 cut(s)	192, 709
StyI	CCWWGG	1 cut(s)	355
TaaI	ACNGT	4 cut(s)	218, 682, 706, 1012
TaiI	ACGT	1 cut(s)	262
TaqI	TCGA	4 cut(s)	27, 433, 644, 965
TasI	AATT	7 cut(s)	240, 295, 672, 742, 1125, 1135, 1153
TatI	WGTACW	2 cut(s)	309, 347
TauI	GCSGC	1 cut(s)	107
TfiI	GAWTC	1 cut(s)	506
Tru1I	TTAA	7 cut(s)	134, 159, 324, 602, 749, 1124, 1151
Tru9I	TTAA	7 cut(s)	134, 159, 324, 602, 749, 1124, 1151
TscAI	CASTG	2 cut(s)	221, 475
TseFI	GTSAC	3 cut(s)	3, 461, 1030
TseI	GCWGC	7 cut(s)	530, 692, 695, 932, 1048, 1051, 1144
Tsp45I	GTSAC	3 cut(s)	3, 461, 1030
TspDTI	ATGAA	8 cut(s)	172, 453, 594, 754, 760, 767, 862, 1110
TspGWI	ACGGA	1 cut(s)	440
TspRI	CASTG	2 cut(s)	221, 475
VspI	ATTAAT	1 cut(s)	1124
XapI	RAATTY	3 cut(s)	240, 295, 742
XceI	RCATGY	1 cut(s)	654
XcmI	CCANNNNNNNNNTGG	1 cut(s)	523
XmnI	GAANNNNTTC	1 cut(s)	761
XspI	CTAG	2 cut(s)	230, 503
Zsp2I	ATGCAT	2 cut(s)	652, 656

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.